Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48496 * 109.47171 * 269.99609 * 3 2 1 5 5 H 1.48500 * 109.46824 * 29.99698 * 3 2 1 6 6 H 1.48506 * 109.46832 * 149.99446 * 3 2 1 7 7 C 1.38646 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00136 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.35764 * 117.00099 * 185.08159 * 9 7 2 11 11 C 1.38902 * 120.05467 * 354.37431 * 10 9 7 12 12 C 1.38069 * 119.94127 * 180.27767 * 11 10 9 13 13 C 1.38433 * 120.05683 * 359.47057 * 12 11 10 14 14 Cl 1.73599 * 119.94230 * 180.25474 * 13 12 11 15 15 C 1.38389 * 120.11242 * 0.27864 * 13 12 11 16 16 C 1.38114 * 120.05199 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.02226 * 179.97438 * 16 15 13 18 18 N 1.46906 * 109.46769 * 259.99375 * 17 16 15 19 19 C 1.46841 * 110.99865 * 66.05152 * 18 17 16 20 20 C 1.53041 * 109.52430 * 174.16156 * 19 18 17 21 21 C 1.53117 * 109.27979 * 59.17559 * 20 19 18 22 22 C 1.53128 * 109.15968 * 302.34920 * 21 20 19 23 23 H 1.09002 * 109.49689 * 297.71395 * 22 21 20 24 24 C 1.50694 * 109.50026 * 177.63557 * 22 21 20 25 25 C 1.35319 * 126.12785 * 95.00006 * 24 22 21 26 26 C 1.39873 * 107.92226 * 179.97438 * 25 24 22 27 27 N 1.30835 * 108.19790 * 0.02562 * 26 25 24 28 28 N 1.34943 * 126.12872 * 274.68483 * 24 22 21 29 29 H 0.97006 * 126.03855 * 0.03750 * 28 24 22 30 30 C 1.46843 * 111.00147 * 301.83545 * 18 17 16 31 31 H 0.97001 * 119.99694 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.02826 * 0.02700 * 11 10 9 33 33 H 1.08001 * 119.97066 * 179.75067 * 12 11 10 34 34 H 1.07997 * 119.96788 * 179.97438 * 15 13 12 35 35 H 1.08998 * 109.47603 * 19.99246 * 17 16 15 36 36 H 1.09001 * 109.47605 * 139.99665 * 17 16 15 37 37 H 1.09000 * 109.46316 * 294.17653 * 19 18 17 38 38 H 1.08998 * 109.46496 * 54.14272 * 19 18 17 39 39 H 1.08996 * 109.50246 * 179.11739 * 20 19 18 40 40 H 1.09005 * 109.50239 * 299.23460 * 20 19 18 41 41 H 1.08998 * 109.52287 * 62.24828 * 21 20 19 42 42 H 1.09000 * 109.52220 * 182.37935 * 21 20 19 43 43 H 1.08002 * 126.03743 * 359.94372 * 25 24 22 44 44 H 1.07996 * 125.90026 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.46659 * 305.86016 * 30 18 17 46 46 H 1.09007 * 109.45832 * 65.82835 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7002 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3683 0.0005 10 6 2.0699 -3.5046 0.1082 11 6 3.4574 -3.4394 0.0944 12 6 4.2027 -4.5969 0.1983 13 6 3.5686 -5.8207 0.3272 14 17 4.5088 -7.2736 0.4642 15 6 2.1865 -5.8878 0.3465 16 6 1.4363 -4.7334 0.2366 17 6 -0.0687 -4.8074 0.2571 18 7 -0.5816 -4.7291 -1.1173 19 6 -0.1844 -5.9095 -1.8952 20 6 -0.8542 -5.8649 -3.2705 21 6 -0.4312 -4.5854 -3.9975 22 6 -0.8130 -3.3728 -3.1440 23 1 -1.8954 -3.3416 -3.0197 24 6 -0.3481 -2.1116 -3.8254 25 6 -1.0901 -1.3237 -4.6377 26 6 -0.2854 -0.2595 -5.0575 27 7 0.8974 -0.4036 -4.5171 28 7 0.8808 -1.5624 -3.7301 29 1 1.6226 -1.9102 -3.2107 30 6 -0.1444 -3.4897 -1.7724 31 1 -0.4850 0.8401 -0.0004 32 1 3.9526 -2.4844 -0.0017 33 1 5.2815 -4.5471 0.1835 34 1 1.6942 -6.8438 0.4467 35 1 -0.3802 -5.7496 0.7079 36 1 -0.4655 -3.9767 0.8407 37 1 0.8985 -5.9156 -2.0187 38 1 -0.4948 -6.8124 -1.3692 39 1 -0.5469 -6.7332 -3.8533 40 1 -1.9374 -5.8728 -3.1482 41 1 0.6473 -4.5953 -4.1545 42 1 -0.9391 -4.5288 -4.9604 43 1 -2.1213 -1.4880 -4.9135 44 1 -0.5881 0.5426 -5.7142 45 1 -0.4256 -2.6350 -1.1572 46 1 0.9385 -3.5071 -1.8966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = 62.001161 kcal Electronic energy + Delta-G solvation = -31798.550103 eV Core-core repulsion = 27715.897252 eV Total energy + Delta-G solvation = -4082.652851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87234 -39.90617 -38.10361 -36.97209 -35.69500 -34.04725 -32.47284 -31.84930 -30.50436 -30.32209 -28.88442 -28.31991 -26.06659 -25.50220 -23.26572 -22.89382 -21.74127 -21.22578 -20.79739 -19.83651 -19.18461 -18.21866 -17.23697 -16.92228 -15.61128 -15.24564 -15.13262 -14.72413 -14.57932 -14.36385 -14.22491 -14.16014 -13.85633 -13.51701 -13.43189 -13.17761 -13.06765 -12.87284 -12.63139 -12.48994 -12.15425 -12.02738 -11.78197 -11.49477 -11.27677 -11.20337 -11.03393 -10.77003 -10.71891 -10.57612 -10.55356 -10.47783 -10.20130 -10.16250 -10.01890 -9.60343 -9.01510 -8.95450 -8.44776 -8.11486 -7.89607 -7.38638 -6.64872 -4.23705 1.80784 1.92586 2.42404 2.70440 3.04843 3.06720 3.11050 3.28086 3.43535 3.82466 4.12543 4.40165 4.84599 4.92209 4.98547 5.06976 5.14960 5.28845 5.30453 5.32225 5.39484 5.50505 5.62202 5.76480 5.79696 5.82060 5.93208 5.95909 5.99481 6.06676 6.12192 6.14908 6.17917 6.26858 6.31964 6.36717 6.50009 6.52676 6.67197 6.73885 6.79550 6.87140 7.00376 7.10031 7.11914 7.41667 7.49563 7.59407 7.78576 7.81460 8.18616 8.81320 9.40199 10.49866 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.008103 B = 0.005052 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3454.885933 B = 5541.261956 C = 7665.243597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.056 3.944 3 Si 0.930 3.070 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.405 4.405 8 H 0.090 0.910 9 O -0.157 6.157 10 C 0.159 3.841 11 C -0.227 4.227 12 C -0.059 4.059 13 C -0.125 4.125 14 Cl -0.106 7.106 15 C -0.052 4.052 16 C -0.190 4.190 17 C 0.114 3.886 18 N -0.523 5.523 19 C 0.049 3.951 20 C -0.113 4.113 21 C -0.110 4.110 22 C -0.025 4.025 23 H 0.098 0.902 24 C 0.117 3.883 25 C -0.284 4.284 26 C 0.039 3.961 27 N -0.298 5.298 28 N -0.450 5.450 29 H 0.439 0.561 30 C 0.060 3.940 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.139 0.861 44 H 0.175 0.825 45 H 0.116 0.884 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 -8.343 -4.970 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.152 4.152 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.480 4.480 8 H 0.108 0.892 9 O -0.059 6.059 10 C 0.103 3.897 11 C -0.247 4.247 12 C -0.078 4.078 13 C -0.152 4.152 14 Cl -0.078 7.078 15 C -0.072 4.072 16 C -0.193 4.193 17 C -0.014 4.014 18 N -0.245 5.245 19 C -0.079 4.079 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.045 4.045 23 H 0.116 0.884 24 C -0.014 4.014 25 C -0.314 4.314 26 C -0.147 4.147 27 N -0.120 5.120 28 N -0.158 5.158 29 H 0.283 0.717 30 C -0.067 4.067 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.192 0.808 45 H 0.134 0.866 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.845 -7.698 -4.870 9.148 hybrid contribution 1.275 0.304 0.255 1.335 sum 0.430 -7.393 -4.615 8.726 Atomic orbital electron populations 1.69963 1.05712 1.28107 1.43565 1.25144 0.95745 0.98511 0.95781 0.85861 0.79067 0.80489 0.79140 1.19412 1.20181 1.19294 1.21272 0.91784 0.80665 1.54317 0.89222 1.84097 1.33848 1.11199 1.76737 1.19143 0.90004 0.88003 0.92536 1.21119 0.93736 0.98530 1.11267 1.20656 0.99167 0.90579 0.97430 1.20317 0.91337 0.86397 1.17198 1.98284 1.73701 1.38539 1.97287 1.20440 0.91220 0.97330 0.98227 1.19595 0.97301 0.90512 1.11887 1.20897 0.87819 1.02572 0.90092 1.62304 1.58353 1.01896 1.01991 1.22106 0.97988 0.93772 0.94060 1.21553 1.01303 0.96877 0.95320 1.21617 1.00931 0.94011 0.98310 1.19981 1.01719 0.88575 0.94266 0.88391 1.20918 0.86598 0.96327 0.97559 1.21077 1.01638 0.99308 1.09336 1.23658 0.91467 0.99201 1.00346 1.77268 1.22142 1.02061 1.10574 1.46295 1.11653 1.19477 1.38330 0.71691 1.22386 0.97002 0.93673 0.93660 0.91727 0.84724 0.86549 0.86228 0.90926 0.89249 0.94641 0.91309 0.91820 0.91069 0.92578 0.91663 0.84287 0.80836 0.86562 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.79 13.67 55.48 0.76 -21.03 16 2 C 0.06 1.37 5.49 -17.51 -0.10 1.27 16 3 Si 0.93 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.40 -9.73 9.49 30.88 0.29 -9.43 16 8 H 0.09 2.07 5.20 -52.49 -0.27 1.79 16 9 O -0.16 -3.59 5.67 0.02 0.00 -3.59 16 10 C 0.16 3.22 5.13 -39.11 -0.20 3.02 16 11 C -0.23 -4.36 9.17 -39.40 -0.36 -4.72 16 12 C -0.06 -1.01 9.82 -39.57 -0.39 -1.40 16 13 C -0.13 -2.08 6.32 -39.45 -0.25 -2.33 16 14 Cl -0.11 -1.56 28.95 -51.86 -1.50 -3.06 16 15 C -0.05 -0.86 8.68 -39.57 -0.34 -1.20 16 16 C -0.19 -3.38 4.08 -104.44 -0.43 -3.81 16 17 C 0.11 1.90 5.39 -4.97 -0.03 1.87 16 18 N -0.52 -8.38 4.86 -236.12 -1.15 -9.52 16 19 C 0.05 0.67 5.00 -3.83 -0.02 0.66 16 20 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 21 C -0.11 -1.46 5.27 -26.61 -0.14 -1.60 16 22 C -0.02 -0.39 2.74 -91.69 -0.25 -0.64 16 23 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 24 C 0.12 2.01 5.92 -82.27 -0.49 1.53 16 25 C -0.28 -4.58 10.72 -40.01 -0.43 -5.01 16 26 C 0.04 0.64 12.03 -17.36 -0.21 0.43 16 27 N -0.30 -5.72 12.70 30.62 0.39 -5.33 16 28 N -0.45 -8.44 7.13 33.47 0.24 -8.20 16 29 H 0.44 8.35 8.15 -182.61 -1.49 6.86 16 30 C 0.06 1.08 2.79 -3.84 -0.01 1.07 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.14 2.60 5.64 -52.49 -0.30 2.31 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.12 1.72 8.04 -52.49 -0.42 1.29 16 35 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 36 H 0.09 1.70 7.86 -51.93 -0.41 1.30 16 37 H 0.04 0.54 7.01 -51.93 -0.36 0.18 16 38 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 45 H 0.12 2.59 6.66 -51.93 -0.35 2.25 16 46 H 0.04 0.69 5.07 -51.92 -0.26 0.42 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -25.86 380.79 -11.26 -37.12 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -7.21 Total: 15.06 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.51 Total: -21.81 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.24 Total: -44.09 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: 0.00 Total: -3.59 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -25.86 -11.26 -37.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.125 kcal (2) G-P(sol) polarization free energy of solvation -25.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds