Wall clock time and date at job start Tue Mar 31 2020 05:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99727 * 2 1 4 4 H 1.48502 * 109.46817 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47175 * 299.99642 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00036 * 3 2 1 7 7 C 1.37878 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00066 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00405 * 66.04879 * 10 9 7 12 12 C 1.52997 * 109.47436 * 199.83160 * 11 10 9 13 13 O 1.42904 * 109.47309 * 65.10149 * 12 11 10 14 14 C 1.46907 * 110.99830 * 190.00288 * 10 9 7 15 15 C 1.52993 * 109.47365 * 75.73368 * 14 10 9 16 16 C 1.52998 * 109.47495 * 174.85053 * 15 14 10 17 17 C 1.52993 * 109.47495 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47182 * 179.97438 * 17 16 15 19 19 C 1.35902 * 116.99713 * 179.97438 * 18 17 16 20 20 C 1.38752 * 120.06019 * 0.02562 * 19 18 17 21 21 C 1.38119 * 119.94557 * 180.02562 * 20 19 18 22 22 C 1.38283 * 120.05715 * 0.02562 * 21 20 19 23 23 C 1.38243 * 120.11105 * 359.97438 * 22 21 20 24 24 C 1.38164 * 120.05639 * 359.68085 * 23 22 21 25 25 C 1.50702 * 120.03086 * 180.29767 * 24 23 22 26 26 F 1.39896 * 109.46977 * 0.32158 * 25 24 23 27 27 F 1.39893 * 109.47328 * 120.32404 * 25 24 23 28 28 F 1.39901 * 109.46966 * 240.32373 * 25 24 23 29 29 H 0.96997 * 120.00715 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46809 * 60.00264 * 9 7 2 31 31 H 1.09000 * 109.47075 * 300.00832 * 9 7 2 32 32 H 1.08998 * 109.46825 * 319.82943 * 11 10 9 33 33 H 1.08993 * 109.46952 * 79.82579 * 11 10 9 34 34 H 1.08996 * 109.47233 * 185.10948 * 12 11 10 35 35 H 1.09006 * 109.46881 * 305.10564 * 12 11 10 36 36 H 0.96701 * 113.99482 * 179.97438 * 13 12 11 37 37 H 1.08995 * 109.46706 * 315.72998 * 14 10 9 38 38 H 1.09003 * 109.46501 * 195.73588 * 14 10 9 39 39 H 1.09007 * 109.46883 * 54.84961 * 15 14 10 40 40 H 1.09006 * 109.47014 * 294.85167 * 15 14 10 41 41 H 1.08997 * 109.47023 * 59.99871 * 16 15 14 42 42 H 1.09006 * 109.47083 * 300.00072 * 16 15 14 43 43 H 1.08998 * 109.47207 * 299.99842 * 17 16 15 44 44 H 1.09007 * 109.46883 * 59.99908 * 17 16 15 45 45 H 1.08002 * 120.02693 * 359.97140 * 20 19 18 46 46 H 1.08009 * 119.96989 * 179.97438 * 21 20 19 47 47 H 1.08008 * 119.94632 * 179.97438 * 22 21 20 48 48 H 1.08001 * 119.97366 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9710 -3.6540 1.2528 12 6 4.2498 -4.4678 1.0448 13 8 5.0950 -3.7960 0.1086 14 6 1.5212 -4.8935 -0.2388 15 6 1.1572 -5.0087 -1.7203 16 6 0.5607 -6.3909 -1.9930 17 6 0.1972 -6.5063 -3.4747 18 8 -0.3593 -7.7976 -3.7294 19 6 -0.7385 -8.0649 -5.0068 20 6 -0.5777 -7.1042 -5.9950 21 6 -0.9644 -7.3781 -7.2923 22 6 -1.5118 -8.6084 -7.6068 23 6 -1.6731 -9.5673 -6.6241 24 6 -1.2813 -9.3008 -5.3262 25 6 -1.4512 -10.3489 -4.2568 26 9 -2.0149 -11.5000 -4.8174 27 9 -0.2032 -10.6610 -3.7072 28 9 -2.2934 -9.8587 -3.2530 29 1 -0.4851 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 3.2312 -2.6384 1.5508 33 1 2.3677 -4.1183 2.0328 34 1 4.7722 -4.5730 1.9956 35 1 3.9937 -5.4549 0.6598 36 1 5.9262 -4.2562 -0.0714 37 1 0.6135 -4.9371 0.3630 38 1 2.1807 -5.7160 0.0384 39 1 2.0532 -4.8736 -2.3262 40 1 0.4267 -4.2409 -1.9757 41 1 -0.3352 -6.5260 -1.3871 42 1 1.2912 -7.1587 -1.7376 43 1 -0.5331 -5.7386 -3.7305 44 1 1.0935 -6.3714 -4.0802 45 1 -0.1514 -6.1427 -5.7497 46 1 -0.8398 -6.6304 -8.0618 47 1 -1.8139 -8.8206 -8.6218 48 1 -2.1013 -10.5273 -6.8720 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072309012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:45 Heat of formation + Delta-G solvation = -239.335176 kcal Electronic energy + Delta-G solvation = -32222.129662 eV Core-core repulsion = 27247.384325 eV Total energy + Delta-G solvation = -4974.745337 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.14585 -48.68618 -48.60319 -41.35398 -39.24386 -38.67680 -37.09468 -35.36666 -34.40074 -33.08310 -31.30289 -30.48041 -29.82008 -27.48060 -26.93315 -24.99582 -24.10668 -23.13530 -23.03129 -21.96509 -21.25013 -19.84006 -19.49044 -19.40558 -18.65586 -18.48119 -18.14408 -17.45383 -16.99601 -16.88186 -16.21141 -16.07224 -15.95343 -15.73755 -15.56593 -15.46014 -15.37040 -15.06483 -15.03230 -14.79285 -14.77190 -14.55268 -14.38285 -13.98166 -13.94021 -13.67607 -13.65980 -13.34025 -13.15429 -13.02685 -12.72360 -12.66829 -12.57141 -12.38205 -12.17077 -12.05354 -11.93475 -11.85881 -11.58644 -11.30526 -11.19638 -10.69420 -10.58531 -10.32402 -9.42817 -8.93153 -8.19150 -6.27386 -0.09264 0.27042 1.39262 1.39965 1.54553 1.66591 1.94567 2.41265 2.47874 2.75370 3.03029 3.12643 3.27490 3.42237 3.60899 3.71917 3.84282 3.86925 3.96895 4.12775 4.16183 4.24902 4.30181 4.33785 4.39342 4.42469 4.52410 4.55773 4.68060 4.71848 4.73767 4.78753 4.82845 4.96387 5.05333 5.06675 5.20532 5.22023 5.31065 5.32945 5.37873 5.39368 5.64319 5.69710 6.10841 6.16470 6.38484 6.71175 6.89965 7.17076 7.41740 8.91861 Molecular weight = 361.17amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.001958 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.174698 B =14297.769395 C =15409.586289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.209 3.791 10 N -0.535 5.535 11 C 0.051 3.949 12 C 0.093 3.907 13 O -0.581 6.581 14 C 0.055 3.945 15 C -0.097 4.097 16 C -0.104 4.104 17 C 0.062 3.938 18 O -0.326 6.326 19 C 0.160 3.840 20 C -0.221 4.221 21 C -0.043 4.043 22 C -0.156 4.156 23 C -0.041 4.041 24 C -0.244 4.244 25 C 0.515 3.485 26 F -0.177 7.177 27 F -0.183 7.183 28 F -0.185 7.185 29 H 0.263 0.737 30 H 0.010 0.990 31 H -0.043 1.043 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.386 0.614 37 H 0.016 0.984 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.148 0.852 46 H 0.164 0.836 47 H 0.168 0.832 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -22.064 -14.351 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.083 3.917 10 N -0.259 5.259 11 C -0.077 4.077 12 C 0.015 3.985 13 O -0.388 6.388 14 C -0.073 4.073 15 C -0.135 4.135 16 C -0.142 4.142 17 C -0.013 4.013 18 O -0.239 6.239 19 C 0.113 3.887 20 C -0.240 4.240 21 C -0.061 4.061 22 C -0.173 4.173 23 C -0.058 4.058 24 C -0.246 4.246 25 C 0.461 3.539 26 F -0.158 7.158 27 F -0.165 7.165 28 F -0.167 7.167 29 H 0.072 0.928 30 H 0.028 0.972 31 H -0.026 1.026 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.234 0.766 37 H 0.034 0.966 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.166 0.834 46 H 0.181 0.819 47 H 0.186 0.814 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.571 -21.589 -14.491 26.008 hybrid contribution -0.161 0.565 1.245 1.377 sum -0.732 -21.024 -13.246 24.860 Atomic orbital electron populations 1.70084 1.07535 1.27673 1.52284 1.25864 0.95721 1.02983 0.95098 0.85395 0.78873 0.78931 0.77795 1.19214 1.20213 1.20377 1.21490 0.93423 0.91251 1.49187 0.92453 1.19385 0.90017 0.88962 0.93350 1.61993 1.26660 1.02839 1.34401 1.22114 0.94215 1.00859 0.90536 1.22171 0.89992 0.94262 0.92074 1.86683 1.34341 1.52514 1.65213 1.22134 0.96589 0.92292 0.96312 1.21277 1.00689 0.95235 0.96315 1.21373 1.01810 0.97396 0.93639 1.22994 0.98557 0.81563 0.98154 1.86080 1.75951 1.36980 1.24887 1.18883 0.92309 0.92975 0.84544 1.21588 1.07982 1.00316 0.94077 1.21640 0.91605 0.97408 0.95467 1.21482 1.01965 0.93037 1.00860 1.21190 0.94119 1.01215 0.89321 1.19482 1.15615 0.93666 0.95810 1.18184 0.73641 0.80761 0.81295 1.93140 1.85397 1.52397 1.84851 1.93192 1.42547 1.93616 1.87119 1.93200 1.72006 1.87790 1.63691 0.92780 0.97169 1.02583 0.92324 0.93847 0.91703 0.92620 0.76572 0.96594 0.89543 0.90946 0.93662 0.91516 0.89899 0.91200 0.90027 0.83429 0.81871 0.81449 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.52 -30.04 8.23 25.60 0.21 -29.83 16 8 H 0.06 3.41 7.31 -2.91 -0.02 3.38 16 9 C 0.21 11.30 4.55 85.56 0.39 11.69 16 10 N -0.53 -23.20 4.31 -900.81 -3.88 -27.08 16 11 C 0.05 1.98 5.17 86.30 0.45 2.43 16 12 C 0.09 2.71 7.23 71.98 0.52 3.23 16 13 O -0.58 -18.80 13.61 -148.98 -2.03 -20.83 16 14 C 0.05 1.89 4.81 86.30 0.41 2.31 16 15 C -0.10 -3.01 5.25 30.59 0.16 -2.85 16 16 C -0.10 -2.57 5.58 30.59 0.17 -2.40 16 17 C 0.06 1.39 4.74 71.98 0.34 1.73 16 18 O -0.33 -8.21 9.05 -92.44 -0.84 -9.05 16 19 C 0.16 3.56 6.57 22.51 0.15 3.70 16 20 C -0.22 -3.84 9.04 22.36 0.20 -3.64 16 21 C -0.04 -0.52 10.04 22.25 0.22 -0.30 16 22 C -0.16 -1.67 10.04 22.28 0.22 -1.45 16 23 C -0.04 -0.59 9.43 22.25 0.21 -0.38 16 24 C -0.24 -5.09 5.38 -19.77 -0.11 -5.20 16 25 C 0.52 11.95 2.99 71.24 0.21 12.17 16 26 F -0.18 -3.58 15.97 44.97 0.72 -2.86 16 27 F -0.18 -4.69 16.95 44.97 0.76 -3.92 16 28 F -0.19 -4.91 16.95 44.97 0.76 -4.15 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.01 0.59 6.72 -2.39 -0.02 0.57 16 31 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 32 H 0.06 2.67 6.58 -2.39 -0.02 2.66 16 33 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.40 6.66 -2.38 -0.02 1.38 16 36 H 0.39 7.81 9.12 -74.06 -0.68 7.13 16 37 H 0.02 0.58 8.00 -2.39 -0.02 0.56 16 38 H 0.09 2.49 6.45 -2.39 -0.02 2.47 16 39 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.04 1.62 6.96 -2.38 -0.02 1.60 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 44 H 0.08 1.59 7.66 -2.38 -0.02 1.57 16 45 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 46 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 48 H 0.16 1.64 7.16 -2.91 -0.02 1.62 16 Total: -1.00 -74.29 405.17 2.36 -71.93 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.32 Total: 13.36 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.23 Total: -8.28 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.59 Total: -83.71 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -2.86 Total: -29.88 kcal Atomic # 9 Polarization: -13.18 SS G_CDS: 2.24 Total: -10.93 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.29 2.36 -71.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072309012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.401 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds