Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00034 * 2 1 4 4 H 1.48503 * 109.46726 * 239.99728 * 3 2 1 5 5 H 1.48497 * 109.46840 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47365 * 119.99882 * 3 2 1 7 7 C 1.37884 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99777 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99726 * 270.00053 * 10 9 7 12 12 O 1.21298 * 119.99518 * 184.74180 * 11 10 9 13 13 C 1.50699 * 120.00372 * 4.73912 * 11 10 9 14 14 O 1.42894 * 109.47014 * 180.02562 * 13 11 10 15 15 C 1.42902 * 113.99964 * 180.02562 * 14 13 11 16 16 C 1.54273 * 110.03009 * 267.90438 * 15 14 13 17 17 C 1.54961 * 104.15855 * 217.13500 * 16 15 14 18 18 C 1.54886 * 102.78102 * 37.88908 * 17 16 15 19 19 C 1.53874 * 110.03610 * 150.69257 * 15 14 13 20 20 C 1.40098 * 120.00185 * 89.99661 * 10 9 7 21 21 C 1.38847 * 120.02316 * 247.64126 * 20 10 9 22 22 C 1.38120 * 120.03961 * 180.32617 * 21 20 10 23 23 C 1.38716 * 120.16438 * 0.02562 * 22 21 20 24 24 C 1.38995 * 119.92886 * 359.90146 * 23 22 21 25 25 C 1.38645 * 119.88619 * 0.12465 * 24 23 22 26 26 O 1.36122 * 120.77998 * 180.26321 * 24 23 22 27 27 C 1.43170 * 116.73009 * 342.80311 * 26 24 23 28 28 C 1.53462 * 108.24664 * 46.18954 * 27 26 24 29 29 O 1.36200 * 119.32010 * 179.81428 * 23 22 21 30 30 H 0.97001 * 120.00450 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47132 * 59.99549 * 9 7 2 32 32 H 1.08998 * 109.47163 * 299.99525 * 9 7 2 33 33 H 1.08996 * 109.46761 * 300.00121 * 13 11 10 34 34 H 1.09003 * 109.47109 * 60.00186 * 13 11 10 35 35 H 1.08998 * 110.01973 * 29.29457 * 15 14 13 36 36 H 1.09003 * 110.48638 * 335.78537 * 16 15 14 37 37 H 1.09002 * 110.48109 * 98.42826 * 16 15 14 38 38 H 1.09008 * 110.72022 * 279.57368 * 17 16 15 39 39 H 1.09001 * 110.92234 * 156.30369 * 17 16 15 40 40 H 1.08996 * 110.49000 * 203.40086 * 18 17 16 41 41 H 1.09001 * 110.59532 * 80.81423 * 18 17 16 42 42 H 1.09000 * 110.03135 * 238.57394 * 19 15 14 43 43 H 1.09003 * 110.03280 * 359.94671 * 19 15 14 44 44 H 1.08001 * 119.97353 * 0.32136 * 21 20 10 45 45 H 1.08005 * 119.91892 * 179.97438 * 22 21 20 46 46 H 1.07997 * 119.99055 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.70662 * 165.87916 * 27 26 24 48 48 H 1.09003 * 109.70881 * 286.49962 * 27 26 24 49 49 H 1.09005 * 109.71269 * 59.91726 * 28 27 26 50 50 H 1.08997 * 109.71150 * 180.54713 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1249 -1.1667 12 8 3.3611 -5.1009 -1.1684 13 6 2.2357 -3.4850 -2.4696 14 8 2.8218 -4.2046 -3.5561 15 6 2.4991 -3.6767 -4.8442 16 6 1.2437 -4.3778 -5.4033 17 6 1.5275 -4.5097 -6.9210 18 6 3.0420 -4.8316 -6.9597 19 6 3.6419 -3.9648 -5.8335 20 6 2.6583 -4.1451 1.2138 21 6 3.9864 -3.9877 1.5867 22 6 4.4372 -4.5183 2.7796 23 6 3.5660 -5.2100 3.6082 24 6 2.2355 -5.3679 3.2384 25 6 1.7835 -4.8356 2.0406 26 8 1.3643 -6.0389 4.0408 27 6 1.9348 -6.8766 5.0520 28 6 3.0478 -6.0894 5.7566 29 8 4.0297 -5.7293 4.7788 30 1 -0.4851 0.8400 0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5568 0.8903 33 1 1.1500 -3.5073 -2.5630 34 1 2.5810 -2.4514 -2.4896 35 1 2.3271 -2.6026 -4.7749 36 1 1.1232 -5.3621 -4.9509 37 1 0.3574 -3.7669 -5.2318 38 1 1.3187 -3.5715 -7.4353 39 1 0.9481 -5.3241 -7.3560 40 1 3.4670 -4.5522 -7.9237 41 1 3.2144 -5.8892 -6.7600 42 1 4.0241 -3.0305 -6.2447 43 1 4.4432 -4.5065 -5.3308 44 1 4.6674 -3.4501 0.9435 45 1 5.4709 -4.3950 3.0675 46 1 0.7502 -4.9577 1.7514 47 1 1.1676 -7.1551 5.7745 48 1 2.3521 -7.7734 4.5941 49 1 2.6318 -5.1890 6.2086 50 1 3.5061 -6.7099 6.5267 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071900174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -144.382768 kcal Electronic energy + Delta-G solvation = -32832.036002 eV Core-core repulsion = 28403.264851 eV Total energy + Delta-G solvation = -4428.771151 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.30870 -41.25606 -39.83059 -38.56259 -38.24729 -36.70002 -36.57131 -34.56685 -32.06024 -31.65892 -30.06218 -29.64636 -29.46557 -28.58771 -27.58242 -25.59691 -25.09846 -23.76958 -22.43581 -21.61675 -21.29013 -20.61412 -19.56502 -18.79639 -18.62220 -18.17774 -17.95738 -17.80027 -17.09224 -16.79224 -16.53824 -16.40483 -16.08691 -15.95008 -15.63246 -15.40025 -15.26479 -14.95321 -14.90657 -14.53457 -14.33717 -14.24290 -14.18487 -13.71403 -13.53771 -13.38487 -13.06445 -12.94306 -12.80597 -12.63895 -12.44147 -12.21599 -12.08220 -12.00788 -11.99201 -11.93527 -11.82274 -11.51385 -11.48810 -11.46397 -10.88834 -10.63169 -10.51526 -10.05684 -9.61969 -8.94823 -8.22563 -6.37528 0.13246 0.22865 1.42837 1.43910 1.49580 1.54528 1.70278 2.04922 2.30743 2.39092 2.59320 2.93513 3.08345 3.27711 3.61806 3.64874 3.68559 3.76975 3.97158 4.03065 4.05168 4.12950 4.17061 4.17999 4.33136 4.36076 4.37789 4.46390 4.54222 4.57976 4.58840 4.64841 4.74572 4.76342 4.81250 4.95389 4.95845 5.02063 5.03947 5.07020 5.14797 5.21871 5.29638 5.30349 5.43917 5.46811 5.65525 5.82679 5.86619 5.98570 6.20859 6.36521 6.37844 6.72170 7.15932 7.34520 8.83246 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.007689 B = 0.003171 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3640.632778 B = 8826.930811 C =11319.740958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.252 3.748 10 N -0.556 5.556 11 C 0.520 3.480 12 O -0.566 6.566 13 C 0.063 3.937 14 O -0.382 6.382 15 C 0.068 3.932 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.151 3.849 21 C -0.115 4.115 22 C -0.100 4.100 23 C 0.041 3.959 24 C 0.059 3.941 25 C -0.133 4.133 26 O -0.323 6.323 27 C 0.012 3.988 28 C 0.014 3.986 29 O -0.315 6.315 30 H 0.269 0.731 31 H 0.040 0.960 32 H 0.022 0.978 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.161 0.839 46 H 0.130 0.870 47 H 0.158 0.842 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -9.587 0.116 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.133 3.867 10 N -0.285 5.285 11 C 0.310 3.690 12 O -0.445 6.445 13 C -0.016 4.016 14 O -0.301 6.301 15 C 0.011 3.989 16 C -0.188 4.188 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.161 4.161 20 C 0.060 3.940 21 C -0.134 4.134 22 C -0.119 4.119 23 C -0.005 4.005 24 C 0.013 3.987 25 C -0.153 4.153 26 O -0.238 6.238 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.230 6.230 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.179 0.821 46 H 0.148 0.852 47 H 0.175 0.825 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.581 -10.161 0.162 10.775 hybrid contribution -0.216 1.249 0.359 1.318 sum 3.364 -8.912 0.521 9.540 Atomic orbital electron populations 1.69992 1.07197 1.28429 1.49959 1.25599 0.95535 1.02141 0.94106 0.85650 0.78488 0.78841 0.79027 1.19120 1.20574 1.20072 1.21557 0.93444 0.91108 1.52571 0.92523 1.19308 0.87094 0.82290 0.98009 1.45763 1.45587 1.34440 1.02719 1.20667 0.79652 0.83039 0.85664 1.90626 1.38657 1.27370 1.87864 1.22093 0.99006 0.95901 0.84617 1.87987 1.73022 1.55067 1.14016 1.23197 0.95959 0.97652 0.82073 1.22933 0.97319 1.00936 0.97619 1.22436 0.96150 1.02687 0.94017 1.22329 0.95552 0.99430 0.98262 1.22260 0.97003 1.01468 0.95355 1.17384 0.92964 0.96294 0.87349 1.21065 0.94957 1.00587 0.96841 1.20440 1.00812 0.97454 0.93151 1.18828 0.91912 1.00540 0.89183 1.18516 0.89167 0.98796 0.92193 1.20415 1.00980 1.00922 0.93029 1.86281 1.33185 1.58902 1.45409 1.24043 0.99501 0.92213 0.90478 1.24001 0.90330 1.01388 0.90347 1.86288 1.35338 1.78012 1.23398 0.92150 0.94183 0.95976 0.89551 0.89060 0.91181 0.91929 0.90978 0.90081 0.90195 0.89426 0.91954 0.89461 0.91962 0.85617 0.82134 0.85235 0.82488 0.90102 0.90305 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.29 21.45 0.28 -49.30 16 2 C 0.03 1.40 5.46 84.66 0.46 1.87 16 3 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -28.25 9.16 25.60 0.23 -28.02 16 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.25 12.24 4.88 85.63 0.42 12.65 16 10 N -0.56 -25.20 2.51 -635.25 -1.59 -26.80 16 11 C 0.52 23.50 7.60 87.66 0.67 24.17 16 12 O -0.57 -28.30 16.25 15.95 0.26 -28.05 16 13 C 0.06 2.47 4.92 71.24 0.35 2.83 16 14 O -0.38 -14.39 9.43 -129.94 -1.23 -15.61 16 15 C 0.07 1.97 3.38 31.32 0.11 2.07 16 16 C -0.15 -3.73 6.56 31.70 0.21 -3.52 16 17 C -0.12 -2.14 6.91 31.91 0.22 -1.92 16 18 C -0.12 -2.25 6.83 31.67 0.22 -2.04 16 19 C -0.12 -2.96 6.61 31.32 0.21 -2.75 16 20 C 0.15 6.54 4.76 38.09 0.18 6.72 16 21 C -0.11 -4.56 9.53 22.39 0.21 -4.34 16 22 C -0.10 -3.37 9.95 22.36 0.22 -3.14 16 23 C 0.04 1.34 6.49 22.57 0.15 1.49 16 24 C 0.06 2.09 6.49 22.55 0.15 2.24 16 25 C -0.13 -5.37 9.60 22.49 0.22 -5.16 16 26 O -0.32 -9.74 10.42 -82.71 -0.86 -10.60 16 27 C 0.01 0.22 7.26 72.14 0.52 0.75 16 28 C 0.01 0.24 7.26 72.14 0.52 0.77 16 29 O -0.32 -8.50 10.42 -83.61 -0.87 -9.37 16 30 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.04 1.94 6.47 -2.39 -0.02 1.93 16 32 H 0.02 1.16 7.86 -2.39 -0.02 1.14 16 33 H 0.09 3.19 7.26 -2.39 -0.02 3.17 16 34 H 0.09 3.61 7.87 -2.39 -0.02 3.60 16 35 H 0.07 1.93 7.81 -2.39 -0.02 1.91 16 36 H 0.06 1.73 8.08 -2.39 -0.02 1.72 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.71 7.96 -2.39 -0.02 1.69 16 44 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 45 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 46 H 0.13 5.17 8.06 -2.91 -0.02 5.14 16 47 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.86 411.86 4.22 -64.65 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.94 Total: 27.34 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.26 Total: 4.66 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.31 Total: -76.10 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -2.70 Total: -63.63 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -68.86 4.22 -64.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.737 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds