Wall clock time and date at job start Tue Mar 31 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99868 * 2 1 4 4 C 1.53008 * 109.46966 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46649 * 65.00247 * 4 3 2 6 6 C 1.35758 * 116.99450 * 180.02562 * 5 4 3 7 7 C 1.38904 * 119.60576 * 179.73032 * 6 5 4 8 8 C 1.38333 * 119.18293 * 179.79100 * 7 6 5 9 9 C 1.39365 * 118.42469 * 0.47358 * 8 7 6 10 10 N 1.40177 * 120.42478 * 179.77062 * 9 8 7 11 11 C 1.34779 * 119.99726 * 325.01495 * 10 9 8 12 12 O 1.21597 * 120.00177 * 4.67463 * 11 10 9 13 13 N 1.34774 * 120.00100 * 184.67483 * 11 10 9 14 14 C 1.40184 * 120.00271 * 179.97438 * 13 11 10 15 15 C 1.40398 * 125.97148 * 359.71414 * 14 13 11 16 16 C 1.35248 * 107.87114 * 179.82755 * 15 14 13 17 17 N 1.34970 * 107.85265 * 0.42983 * 16 15 14 18 18 C 1.46493 * 125.97421 * 179.70490 * 17 16 15 19 19 C 1.50698 * 109.47082 * 125.00211 * 18 17 16 20 20 H 1.08000 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99714 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00309 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47267 * 89.99778 * 23 21 19 25 25 H 1.48503 * 109.47092 * 210.00043 * 23 21 19 26 26 H 1.48506 * 109.46914 * 329.99677 * 23 21 19 27 27 N 1.31215 * 125.97295 * 180.02562 * 14 13 11 28 28 C 1.38653 * 119.15253 * 359.74739 * 9 8 7 29 29 N 1.31951 * 120.73747 * 0.02562 * 28 9 8 30 30 H 1.09000 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47169 * 299.99714 * 1 2 3 32 32 H 1.09006 * 109.46875 * 59.99774 * 1 2 3 33 33 H 1.09005 * 109.46822 * 60.00563 * 3 2 1 34 34 H 1.08995 * 109.47805 * 300.00300 * 3 2 1 35 35 H 1.08996 * 109.47014 * 185.00295 * 4 3 2 36 36 H 1.08994 * 109.47081 * 305.00491 * 4 3 2 37 37 H 1.07997 * 120.40970 * 359.97438 * 7 6 5 38 38 H 1.07994 * 120.78510 * 180.19717 * 8 7 6 39 39 H 0.96998 * 119.99891 * 145.01195 * 10 9 8 40 40 H 0.97008 * 119.99816 * 359.97438 * 13 11 10 41 41 H 1.08000 * 126.06640 * 359.96079 * 15 14 13 42 42 H 1.07997 * 126.07531 * 180.15999 * 16 15 14 43 43 H 1.08997 * 109.47437 * 244.99871 * 18 17 16 44 44 H 1.09000 * 109.47581 * 5.00391 * 18 17 16 45 45 H 0.97002 * 119.99893 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.63045 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2202 6 6 5.3016 0.3975 -1.3806 7 6 5.7791 -0.1913 -2.5445 8 6 7.1422 -0.3683 -2.7006 9 6 7.9869 0.0452 -1.6722 10 7 9.3746 -0.1185 -1.7843 11 6 9.8769 -1.1965 -2.4185 12 8 9.1287 -1.9826 -2.9670 13 7 11.2084 -1.4031 -2.4448 14 6 11.7309 -2.5246 -3.1040 15 6 10.9861 -3.5110 -3.7700 16 6 11.8545 -4.4165 -4.2750 17 7 13.1016 -4.0277 -3.9357 18 6 14.3433 -4.7270 -4.2753 19 6 15.2747 -3.7799 -4.9869 20 1 14.9719 -2.7592 -5.1685 21 6 16.5136 -4.2163 -5.4062 22 7 16.8822 -5.4593 -5.1855 23 14 17.6684 -3.0421 -6.2878 24 1 18.5249 -2.3494 -5.2920 25 1 18.5244 -3.8050 -7.2315 26 1 16.8739 -2.0385 -7.0407 27 7 13.0011 -2.8389 -3.2017 28 6 7.4373 0.6210 -0.5370 29 7 6.1320 0.7781 -0.4249 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.9785 2.1765 0.0903 36 1 3.8508 0.5684 0.8426 37 1 5.0950 -0.5044 -3.3192 38 1 7.5418 -0.8204 -3.5963 39 1 9.9733 0.5440 -1.4054 40 1 11.8053 -0.7758 -2.0075 41 1 9.9106 -3.5402 -3.8643 42 1 11.5957 -5.2969 -4.8444 43 1 14.8188 -5.0870 -3.3629 44 1 14.1182 -5.5722 -4.9256 45 1 17.7540 -5.7662 -5.4802 46 1 8.0848 0.9446 0.2645 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:58 Heat of formation + Delta-G solvation = 24.774420 kcal Electronic energy + Delta-G solvation = -30010.300464 eV Core-core repulsion = 25517.616926 eV Total energy + Delta-G solvation = -4492.683537 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.158 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31553 -40.63388 -39.78548 -38.64926 -37.65659 -35.20747 -34.79233 -33.38709 -32.51057 -31.33957 -30.83834 -29.40323 -28.99601 -26.80925 -26.63250 -24.56110 -23.91808 -22.96363 -22.64557 -21.68720 -20.45209 -20.01891 -18.89193 -18.31018 -17.68996 -17.30639 -16.99474 -16.60426 -16.35961 -16.19988 -15.80286 -15.60817 -15.42166 -15.15820 -14.80358 -14.62873 -14.22797 -13.99729 -13.81746 -13.63921 -13.56062 -12.91939 -12.85018 -12.75052 -12.39292 -12.27940 -12.04995 -11.93224 -11.77612 -11.43927 -11.09255 -10.91703 -10.76849 -10.49170 -10.30883 -10.25442 -10.19992 -10.00456 -9.86399 -9.55992 -9.52606 -8.65198 -8.27742 -8.11969 -7.48155 -6.25989 -4.31182 0.85327 1.05152 2.12694 2.54452 2.74528 2.98014 3.22501 3.26998 3.28433 3.32752 3.46597 3.53429 3.75109 4.01721 4.14789 4.31840 4.47792 4.59321 4.67251 4.76183 4.77639 4.88769 4.91079 5.03309 5.05481 5.09284 5.24423 5.26612 5.39293 5.45153 5.52245 5.74049 5.81148 5.99037 6.13793 6.36042 6.45817 6.48124 6.63738 6.80236 6.92505 7.01204 7.05323 7.38444 7.55604 7.65250 7.72530 7.88643 8.01983 8.35244 8.59753 8.78095 9.34579 10.82756 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.001369 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.997442 B =20449.784047 C =20898.507471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.060 3.940 4 C 0.074 3.926 5 O -0.299 6.299 6 C 0.303 3.697 7 C -0.167 4.167 8 C -0.040 4.040 9 C 0.084 3.916 10 N -0.677 5.677 11 C 0.714 3.286 12 O -0.552 6.552 13 N -0.636 5.636 14 C 0.272 3.728 15 C -0.286 4.286 16 C 0.053 3.947 17 N -0.318 5.318 18 C 0.258 3.742 19 C -0.529 4.529 20 H 0.069 0.931 21 C 0.063 3.937 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.304 5.304 28 C 0.115 3.885 29 N -0.524 5.524 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.267 0.733 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.412 14.997 10.702 33.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.017 4.017 4 C -0.002 4.002 5 O -0.206 6.206 6 C 0.124 3.876 7 C -0.188 4.188 8 C -0.067 4.067 9 C -0.014 4.014 10 N -0.327 5.327 11 C 0.414 3.586 12 O -0.426 6.426 13 N -0.286 5.286 14 C 0.018 3.982 15 C -0.317 4.317 16 C -0.097 4.097 17 N -0.100 5.100 18 C 0.141 3.859 19 C -0.568 4.568 20 H 0.087 0.913 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.735 3.265 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.135 5.135 28 C -0.044 4.044 29 N -0.248 5.248 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.246 0.754 40 H 0.244 0.756 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.047 14.521 11.017 32.615 hybrid contribution 0.813 0.872 -0.738 1.402 sum -26.233 15.393 10.279 32.106 Atomic orbital electron populations 1.22766 0.80811 1.03065 0.99940 1.87984 1.19845 1.27154 1.95404 1.22653 0.91894 0.85758 1.01350 1.22629 0.92463 0.98861 0.86217 1.86300 1.17773 1.76715 1.39816 1.19776 0.83854 0.93146 0.90831 1.21036 0.95719 1.04024 0.98060 1.21697 0.91506 0.94920 0.98586 1.18315 0.82963 1.04410 0.95682 1.42295 1.05041 1.24654 1.60713 1.15564 0.81838 0.81413 0.79828 1.90872 1.57346 1.46117 1.48302 1.41271 1.05349 1.25487 1.56466 1.18734 0.91747 0.89314 0.98404 1.21501 1.01296 0.97612 1.11294 1.22571 0.85043 1.00792 1.01337 1.49080 1.07267 1.16089 1.37568 1.19754 0.77326 0.91697 0.97160 1.21257 1.00067 0.97934 1.37517 0.91298 1.24942 0.97742 0.95515 0.95827 1.69919 1.21432 1.15453 1.46517 0.86327 0.80302 0.80514 0.79349 1.20346 1.20967 1.19730 1.77332 1.14505 1.02401 1.19285 1.22120 0.89848 0.97748 0.94642 1.67268 1.04426 1.22911 1.30164 0.89427 0.94065 0.93917 0.91069 0.92168 0.90028 0.90667 0.83714 0.82100 0.75408 0.75573 0.82130 0.81430 0.93698 0.92466 0.92308 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.43 10.67 -40.09 -0.43 -3.86 16 3 C 0.06 0.39 6.32 37.16 0.23 0.62 16 4 C 0.07 0.59 5.69 37.16 0.21 0.80 16 5 O -0.30 -3.22 10.08 -23.84 -0.24 -3.46 16 6 C 0.30 3.37 7.49 -17.15 -0.13 3.24 16 7 C -0.17 -1.77 10.04 -39.30 -0.39 -2.17 16 8 C -0.04 -0.44 8.80 -39.13 -0.34 -0.79 16 9 C 0.08 0.85 6.32 -83.47 -0.53 0.32 16 10 N -0.68 -6.31 5.36 -14.09 -0.08 -6.38 16 11 C 0.71 9.62 8.39 -86.92 -0.73 8.89 16 12 O -0.55 -9.07 10.95 5.28 0.06 -9.02 16 13 N -0.64 -9.10 5.45 -15.51 -0.08 -9.19 16 14 C 0.27 5.23 8.11 -154.37 -1.25 3.98 16 15 C -0.29 -5.48 9.60 -39.83 -0.38 -5.86 16 16 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.24 3.67 -62.57 -0.23 -7.47 16 18 C 0.26 6.46 6.26 -5.20 -0.03 6.43 16 19 C -0.53 -14.53 9.24 -34.44 -0.32 -14.85 16 20 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 23 Si 0.91 21.12 29.54 -169.99 -5.02 16.09 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 N -0.30 -6.79 12.42 31.44 0.39 -6.40 16 28 C 0.11 1.04 11.11 -17.35 -0.19 0.85 16 29 N -0.52 -5.53 9.20 -13.17 -0.12 -5.65 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.16 1.97 6.31 -52.49 -0.33 1.64 16 39 H 0.41 2.30 8.84 -40.82 -0.36 1.94 16 40 H 0.41 4.54 8.84 -40.82 -0.36 4.18 16 41 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 42 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -34.69 400.56 -7.99 -42.68 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.97 Total: 5.77 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -3.04 Total: 5.18 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.62 Total: -59.43 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.61 Total: -16.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.69 -7.99 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.454 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds