Wall clock time and date at job start Tue Mar 31 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47738 * 2 1 4 4 C 1.50702 * 109.47056 * 240.00120 * 2 1 3 5 5 H 1.08002 * 120.00225 * 275.20153 * 4 2 1 6 6 C 1.37881 * 120.00045 * 95.20220 * 4 2 1 7 7 N 1.31506 * 120.00256 * 174.57163 * 6 4 2 8 8 Si 1.86800 * 119.99604 * 354.57265 * 6 4 2 9 9 H 1.48504 * 109.47104 * 84.91621 * 8 6 4 10 10 H 1.48499 * 109.47035 * 204.90982 * 8 6 4 11 11 H 1.48498 * 109.47567 * 324.91073 * 8 6 4 12 12 N 1.46901 * 109.47229 * 120.00287 * 2 1 3 13 13 C 1.46848 * 111.00101 * 170.78606 * 12 2 1 14 14 C 1.53041 * 109.52053 * 185.84280 * 13 12 2 15 15 C 1.53121 * 109.27622 * 300.81794 * 14 13 12 16 16 C 1.50701 * 109.52297 * 177.55996 * 15 14 13 17 17 N 1.30581 * 125.50886 * 145.00891 * 16 15 14 18 18 C 1.33821 * 109.53929 * 179.89408 * 17 16 15 19 19 C 1.36053 * 107.89173 * 0.37234 * 18 17 16 20 20 C 1.47916 * 126.75373 * 179.75185 * 19 18 17 21 21 C 1.39552 * 120.10460 * 0.03620 * 20 19 18 22 22 C 1.37956 * 119.92454 * 179.97438 * 21 20 19 23 23 C 1.38515 * 120.14215 * 359.97438 * 22 21 20 24 24 F 1.35104 * 119.89202 * 179.97438 * 23 22 21 25 25 C 1.38754 * 120.21804 * 359.97438 * 23 22 21 26 26 F 1.35101 * 119.96598 * 180.02562 * 25 23 22 27 27 C 1.38152 * 120.06598 * 359.72894 * 25 23 22 28 28 N 1.35105 * 125.51019 * 325.32625 * 16 15 14 29 29 H 0.97002 * 126.45254 * 359.97438 * 28 16 15 30 30 C 1.53120 * 109.15798 * 57.66259 * 15 14 13 31 31 C 1.46844 * 111.00143 * 294.99969 * 12 2 1 32 32 H 1.08998 * 109.47637 * 186.03358 * 1 2 3 33 33 H 1.09002 * 109.47218 * 306.03754 * 1 2 3 34 34 H 1.09005 * 109.47139 * 66.03306 * 1 2 3 35 35 H 0.97000 * 120.00690 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46209 * 305.85530 * 13 12 2 37 37 H 1.08997 * 109.46056 * 65.82759 * 13 12 2 38 38 H 1.09003 * 109.49907 * 180.88268 * 14 13 12 39 39 H 1.08995 * 109.53805 * 60.78532 * 14 13 12 40 40 H 1.08998 * 109.58043 * 297.72260 * 15 14 13 41 41 H 1.08001 * 126.04812 * 180.15324 * 18 17 16 42 42 H 1.07994 * 120.03556 * 359.97162 * 21 20 19 43 43 H 1.08000 * 119.92276 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.06857 * 180.27390 * 27 25 23 45 45 H 1.08998 * 109.50362 * 182.40194 * 30 15 14 46 46 H 1.08997 * 109.50646 * 62.28174 * 30 15 14 47 47 H 1.09002 * 109.46252 * 294.17459 * 31 12 2 48 48 H 1.09008 * 109.45908 * 54.15167 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1323 -1.7858 -1.2302 6 6 2.3641 0.0125 -2.3567 7 7 2.9024 -0.5936 -3.3922 8 14 2.0492 1.8530 -2.4115 9 1 3.1903 2.5693 -1.7869 10 1 1.9047 2.2886 -3.8238 11 1 0.8023 2.1642 -1.6675 12 7 2.0196 -0.6926 1.1994 13 6 3.4709 -0.9052 1.1287 14 6 3.9221 -1.7535 2.3198 15 6 3.5557 -1.0338 3.6207 16 6 3.9436 -1.8917 4.7974 17 7 4.3884 -1.4511 5.9434 18 6 4.6308 -2.4855 6.7570 19 6 4.3298 -3.6278 6.0819 20 6 4.4490 -5.0125 6.5880 21 6 4.9109 -5.2469 7.8838 22 6 5.0202 -6.5399 8.3522 23 6 4.6720 -7.6059 7.5392 24 9 4.7815 -8.8702 8.0029 25 6 4.2110 -7.3797 6.2502 26 9 3.8723 -8.4232 5.4618 27 6 4.0923 -6.0882 5.7743 28 7 3.8930 -3.2413 4.8352 29 1 3.6036 -3.8274 4.1186 30 6 2.0457 -0.7814 3.6472 31 6 1.6489 0.0387 2.4176 32 1 -0.3634 -1.0219 0.1080 33 1 -0.3634 0.6046 0.8310 34 1 -0.3634 0.4175 -0.9391 35 1 3.1355 -0.0851 -4.1847 36 1 3.7175 -1.4215 0.2010 37 1 3.9807 0.0578 1.1548 38 1 5.0016 -1.8980 2.2755 39 1 3.4237 -2.7223 2.2870 40 1 4.0850 -0.0824 3.6734 41 1 5.0033 -2.4245 7.7689 42 1 5.1825 -4.4169 8.5192 43 1 5.3781 -6.7212 9.3549 44 1 3.7294 -5.9118 4.7724 45 1 1.7844 -0.2314 4.5513 46 1 1.5171 -1.7346 3.6350 47 1 2.1672 0.9974 2.4377 48 1 0.5720 0.2079 2.4261 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072232578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:20 Heat of formation + Delta-G solvation = -13.876162 kcal Electronic energy + Delta-G solvation = -31445.105748 eV Core-core repulsion = 26943.199023 eV Total energy + Delta-G solvation = -4501.906725 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.166 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.86194 -48.93386 -42.41573 -39.27359 -38.55176 -34.86416 -33.13755 -32.47494 -31.67934 -31.32281 -30.56407 -29.73842 -27.72871 -25.42787 -24.53016 -23.72977 -23.18552 -22.44051 -21.43575 -20.59713 -19.95924 -19.20184 -18.78929 -17.89709 -17.34451 -17.07927 -16.93334 -16.71435 -15.63725 -15.38120 -15.32312 -14.95405 -14.89040 -14.55013 -14.47926 -14.34701 -14.16119 -14.03885 -13.50137 -13.36124 -13.12136 -12.95812 -12.79355 -12.66104 -12.54661 -12.38407 -11.84612 -11.82896 -11.30802 -11.09575 -10.92250 -10.83484 -10.59807 -10.48182 -10.31530 -10.26464 -10.16342 -9.92841 -9.82406 -9.76651 -9.47794 -9.12369 -8.60632 -8.07795 -7.39947 -6.16601 -4.15014 0.12963 0.47134 1.83229 2.72137 2.77906 3.14637 3.20837 3.28973 3.30897 3.32865 3.81755 3.99261 4.05282 4.26906 4.33507 4.41679 4.54072 4.65830 4.78928 4.99854 5.01751 5.11855 5.14013 5.20854 5.27898 5.32528 5.43480 5.47897 5.51343 5.60864 5.71822 5.86975 5.93037 6.00494 6.04533 6.07014 6.14179 6.19547 6.31307 6.35898 6.43391 6.50502 6.57683 6.63826 6.80432 6.97838 7.09109 7.27475 7.53454 7.83967 7.94579 8.06554 8.57863 8.92324 9.47369 10.96032 Molecular weight = 361.17amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.001976 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.765760 B =14169.872382 C =15161.320048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.180 3.820 3 H 0.000 1.000 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.529 5.529 13 C 0.068 3.932 14 C -0.114 4.114 15 C -0.010 4.010 16 C 0.257 3.743 17 N -0.493 5.493 18 C 0.018 3.982 19 C -0.014 4.014 20 C 0.026 3.974 21 C -0.090 4.090 22 C -0.113 4.113 23 C 0.058 3.942 24 F -0.129 7.129 25 C 0.082 3.918 26 F -0.126 7.126 27 C -0.135 4.135 28 N -0.555 5.555 29 H 0.422 0.578 30 C -0.101 4.101 31 C 0.049 3.951 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.103 0.897 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.174 0.826 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -8.560 23.733 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.074 3.926 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.254 5.254 13 C -0.060 4.060 14 C -0.152 4.152 15 C -0.031 4.031 16 C -0.006 4.006 17 N -0.211 5.211 18 C -0.133 4.133 19 C -0.128 4.128 20 C 0.024 3.976 21 C -0.108 4.108 22 C -0.132 4.132 23 C 0.037 3.963 24 F -0.107 7.107 25 C 0.062 3.938 26 F -0.104 7.104 27 C -0.154 4.154 28 N -0.158 5.158 29 H 0.261 0.739 30 C -0.140 4.140 31 C -0.079 4.079 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.119 0.881 41 H 0.191 0.809 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.159 0.841 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.865 -8.231 23.748 25.429 hybrid contribution -0.042 0.147 -0.816 0.830 sum 3.823 -8.084 22.932 24.614 Atomic orbital electron populations 1.21980 0.97919 1.00399 0.98822 1.19640 0.92136 0.92131 0.88714 0.98221 1.20863 1.43193 0.95789 0.94553 0.90122 1.24982 0.94264 0.97955 0.95774 1.69884 1.41604 1.36389 1.05440 0.86976 0.79485 0.86490 0.77235 1.20432 1.21429 1.18870 1.62057 1.12563 1.48984 1.01790 1.21896 0.88205 0.97863 0.98070 1.21764 1.00392 0.99550 0.93508 1.19944 0.97808 0.97203 0.88101 1.23506 0.99976 0.80605 0.96553 1.70245 1.18270 1.31305 1.01242 1.22437 1.04023 0.86737 1.00103 1.19281 1.12301 0.93510 0.87674 1.17704 0.97564 0.88933 0.93421 1.20997 0.98799 0.96694 0.94356 1.21005 1.00723 0.90858 1.00600 1.17746 1.05643 0.80515 0.92354 1.91541 1.93939 1.36691 1.88538 1.17470 1.02980 0.84898 0.88466 1.91563 1.89888 1.55873 1.73079 1.21020 1.03115 0.89824 1.01483 1.43229 1.50576 1.08723 1.13264 0.73874 1.21608 0.92995 1.01247 0.98161 1.22101 1.00764 0.94526 0.90551 0.92826 0.96049 0.93231 0.92547 0.87863 0.95913 0.91664 0.91779 0.88122 0.80868 0.83486 0.83110 0.84108 0.91541 0.91453 0.95696 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.72 37.15 0.32 -2.39 16 2 C 0.18 4.00 1.67 -68.87 -0.11 3.88 16 3 H 0.00 0.00 5.73 -51.93 -0.30 -0.29 16 4 C -0.51 -13.20 7.22 -34.44 -0.25 -13.45 16 5 H 0.08 2.32 7.87 -52.49 -0.41 1.91 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -26.09 13.96 55.43 0.77 -25.32 16 8 Si 0.87 20.71 26.40 -169.99 -4.49 16.22 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.03 6.44 56.52 0.36 -5.66 16 12 N -0.53 -9.97 4.52 -228.08 -1.03 -11.00 16 13 C 0.07 1.21 5.16 -3.83 -0.02 1.19 16 14 C -0.11 -1.55 5.16 -26.65 -0.14 -1.68 16 15 C -0.01 -0.13 2.73 -91.65 -0.25 -0.38 16 16 C 0.26 3.14 6.87 -155.29 -1.07 2.07 16 17 N -0.49 -6.43 11.22 -10.53 -0.12 -6.55 16 18 C 0.02 0.19 11.28 -17.47 -0.20 -0.01 16 19 C -0.01 -0.13 6.96 -82.08 -0.57 -0.70 16 20 C 0.03 0.20 5.87 -104.97 -0.62 -0.41 16 21 C -0.09 -0.54 9.57 -39.20 -0.38 -0.91 16 22 C -0.11 -0.68 10.01 -39.58 -0.40 -1.08 16 23 C 0.06 0.49 7.31 -39.29 -0.29 0.21 16 24 F -0.13 -1.25 17.17 2.25 0.04 -1.21 16 25 C 0.08 0.77 7.30 -39.42 -0.29 0.48 16 26 F -0.13 -1.36 17.17 2.25 0.04 -1.32 16 27 C -0.13 -1.13 9.69 -39.14 -0.38 -1.51 16 28 N -0.56 -5.67 5.82 -6.87 -0.04 -5.71 16 29 H 0.42 3.63 7.32 -40.82 -0.30 3.33 16 30 C -0.10 -1.32 5.36 -26.65 -0.14 -1.46 16 31 C 0.05 0.77 5.29 -3.83 -0.02 0.75 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.37 6.70 -51.93 -0.35 0.02 16 34 H 0.05 1.05 7.17 -51.93 -0.37 0.67 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.10 2.16 6.49 -51.93 -0.34 1.83 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.17 1.23 7.31 -52.49 -0.38 0.84 16 42 H 0.15 0.52 7.05 -52.49 -0.37 0.15 16 43 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 44 H 0.14 1.03 7.29 -52.48 -0.38 0.65 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 1.15 6.31 -51.92 -0.33 0.83 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -30.30 388.43 -10.32 -40.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.46 Total: 1.92 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -4.88 Total: -13.51 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.41 Total: -48.58 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.49 Total: 16.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.30 -10.32 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072232578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.744 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds