Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48502 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47175 * 299.99642 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00036 * 3 2 1 7 7 C 1.37878 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00066 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00405 * 66.04879 * 10 9 7 12 12 C 1.52997 * 109.47436 * 199.83160 * 11 10 9 13 13 O 1.42904 * 109.47309 * 65.10149 * 12 11 10 14 14 C 1.46907 * 110.99830 * 190.00288 * 10 9 7 15 15 C 1.52993 * 109.47365 * 75.73368 * 14 10 9 16 16 C 1.52998 * 109.47495 * 174.85053 * 15 14 10 17 17 C 1.52993 * 109.47495 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47182 * 179.97438 * 17 16 15 19 19 C 1.35902 * 116.99713 * 179.97438 * 18 17 16 20 20 C 1.38752 * 120.06019 * 0.02562 * 19 18 17 21 21 C 1.38119 * 119.94557 * 180.02562 * 20 19 18 22 22 C 1.38283 * 120.05715 * 0.02562 * 21 20 19 23 23 C 1.38243 * 120.11105 * 359.97438 * 22 21 20 24 24 C 1.38164 * 120.05639 * 359.68085 * 23 22 21 25 25 C 1.50702 * 120.03086 * 180.29767 * 24 23 22 26 26 F 1.39896 * 109.46977 * 0.32158 * 25 24 23 27 27 F 1.39893 * 109.47328 * 120.32404 * 25 24 23 28 28 F 1.39901 * 109.46966 * 240.32373 * 25 24 23 29 29 H 0.96997 * 120.00715 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46809 * 60.00264 * 9 7 2 31 31 H 1.09000 * 109.47075 * 300.00832 * 9 7 2 32 32 H 1.08998 * 109.46825 * 319.82943 * 11 10 9 33 33 H 1.08993 * 109.46952 * 79.82579 * 11 10 9 34 34 H 1.08996 * 109.47233 * 185.10948 * 12 11 10 35 35 H 1.09006 * 109.46881 * 305.10564 * 12 11 10 36 36 H 0.96701 * 113.99482 * 179.97438 * 13 12 11 37 37 H 1.08995 * 109.46706 * 315.72998 * 14 10 9 38 38 H 1.09003 * 109.46501 * 195.73588 * 14 10 9 39 39 H 1.09007 * 109.46883 * 54.84961 * 15 14 10 40 40 H 1.09006 * 109.47014 * 294.85167 * 15 14 10 41 41 H 1.08997 * 109.47023 * 59.99871 * 16 15 14 42 42 H 1.09006 * 109.47083 * 300.00072 * 16 15 14 43 43 H 1.08998 * 109.47207 * 299.99842 * 17 16 15 44 44 H 1.09007 * 109.46883 * 59.99908 * 17 16 15 45 45 H 1.08002 * 120.02693 * 359.97140 * 20 19 18 46 46 H 1.08009 * 119.96989 * 179.97438 * 21 20 19 47 47 H 1.08008 * 119.94632 * 179.97438 * 22 21 20 48 48 H 1.08001 * 119.97366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9710 -3.6540 1.2528 12 6 4.2498 -4.4678 1.0448 13 8 5.0950 -3.7960 0.1086 14 6 1.5212 -4.8935 -0.2388 15 6 1.1572 -5.0087 -1.7203 16 6 0.5607 -6.3909 -1.9930 17 6 0.1972 -6.5063 -3.4747 18 8 -0.3593 -7.7976 -3.7294 19 6 -0.7385 -8.0649 -5.0068 20 6 -0.5777 -7.1042 -5.9950 21 6 -0.9644 -7.3781 -7.2923 22 6 -1.5118 -8.6084 -7.6068 23 6 -1.6731 -9.5673 -6.6241 24 6 -1.2813 -9.3008 -5.3262 25 6 -1.4512 -10.3489 -4.2568 26 9 -2.0149 -11.5000 -4.8174 27 9 -0.2032 -10.6610 -3.7072 28 9 -2.2934 -9.8587 -3.2530 29 1 -0.4851 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 3.2312 -2.6384 1.5508 33 1 2.3677 -4.1183 2.0328 34 1 4.7722 -4.5730 1.9956 35 1 3.9937 -5.4549 0.6598 36 1 5.9262 -4.2562 -0.0714 37 1 0.6135 -4.9371 0.3630 38 1 2.1807 -5.7160 0.0384 39 1 2.0532 -4.8736 -2.3262 40 1 0.4267 -4.2409 -1.9757 41 1 -0.3352 -6.5260 -1.3871 42 1 1.2912 -7.1587 -1.7376 43 1 -0.5331 -5.7386 -3.7305 44 1 1.0935 -6.3714 -4.0802 45 1 -0.1514 -6.1427 -5.7497 46 1 -0.8398 -6.6304 -8.0618 47 1 -1.8139 -8.8206 -8.6218 48 1 -2.1013 -10.5273 -6.8720 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072309012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -217.384640 kcal Electronic energy + Delta-G solvation = -32221.177815 eV Core-core repulsion = 27247.384325 eV Total energy + Delta-G solvation = -4973.793490 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.24024 -47.80132 -47.65046 -40.61034 -38.09093 -37.55101 -35.77539 -33.97587 -32.51273 -32.29309 -30.54984 -29.06555 -28.24813 -26.17801 -25.86427 -23.78036 -22.40943 -22.33693 -22.03149 -20.88490 -19.66092 -19.03675 -18.56770 -18.52840 -17.72276 -17.03445 -16.58191 -16.28845 -16.12965 -15.49134 -15.28969 -14.93577 -14.67108 -14.57503 -14.48779 -14.39195 -14.15707 -14.13308 -13.91167 -13.84913 -13.79120 -13.33230 -13.09214 -12.93095 -12.75756 -12.52954 -12.09946 -12.03363 -11.91445 -11.86317 -11.53645 -11.38192 -11.08678 -10.98020 -10.80298 -10.66663 -10.58453 -10.35516 -10.08853 -9.67097 -9.63697 -9.53132 -9.08440 -8.72674 -8.40597 -7.18934 -5.99547 -3.99356 0.56663 0.92573 2.51138 2.76977 3.11938 3.33073 3.40518 3.47596 3.57763 3.85122 4.31163 4.41246 4.45908 4.49523 4.67699 4.73469 4.81882 4.83414 4.86957 4.98494 5.06018 5.19655 5.30489 5.35555 5.42774 5.55065 5.62984 5.67318 5.74369 5.77438 5.84271 5.86740 5.97160 5.98909 6.07896 6.14512 6.24193 6.27348 6.52750 6.66643 6.72562 6.95302 7.30732 7.35331 7.87877 8.07362 8.17281 8.24423 8.60422 9.11277 9.64766 11.11433 Molecular weight = 361.17amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.001958 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.174698 B =14297.769395 C =15409.586289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.192 3.808 10 N -0.527 5.527 11 C 0.058 3.942 12 C 0.085 3.915 13 O -0.550 6.550 14 C 0.056 3.944 15 C -0.108 4.108 16 C -0.115 4.115 17 C 0.058 3.942 18 O -0.307 6.307 19 C 0.187 3.813 20 C -0.212 4.212 21 C -0.046 4.046 22 C -0.165 4.165 23 C -0.037 4.037 24 C -0.226 4.226 25 C 0.518 3.482 26 F -0.183 7.183 27 F -0.174 7.174 28 F -0.173 7.173 29 H 0.259 0.741 30 H 0.032 0.968 31 H -0.012 1.012 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.361 0.639 37 H 0.025 0.975 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -21.302 -12.622 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.067 3.933 10 N -0.251 5.251 11 C -0.070 4.070 12 C 0.006 3.994 13 O -0.352 6.352 14 C -0.072 4.072 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.016 4.016 18 O -0.219 6.219 19 C 0.139 3.861 20 C -0.230 4.230 21 C -0.064 4.064 22 C -0.183 4.183 23 C -0.055 4.055 24 C -0.228 4.228 25 C 0.464 3.536 26 F -0.164 7.164 27 F -0.155 7.155 28 F -0.154 7.154 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.205 0.795 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.668 -20.795 -12.758 24.453 hybrid contribution 0.191 0.409 0.756 0.880 sum -1.477 -20.386 -12.002 23.702 Atomic orbital electron populations 1.69969 1.06036 1.26542 1.51623 1.24993 0.94831 0.99289 0.95659 0.86470 0.80273 0.83504 0.77390 1.19569 1.21104 1.21239 1.21282 0.93833 0.89811 1.49109 0.91417 1.19767 0.90007 0.87546 0.95945 1.62029 1.27545 1.02463 1.33102 1.22021 0.92170 1.01834 0.91021 1.22252 0.91779 0.94786 0.90571 1.86760 1.32627 1.51049 1.64761 1.22000 0.96605 0.93446 0.95170 1.21429 1.01319 0.94167 0.97648 1.21553 1.02025 0.99169 0.92582 1.23090 0.97963 0.81549 0.98986 1.86142 1.75279 1.36852 1.23659 1.18619 0.90787 0.92027 0.84634 1.21392 1.07681 1.00453 0.93500 1.21236 0.92887 0.96526 0.95728 1.21055 1.03674 0.93881 0.99736 1.20869 0.94561 0.99983 0.90111 1.19341 1.14327 0.94024 0.95139 1.17986 0.74163 0.80231 0.81230 1.93139 1.85536 1.52660 1.85063 1.93220 1.41930 1.93490 1.86862 1.93231 1.71648 1.87581 1.62967 0.93111 0.95006 0.99437 0.88789 0.94950 0.94751 0.94699 0.79481 0.95713 0.92474 0.90921 0.91160 0.90905 0.91015 0.91180 0.91294 0.83932 0.84707 0.84751 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.50 -14.19 8.23 -34.44 -0.28 -14.47 16 8 H 0.07 1.96 7.31 -52.49 -0.38 1.58 16 9 C 0.19 4.96 4.55 -4.98 -0.02 4.94 16 10 N -0.53 -11.22 4.31 -236.08 -1.02 -12.24 16 11 C 0.06 1.13 5.17 -3.82 -0.02 1.11 16 12 C 0.08 1.32 7.23 37.16 0.27 1.59 16 13 O -0.55 -9.35 13.61 -35.23 -0.48 -9.83 16 14 C 0.06 0.98 4.81 -3.82 -0.02 0.96 16 15 C -0.11 -1.65 5.25 -26.74 -0.14 -1.79 16 16 C -0.12 -1.43 5.58 -26.74 -0.15 -1.58 16 17 C 0.06 0.66 4.74 37.15 0.18 0.83 16 18 O -0.31 -3.84 9.05 -19.43 -0.18 -4.01 16 19 C 0.19 2.11 6.57 -39.21 -0.26 1.85 16 20 C -0.21 -1.96 9.04 -39.44 -0.36 -2.32 16 21 C -0.05 -0.34 10.04 -39.61 -0.40 -0.73 16 22 C -0.17 -1.14 10.04 -39.56 -0.40 -1.54 16 23 C -0.04 -0.31 9.43 -39.61 -0.37 -0.68 16 24 C -0.23 -2.43 5.38 -104.47 -0.56 -2.99 16 25 C 0.52 6.00 2.99 36.01 0.11 6.11 16 26 F -0.18 -1.90 15.97 2.25 0.04 -1.86 16 27 F -0.17 -2.20 16.95 2.25 0.04 -2.16 16 28 F -0.17 -2.24 16.95 2.25 0.04 -2.20 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.87 6.72 -51.93 -0.35 0.52 16 31 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 32 H 0.09 2.08 6.58 -51.93 -0.34 1.74 16 33 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.49 6.66 -51.93 -0.35 0.15 16 36 H 0.36 4.08 9.12 45.56 0.42 4.50 16 37 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 38 H 0.06 0.87 6.45 -51.93 -0.34 0.54 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.20 6.96 -51.93 -0.36 0.83 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.75 7.66 -51.93 -0.40 0.35 16 44 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 45 H 0.14 1.17 6.30 -52.49 -0.33 0.84 16 46 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 48 H 0.14 0.89 7.16 -52.49 -0.38 0.51 16 LS Contribution 405.17 15.07 6.11 6.11 Total: -1.00 -33.16 405.17 -8.39 -41.55 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.13 Total: 1.12 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.52 Total: -7.30 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.28 Total: -38.30 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.66 Total: -13.85 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.16 -8.39 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072309012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.832 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds