Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47738 * 2 1 4 4 C 1.50702 * 109.47056 * 240.00120 * 2 1 3 5 5 H 1.08002 * 120.00225 * 275.20153 * 4 2 1 6 6 C 1.37881 * 120.00045 * 95.20220 * 4 2 1 7 7 N 1.31506 * 120.00256 * 174.57163 * 6 4 2 8 8 Si 1.86800 * 119.99604 * 354.57265 * 6 4 2 9 9 H 1.48504 * 109.47104 * 84.91621 * 8 6 4 10 10 H 1.48499 * 109.47035 * 204.90982 * 8 6 4 11 11 H 1.48498 * 109.47567 * 324.91073 * 8 6 4 12 12 N 1.46901 * 109.47229 * 120.00287 * 2 1 3 13 13 C 1.46848 * 111.00101 * 170.78606 * 12 2 1 14 14 C 1.53041 * 109.52053 * 185.84280 * 13 12 2 15 15 C 1.53121 * 109.27622 * 300.81794 * 14 13 12 16 16 C 1.50701 * 109.52297 * 177.55996 * 15 14 13 17 17 N 1.30581 * 125.50886 * 145.00891 * 16 15 14 18 18 C 1.33821 * 109.53929 * 179.89408 * 17 16 15 19 19 C 1.36053 * 107.89173 * 0.37234 * 18 17 16 20 20 C 1.47916 * 126.75373 * 179.75185 * 19 18 17 21 21 C 1.39552 * 120.10460 * 0.03620 * 20 19 18 22 22 C 1.37956 * 119.92454 * 179.97438 * 21 20 19 23 23 C 1.38515 * 120.14215 * 359.97438 * 22 21 20 24 24 F 1.35104 * 119.89202 * 179.97438 * 23 22 21 25 25 C 1.38754 * 120.21804 * 359.97438 * 23 22 21 26 26 F 1.35101 * 119.96598 * 180.02562 * 25 23 22 27 27 C 1.38152 * 120.06598 * 359.72894 * 25 23 22 28 28 N 1.35105 * 125.51019 * 325.32625 * 16 15 14 29 29 H 0.97002 * 126.45254 * 359.97438 * 28 16 15 30 30 C 1.53120 * 109.15798 * 57.66259 * 15 14 13 31 31 C 1.46844 * 111.00143 * 294.99969 * 12 2 1 32 32 H 1.08998 * 109.47637 * 186.03358 * 1 2 3 33 33 H 1.09002 * 109.47218 * 306.03754 * 1 2 3 34 34 H 1.09005 * 109.47139 * 66.03306 * 1 2 3 35 35 H 0.97000 * 120.00690 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46209 * 305.85530 * 13 12 2 37 37 H 1.08997 * 109.46056 * 65.82759 * 13 12 2 38 38 H 1.09003 * 109.49907 * 180.88268 * 14 13 12 39 39 H 1.08995 * 109.53805 * 60.78532 * 14 13 12 40 40 H 1.08998 * 109.58043 * 297.72260 * 15 14 13 41 41 H 1.08001 * 126.04812 * 180.15324 * 18 17 16 42 42 H 1.07994 * 120.03556 * 359.97162 * 21 20 19 43 43 H 1.08000 * 119.92276 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.06857 * 180.27390 * 27 25 23 45 45 H 1.08998 * 109.50362 * 182.40194 * 30 15 14 46 46 H 1.08997 * 109.50646 * 62.28174 * 30 15 14 47 47 H 1.09002 * 109.46252 * 294.17459 * 31 12 2 48 48 H 1.09008 * 109.45908 * 54.15167 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1323 -1.7858 -1.2302 6 6 2.3641 0.0125 -2.3567 7 7 2.9024 -0.5936 -3.3922 8 14 2.0492 1.8530 -2.4115 9 1 3.1903 2.5693 -1.7869 10 1 1.9047 2.2886 -3.8238 11 1 0.8023 2.1642 -1.6675 12 7 2.0196 -0.6926 1.1994 13 6 3.4709 -0.9052 1.1287 14 6 3.9221 -1.7535 2.3198 15 6 3.5557 -1.0338 3.6207 16 6 3.9436 -1.8917 4.7974 17 7 4.3884 -1.4511 5.9434 18 6 4.6308 -2.4855 6.7570 19 6 4.3298 -3.6278 6.0819 20 6 4.4490 -5.0125 6.5880 21 6 4.9109 -5.2469 7.8838 22 6 5.0202 -6.5399 8.3522 23 6 4.6720 -7.6059 7.5392 24 9 4.7815 -8.8702 8.0029 25 6 4.2110 -7.3797 6.2502 26 9 3.8723 -8.4232 5.4618 27 6 4.0923 -6.0882 5.7743 28 7 3.8930 -3.2413 4.8352 29 1 3.6036 -3.8274 4.1186 30 6 2.0457 -0.7814 3.6472 31 6 1.6489 0.0387 2.4176 32 1 -0.3634 -1.0219 0.1080 33 1 -0.3634 0.6046 0.8310 34 1 -0.3634 0.4175 -0.9391 35 1 3.1355 -0.0851 -4.1847 36 1 3.7175 -1.4215 0.2010 37 1 3.9807 0.0578 1.1548 38 1 5.0016 -1.8980 2.2755 39 1 3.4237 -2.7223 2.2870 40 1 4.0850 -0.0824 3.6734 41 1 5.0033 -2.4245 7.7689 42 1 5.1825 -4.4169 8.5192 43 1 5.3781 -6.7212 9.3549 44 1 3.7294 -5.9118 4.7724 45 1 1.7844 -0.2314 4.5513 46 1 1.5171 -1.7346 3.6350 47 1 2.1672 0.9974 2.4377 48 1 0.5720 0.2079 2.4261 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072232578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -31.150419 kcal Electronic energy + Delta-G solvation = -31445.854816 eV Core-core repulsion = 26943.199023 eV Total energy + Delta-G solvation = -4502.655793 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.166 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.57121 -49.65046 -43.22278 -40.09672 -39.68672 -36.33516 -34.23923 -33.90706 -32.67030 -31.93646 -31.81051 -31.11216 -28.64575 -27.29651 -25.59573 -24.34742 -24.04093 -23.74213 -22.32672 -21.60773 -21.26323 -20.53733 -19.52943 -18.99611 -18.57390 -18.00000 -17.79855 -17.41342 -17.11629 -16.29712 -16.08922 -16.06128 -15.66404 -15.59249 -15.53003 -15.41985 -15.13869 -14.91952 -14.85872 -14.62040 -14.28623 -14.21810 -14.06612 -13.92082 -13.38171 -13.33440 -13.20908 -13.00292 -12.68315 -12.44339 -12.39326 -12.17536 -12.11028 -11.91646 -11.75964 -11.60384 -11.28611 -11.13258 -11.10362 -10.98256 -10.66102 -10.46818 -10.10258 -8.95405 -8.81065 -8.28308 -6.29424 -0.50123 -0.09164 1.09415 1.31062 1.35216 1.44547 1.95756 2.00221 2.33195 2.51148 2.68998 3.00556 3.14042 3.23293 3.33858 3.43906 3.57218 3.75346 3.90100 3.91311 3.97232 4.21166 4.27743 4.34372 4.44704 4.49590 4.50510 4.53552 4.63544 4.67203 4.75708 4.78240 4.80013 4.87529 4.89407 4.93590 4.99737 5.02241 5.07975 5.12996 5.19223 5.32707 5.35727 5.37087 5.54152 5.61492 5.68926 5.71153 6.12551 6.30255 6.42253 6.72935 6.80983 7.02676 7.36191 8.88067 Molecular weight = 361.17amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.001976 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.765760 B =14169.872382 C =15161.320048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.180 3.820 3 H -0.006 1.006 4 C -0.495 4.495 5 H 0.039 0.961 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.930 3.070 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.244 1.244 12 N -0.534 5.534 13 C 0.071 3.929 14 C -0.101 4.101 15 C 0.000 4.000 16 C 0.241 3.759 17 N -0.516 5.516 18 C 0.007 3.993 19 C -0.004 4.004 20 C 0.016 3.984 21 C -0.073 4.073 22 C -0.101 4.101 23 C 0.047 3.953 24 F -0.139 7.139 25 C 0.057 3.943 26 F -0.142 7.142 27 C -0.137 4.137 28 N -0.553 5.553 29 H 0.427 0.573 30 C -0.091 4.091 31 C 0.048 3.952 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.205 0.795 42 H 0.181 0.819 43 H 0.183 0.817 44 H 0.144 0.856 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -7.459 27.420 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.012 0.988 4 C -0.534 4.534 5 H 0.057 0.943 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.755 3.245 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.167 1.167 12 N -0.259 5.259 13 C -0.058 4.058 14 C -0.139 4.139 15 C -0.020 4.020 16 C -0.022 4.022 17 N -0.235 5.235 18 C -0.143 4.143 19 C -0.118 4.118 20 C 0.014 3.986 21 C -0.091 4.091 22 C -0.120 4.120 23 C 0.026 3.974 24 F -0.118 7.118 25 C 0.037 3.963 26 F -0.121 7.121 27 C -0.157 4.157 28 N -0.156 5.156 29 H 0.267 0.733 30 C -0.129 4.129 31 C -0.080 4.080 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.222 0.778 42 H 0.198 0.802 43 H 0.200 0.800 44 H 0.161 0.839 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.662 -7.137 27.461 28.608 hybrid contribution 0.065 -0.332 -1.866 1.897 sum 3.727 -7.469 25.594 26.921 Atomic orbital electron populations 1.21865 0.96136 1.00944 0.99637 1.19553 0.93477 0.91334 0.88427 0.98825 1.21018 1.42007 0.94066 0.96306 0.94311 1.25762 0.94414 1.02582 0.95467 1.70032 1.43902 1.38261 1.06364 0.86009 0.80219 0.80967 0.77315 1.19973 1.21532 1.16693 1.61981 1.12845 1.49172 1.01946 1.21783 0.87975 0.97707 0.98311 1.21604 1.00912 0.99037 0.92350 1.19712 0.97588 0.97007 0.87727 1.23136 1.01589 0.81127 0.96386 1.70196 1.18762 1.32728 1.01846 1.22966 1.04126 0.86021 1.01209 1.19521 1.11052 0.94115 0.87116 1.17767 0.98599 0.87875 0.94376 1.21387 0.96569 0.97622 0.93566 1.21349 0.99274 0.89919 1.01431 1.18081 1.06012 0.80815 0.92459 1.91513 1.94067 1.37586 1.88590 1.17718 1.04626 0.84911 0.89060 1.91514 1.90296 1.56619 1.73642 1.21083 1.03036 0.89689 1.01862 1.43237 1.50218 1.08290 1.13833 0.73259 1.21515 0.93119 1.01049 0.97253 1.22205 1.01286 0.94677 0.89812 0.93002 0.92815 0.94247 0.92657 0.91942 0.96730 0.90761 0.91084 0.88602 0.77826 0.80215 0.79990 0.83858 0.89927 0.91238 0.95648 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.72 71.98 0.63 -4.38 16 2 C 0.18 7.92 1.67 44.17 0.07 8.00 16 3 H -0.01 -0.26 5.73 -2.39 -0.01 -0.28 16 4 C -0.50 -26.80 7.22 25.60 0.18 -26.61 16 5 H 0.04 2.37 7.87 -2.91 -0.02 2.35 16 6 C 0.02 0.87 5.47 84.66 0.46 1.33 16 7 N -0.95 -57.41 13.96 21.45 0.30 -57.11 16 8 Si 0.93 43.02 26.40 68.60 1.81 44.83 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.24 -10.37 6.44 99.48 0.64 -9.73 16 12 N -0.53 -19.99 4.52 -875.51 -3.95 -23.94 16 13 C 0.07 2.59 5.16 86.33 0.45 3.03 16 14 C -0.10 -2.70 5.16 30.65 0.16 -2.54 16 15 C 0.00 0.00 2.73 -11.46 -0.03 -0.03 16 16 C 0.24 5.41 6.87 138.09 0.95 6.36 16 17 N -0.52 -12.22 11.22 -187.23 -2.10 -14.33 16 18 C 0.01 0.12 11.28 83.88 0.95 1.07 16 19 C 0.00 -0.06 6.96 40.29 0.28 0.22 16 20 C 0.02 0.21 5.87 -20.09 -0.12 0.09 16 21 C -0.07 -0.59 9.57 22.52 0.22 -0.37 16 22 C -0.10 -0.88 10.01 22.27 0.22 -0.65 16 23 C 0.05 0.72 7.31 22.46 0.16 0.89 16 24 F -0.14 -2.57 17.17 44.97 0.77 -1.80 16 25 C 0.06 1.03 7.30 22.37 0.16 1.20 16 26 F -0.14 -3.16 17.17 44.97 0.77 -2.39 16 27 C -0.14 -2.15 9.69 22.56 0.22 -1.93 16 28 N -0.55 -10.26 5.82 -175.64 -1.02 -11.28 16 29 H 0.43 6.78 7.32 -92.71 -0.68 6.10 16 30 C -0.09 -2.16 5.36 30.65 0.16 -1.99 16 31 C 0.05 1.42 5.29 86.33 0.46 1.87 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.75 6.70 -2.39 -0.02 1.73 16 34 H 0.04 1.60 7.17 -2.38 -0.02 1.58 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.06 2.78 6.49 -2.39 -0.02 2.77 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.80 7.30 -2.39 -0.02 1.78 16 40 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.21 1.97 7.31 -2.91 -0.02 1.95 16 42 H 0.18 0.28 7.05 -2.91 -0.02 0.25 16 43 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 44 H 0.14 2.04 7.29 -2.91 -0.02 2.02 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 2.32 6.31 -2.38 -0.02 2.31 16 Total: -1.00 -68.72 388.43 2.43 -66.29 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.27 Total: 14.19 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 5.58 Total: -14.45 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -6.78 Total: -106.67 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.54 Total: -4.19 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.81 Total: 44.83 kcal Total: -68.72 2.43 -66.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072232578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.143 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds