Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00034 * 2 1 4 4 H 1.48503 * 109.46726 * 239.99728 * 3 2 1 5 5 H 1.48497 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47365 * 119.99882 * 3 2 1 7 7 C 1.37884 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99777 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99726 * 270.00053 * 10 9 7 12 12 O 1.21298 * 119.99518 * 184.74180 * 11 10 9 13 13 C 1.50699 * 120.00372 * 4.73912 * 11 10 9 14 14 O 1.42894 * 109.47014 * 180.02562 * 13 11 10 15 15 C 1.42902 * 113.99964 * 180.02562 * 14 13 11 16 16 C 1.54273 * 110.03009 * 267.90438 * 15 14 13 17 17 C 1.54961 * 104.15855 * 217.13500 * 16 15 14 18 18 C 1.54886 * 102.78102 * 37.88908 * 17 16 15 19 19 C 1.53874 * 110.03610 * 150.69257 * 15 14 13 20 20 C 1.40098 * 120.00185 * 89.99661 * 10 9 7 21 21 C 1.38847 * 120.02316 * 247.64126 * 20 10 9 22 22 C 1.38120 * 120.03961 * 180.32617 * 21 20 10 23 23 C 1.38716 * 120.16438 * 0.02562 * 22 21 20 24 24 C 1.38995 * 119.92886 * 359.90146 * 23 22 21 25 25 C 1.38645 * 119.88619 * 0.12465 * 24 23 22 26 26 O 1.36122 * 120.77998 * 180.26321 * 24 23 22 27 27 C 1.43170 * 116.73009 * 342.80311 * 26 24 23 28 28 C 1.53462 * 108.24664 * 46.18954 * 27 26 24 29 29 O 1.36200 * 119.32010 * 179.81428 * 23 22 21 30 30 H 0.97001 * 120.00450 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47132 * 59.99549 * 9 7 2 32 32 H 1.08998 * 109.47163 * 299.99525 * 9 7 2 33 33 H 1.08996 * 109.46761 * 300.00121 * 13 11 10 34 34 H 1.09003 * 109.47109 * 60.00186 * 13 11 10 35 35 H 1.08998 * 110.01973 * 29.29457 * 15 14 13 36 36 H 1.09003 * 110.48638 * 335.78537 * 16 15 14 37 37 H 1.09002 * 110.48109 * 98.42826 * 16 15 14 38 38 H 1.09008 * 110.72022 * 279.57368 * 17 16 15 39 39 H 1.09001 * 110.92234 * 156.30369 * 17 16 15 40 40 H 1.08996 * 110.49000 * 203.40086 * 18 17 16 41 41 H 1.09001 * 110.59532 * 80.81423 * 18 17 16 42 42 H 1.09000 * 110.03135 * 238.57394 * 19 15 14 43 43 H 1.09003 * 110.03280 * 359.94671 * 19 15 14 44 44 H 1.08001 * 119.97353 * 0.32136 * 21 20 10 45 45 H 1.08005 * 119.91892 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.99055 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.70662 * 165.87916 * 27 26 24 48 48 H 1.09003 * 109.70881 * 286.49962 * 27 26 24 49 49 H 1.09005 * 109.71269 * 59.91726 * 28 27 26 50 50 H 1.08997 * 109.71150 * 180.54713 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1249 -1.1667 12 8 3.3611 -5.1009 -1.1684 13 6 2.2357 -3.4850 -2.4696 14 8 2.8218 -4.2046 -3.5561 15 6 2.4991 -3.6767 -4.8442 16 6 1.2437 -4.3778 -5.4033 17 6 1.5275 -4.5097 -6.9210 18 6 3.0420 -4.8316 -6.9597 19 6 3.6419 -3.9648 -5.8335 20 6 2.6583 -4.1451 1.2138 21 6 3.9864 -3.9877 1.5867 22 6 4.4372 -4.5183 2.7796 23 6 3.5660 -5.2100 3.6082 24 6 2.2355 -5.3679 3.2384 25 6 1.7835 -4.8356 2.0406 26 8 1.3643 -6.0389 4.0408 27 6 1.9348 -6.8766 5.0520 28 6 3.0478 -6.0894 5.7566 29 8 4.0297 -5.7293 4.7788 30 1 -0.4851 0.8400 0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5568 0.8903 33 1 1.1500 -3.5073 -2.5630 34 1 2.5810 -2.4514 -2.4896 35 1 2.3271 -2.6026 -4.7749 36 1 1.1232 -5.3621 -4.9509 37 1 0.3574 -3.7669 -5.2318 38 1 1.3187 -3.5715 -7.4353 39 1 0.9481 -5.3241 -7.3560 40 1 3.4670 -4.5522 -7.9237 41 1 3.2144 -5.8892 -6.7600 42 1 4.0241 -3.0305 -6.2447 43 1 4.4432 -4.5065 -5.3308 44 1 4.6674 -3.4501 0.9435 45 1 5.4709 -4.3950 3.0675 46 1 0.7502 -4.9577 1.7514 47 1 1.1676 -7.1551 5.7745 48 1 2.3521 -7.7734 4.5941 49 1 2.6318 -5.1890 6.2086 50 1 3.5061 -6.7099 6.5267 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -128.345953 kcal Electronic energy + Delta-G solvation = -32831.340594 eV Core-core repulsion = 28403.264851 eV Total energy + Delta-G solvation = -4428.075743 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.06634 -39.68565 -38.63464 -37.14945 -37.07977 -35.48375 -34.84963 -32.66297 -30.90283 -30.23531 -28.86387 -28.60201 -27.96602 -27.07446 -26.25284 -24.45718 -23.25842 -22.28482 -21.15136 -20.71433 -20.19976 -19.22322 -18.29683 -17.19395 -17.17478 -16.80005 -16.55202 -16.24381 -15.66210 -15.41573 -15.25602 -15.04796 -14.86256 -14.55573 -14.33927 -14.27444 -13.99445 -13.59560 -13.50256 -13.31432 -13.14696 -12.95307 -12.45507 -12.25169 -12.13853 -11.78107 -11.72557 -11.56907 -11.26418 -11.11817 -11.10768 -11.06022 -11.04100 -10.90395 -10.78661 -10.62259 -10.42685 -10.38562 -10.21154 -9.91751 -9.25258 -9.14315 -8.62931 -8.45828 -8.14439 -7.48458 -6.25615 -4.33731 1.57004 1.64457 3.05896 3.19699 3.20707 3.22653 3.25946 3.30606 3.51307 4.02058 4.24879 4.26001 4.36260 4.62375 4.63773 4.77250 4.82943 4.85050 4.96446 5.07855 5.18638 5.28346 5.37863 5.39886 5.49051 5.52258 5.55207 5.58396 5.63204 5.69882 5.73817 5.76130 5.86882 5.91506 5.94023 6.04255 6.06260 6.16406 6.19766 6.26674 6.32946 6.39421 6.58712 6.79713 6.90969 7.03311 7.08024 7.37991 7.54477 7.65821 7.71093 7.93640 8.10003 8.69281 8.88973 9.34212 10.81168 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.007689 B = 0.003171 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3640.632778 B = 8826.930811 C =11319.740958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.237 3.763 10 N -0.559 5.559 11 C 0.525 3.475 12 O -0.538 6.538 13 C 0.052 3.948 14 O -0.362 6.362 15 C 0.082 3.918 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.123 4.123 20 C 0.185 3.815 21 C -0.099 4.099 22 C -0.103 4.103 23 C 0.035 3.965 24 C 0.058 3.942 25 C -0.116 4.116 26 O -0.308 6.308 27 C 0.022 3.978 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.267 0.733 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -9.411 -0.395 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.289 5.289 11 C 0.313 3.687 12 O -0.415 6.415 13 C -0.028 4.028 14 O -0.280 6.280 15 C 0.024 3.976 16 C -0.187 4.187 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.161 4.161 20 C 0.094 3.906 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.010 4.010 24 C 0.013 3.987 25 C -0.136 4.136 26 O -0.222 6.222 27 C -0.054 4.054 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.136 0.864 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.974 -9.971 -0.365 10.412 hybrid contribution -0.013 1.329 0.339 1.371 sum 2.961 -8.643 -0.026 9.136 Atomic orbital electron populations 1.69902 1.06015 1.27608 1.49195 1.24919 0.94849 0.99275 0.94514 0.86562 0.79595 0.82449 0.78970 1.19989 1.21081 1.19980 1.21405 0.93691 0.90184 1.52742 0.91850 1.19629 0.87188 0.82106 0.99226 1.45845 1.46082 1.34989 1.01980 1.20193 0.80172 0.83384 0.84904 1.90665 1.37254 1.26084 1.87452 1.22260 0.98651 0.96546 0.85307 1.87999 1.72638 1.54534 1.12841 1.22815 0.94136 0.97263 0.83364 1.22941 0.98007 1.01998 0.95762 1.22432 0.96200 1.01382 0.96007 1.22323 0.95473 1.00120 0.98055 1.22212 0.98155 1.00395 0.95319 1.17087 0.91869 0.94543 0.87143 1.21026 0.95553 0.99604 0.95731 1.20191 0.99493 0.98382 0.94150 1.18769 0.92473 1.01434 0.88319 1.18511 0.88542 0.99168 0.92525 1.20392 1.01292 1.00001 0.91945 1.86302 1.32673 1.58566 1.44688 1.23570 0.97976 0.92931 0.90947 1.23559 0.90678 1.00491 0.90747 1.86291 1.33792 1.78566 1.23861 0.92320 0.93993 0.93963 0.90407 0.88699 0.91518 0.90409 0.91337 0.91507 0.91563 0.91752 0.91447 0.91134 0.90215 0.85054 0.84821 0.84689 0.86435 0.90737 0.90651 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 13.29 55.43 0.74 -23.04 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.62 9.16 -34.44 -0.32 -13.94 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.24 5.50 4.88 -5.19 -0.03 5.47 16 10 N -0.56 -12.04 2.51 -114.72 -0.29 -12.33 16 11 C 0.52 11.31 7.60 -10.99 -0.08 11.22 16 12 O -0.54 -12.85 16.25 -14.37 -0.23 -13.08 16 13 C 0.05 0.97 4.92 36.01 0.18 1.15 16 14 O -0.36 -6.58 9.43 -55.14 -0.52 -7.10 16 15 C 0.08 1.18 3.38 -25.61 -0.09 1.09 16 16 C -0.15 -1.88 6.56 -25.03 -0.16 -2.04 16 17 C -0.12 -1.25 6.91 -24.70 -0.17 -1.42 16 18 C -0.12 -1.27 6.83 -25.08 -0.17 -1.44 16 19 C -0.12 -1.51 6.61 -25.62 -0.17 -1.68 16 20 C 0.19 3.83 4.76 -83.66 -0.40 3.43 16 21 C -0.10 -1.91 9.53 -39.40 -0.38 -2.28 16 22 C -0.10 -1.75 9.95 -39.45 -0.39 -2.15 16 23 C 0.03 0.59 6.49 -39.12 -0.25 0.33 16 24 C 0.06 1.02 6.49 -39.15 -0.25 0.77 16 25 C -0.12 -2.24 9.60 -39.24 -0.38 -2.62 16 26 O -0.31 -4.79 10.42 -32.91 -0.34 -5.13 16 27 C 0.02 0.23 7.26 37.40 0.27 0.50 16 28 C 0.02 0.22 7.26 37.40 0.27 0.49 16 29 O -0.31 -4.55 10.42 -33.16 -0.35 -4.89 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.04 0.97 6.47 -51.93 -0.34 0.64 16 32 H 0.04 1.05 7.86 -51.93 -0.41 0.64 16 33 H 0.08 1.37 7.26 -51.93 -0.38 1.00 16 34 H 0.10 1.80 7.87 -51.93 -0.41 1.40 16 35 H 0.07 0.92 7.81 -51.93 -0.41 0.51 16 36 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 44 H 0.13 2.49 8.06 -52.49 -0.42 2.06 16 45 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 46 H 0.14 2.52 8.06 -52.49 -0.42 2.09 16 47 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -31.07 411.86 -10.23 -41.30 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.81 Total: 4.51 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.61 Total: -1.47 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.45 Total: -35.37 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.44 Total: -30.21 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.07 -10.23 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.045 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds