Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 5 5 S 1.65597 * 119.99944 * 95.00236 * 4 2 1 6 6 O 1.42104 * 104.27209 * 181.06893 * 5 4 2 7 7 O 1.42099 * 104.27492 * 308.91910 * 5 4 2 8 8 C 1.81393 * 104.45407 * 64.99587 * 5 4 2 9 9 C 1.53004 * 109.47331 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.47077 * 179.97438 * 9 8 5 11 11 H 1.08000 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99712 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00451 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99834 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47000 * 90.00353 * 14 12 10 16 16 H 1.48508 * 109.47197 * 210.00023 * 14 12 10 17 17 H 1.48492 * 109.47357 * 329.99809 * 14 12 10 18 18 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 19 19 C 1.38329 * 119.87309 * 79.72647 * 18 2 1 20 20 C 1.38020 * 120.11559 * 179.76331 * 19 18 2 21 21 C 1.39339 * 119.87863 * 0.51404 * 20 19 18 22 22 C 1.48388 * 120.11975 * 179.72487 * 21 20 19 23 23 C 1.39703 * 120.91913 * 179.73951 * 22 21 20 24 24 N 1.32204 * 118.95493 * 179.74055 * 23 22 21 25 25 C 1.31821 * 120.94072 * 0.56554 * 24 23 22 26 26 N 1.31829 * 122.04548 * 359.67911 * 25 24 23 27 27 C 1.32198 * 120.93859 * 0.02717 * 26 25 24 28 28 C 1.39332 * 119.75702 * 359.74151 * 21 20 19 29 29 C 1.38013 * 119.88054 * 0.02562 * 28 21 20 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 33 33 H 0.97000 * 119.99461 * 274.99349 * 4 2 1 34 34 H 1.09004 * 109.46862 * 299.99765 * 8 5 4 35 35 H 1.09001 * 109.47432 * 60.00051 * 8 5 4 36 36 H 1.09001 * 109.46934 * 300.00293 * 9 8 5 37 37 H 1.09001 * 109.46720 * 59.99738 * 9 8 5 38 38 H 0.97000 * 120.00443 * 179.97438 * 13 12 10 39 39 H 1.08000 * 119.94126 * 0.02562 * 19 18 2 40 40 H 1.08004 * 120.06064 * 180.24758 * 20 19 18 41 41 H 1.08002 * 120.52405 * 0.02562 * 23 22 21 42 42 H 1.08005 * 118.97939 * 179.70091 * 25 24 23 43 43 H 1.08005 * 120.51853 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.05889 * 179.97438 * 28 21 20 45 45 H 1.08007 * 119.94200 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 16 2.4122 0.1774 -2.5505 6 8 2.8122 -0.8074 -3.4937 7 8 1.2751 0.9967 -2.7846 8 6 3.8313 1.1874 -2.0441 9 6 4.2941 2.0447 -3.2239 10 6 5.4727 2.8842 -2.8029 11 1 5.8537 2.8132 -1.7949 12 6 6.0644 3.7430 -3.7047 13 7 5.6007 3.8292 -4.9324 14 14 7.5257 4.7832 -3.1832 15 1 8.7829 4.0380 -3.4464 16 1 7.5313 6.0517 -3.9554 17 1 7.4247 5.0871 -1.7332 18 6 2.0324 -0.7104 1.2304 19 6 2.0604 -2.0930 1.2646 20 6 2.5241 -2.7487 2.3871 21 6 2.9544 -2.0155 3.4911 22 6 3.4482 -2.7151 4.7030 23 6 3.8887 -1.9966 5.8172 24 7 4.3159 -2.6595 6.8783 25 6 4.3400 -3.9774 6.8897 26 7 3.9383 -4.6933 5.8581 27 6 3.4908 -4.1104 4.7592 28 6 2.9190 -0.6232 3.4531 29 6 2.4580 0.0223 2.3237 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.1110 -1.6561 -1.1950 34 1 3.5399 1.8344 -1.2166 35 1 4.6459 0.5364 -1.7269 36 1 4.5855 1.3973 -4.0510 37 1 3.4796 2.6956 -3.5415 38 1 6.0167 4.4337 -5.5667 39 1 1.7228 -2.6602 0.4099 40 1 2.5493 -3.8281 2.4114 41 1 3.8760 -0.9167 5.8136 42 1 4.6998 -4.4866 7.7716 43 1 3.1638 -4.7035 3.9179 44 1 3.2510 -0.0501 4.3062 45 1 2.4297 1.1016 2.2933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074974936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -9.877907 kcal Electronic energy + Delta-G solvation = -28685.833812 eV Core-core repulsion = 24602.107757 eV Total energy + Delta-G solvation = -4083.726055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50490 -39.84654 -36.84759 -36.37649 -35.46739 -34.24398 -33.92782 -33.45316 -31.47173 -31.19543 -30.39341 -28.81030 -25.65713 -25.39366 -25.25645 -23.14031 -22.64869 -21.68177 -21.03431 -19.03451 -18.44104 -17.84051 -17.67019 -17.17098 -16.62815 -16.31891 -15.47183 -15.42671 -15.25959 -15.09803 -14.70894 -14.56197 -14.36871 -14.03034 -13.95482 -13.91007 -13.54843 -13.41432 -13.03415 -12.83998 -12.54912 -12.25571 -11.82382 -11.73913 -11.64324 -11.56099 -11.39685 -11.37019 -11.31467 -11.11672 -11.03600 -10.95096 -10.60041 -10.45467 -10.40990 -9.89938 -9.68422 -9.59771 -9.33652 -9.09652 -8.59848 -8.53001 -6.15153 -4.20843 -0.07911 0.60031 0.73029 1.02594 1.29460 3.02823 3.22557 3.23967 3.30433 3.32702 3.57460 3.65778 3.71998 3.97248 4.05296 4.17998 4.21773 4.34123 4.41051 4.53448 4.57201 4.70899 4.88443 4.91583 5.03578 5.04539 5.12916 5.20109 5.22008 5.36546 5.46292 5.59573 5.61263 5.68236 5.69892 5.83444 5.89654 5.98214 6.07035 6.16556 6.29193 6.44054 6.44963 6.56436 6.98974 7.26761 7.32764 7.59347 7.77655 8.14425 8.82515 9.44102 10.95791 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.002304 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.629545 B =12147.658538 C =14013.948077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.190 3.810 3 H 0.096 0.904 4 N -1.122 6.122 5 S 2.592 3.408 6 O -0.966 6.966 7 O -0.963 6.963 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.051 4.051 22 C -0.140 4.140 23 C 0.154 3.846 24 N -0.515 5.515 25 C 0.285 3.715 26 N -0.515 5.515 27 C 0.153 3.847 28 C -0.101 4.101 29 C -0.105 4.105 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.171 0.829 42 H 0.197 0.803 43 H 0.170 0.830 44 H 0.128 0.872 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 -13.622 21.125 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.082 3.918 3 H 0.114 0.886 4 N -0.879 5.879 5 S 2.689 3.311 6 O -0.957 6.957 7 O -0.953 6.953 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.075 4.075 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.052 4.052 22 C -0.144 4.144 23 C -0.013 4.013 24 N -0.227 5.227 25 C -0.002 4.002 26 N -0.228 5.228 27 C -0.013 4.013 28 C -0.119 4.119 29 C -0.123 4.123 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.214 0.786 43 H 0.187 0.813 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.413 -13.900 20.951 26.513 hybrid contribution 1.092 0.744 0.011 1.321 sum -7.321 -13.156 20.961 25.808 Atomic orbital electron populations 1.22321 0.93689 1.02922 1.03572 1.19647 0.94900 0.95369 0.81880 0.88597 1.56046 1.82724 1.19302 1.29803 1.05630 0.77223 0.75098 0.73124 1.93559 1.84671 1.58588 1.58845 1.93546 1.47962 1.70283 1.83492 1.30454 1.16903 1.13377 1.11572 1.18961 0.98214 0.94219 0.89675 1.20988 1.14023 1.22981 0.97975 0.92076 1.25067 0.97510 0.97008 0.94906 1.69951 1.41090 1.37587 1.04158 0.86476 0.82499 0.79696 0.78649 1.20477 1.20995 1.19763 1.20170 0.97847 0.94069 0.95390 1.20877 0.99464 0.93862 0.98057 1.21131 0.98474 0.99788 0.92600 1.18405 1.01195 0.93183 0.92448 1.20581 1.01963 0.95703 0.96149 1.23418 0.89590 1.01137 0.87107 1.68423 1.15541 1.10799 1.27985 1.25041 0.91910 0.86851 0.96357 1.68421 1.11476 1.41793 1.01101 1.23403 0.90964 0.91420 0.95514 1.21145 0.99156 0.93068 0.98481 1.21027 0.98263 1.00495 0.92555 0.92075 0.91525 0.90071 0.75460 0.86431 0.86084 0.94859 0.94788 0.92513 0.85364 0.85546 0.81214 0.78646 0.81273 0.85437 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.49 37.16 0.35 -1.23 16 2 C 0.19 1.90 2.87 -69.08 -0.20 1.71 16 3 H 0.10 0.93 7.01 -51.93 -0.36 0.56 16 4 N -1.12 -13.03 5.31 -5.88 -0.03 -13.06 16 5 S 2.59 43.17 5.38 -107.50 -0.58 42.60 16 6 O -0.97 -19.19 18.08 -57.54 -1.04 -20.23 16 7 O -0.96 -18.49 17.11 -57.54 -0.98 -19.47 16 8 C -0.59 -10.69 5.90 37.16 0.22 -10.47 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.07 -0.64 4.96 -104.56 -0.52 -1.16 16 19 C -0.10 -0.82 9.14 -39.63 -0.36 -1.18 16 20 C -0.10 -0.73 9.45 -39.25 -0.37 -1.10 16 21 C -0.05 -0.39 5.88 -104.90 -0.62 -1.00 16 22 C -0.14 -1.07 5.91 -104.62 -0.62 -1.69 16 23 C 0.15 1.18 10.70 -16.84 -0.18 1.00 16 24 N -0.51 -4.52 10.42 -14.31 -0.15 -4.67 16 25 C 0.29 2.26 12.27 -92.10 -1.13 1.13 16 26 N -0.52 -4.49 10.42 -14.31 -0.15 -4.64 16 27 C 0.15 1.16 10.70 -16.85 -0.18 0.98 16 28 C -0.10 -0.73 9.45 -39.26 -0.37 -1.10 16 29 C -0.10 -0.84 9.65 -39.63 -0.38 -1.22 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.93 7.42 -51.93 -0.39 0.55 16 33 H 0.41 3.96 7.05 -34.47 -0.24 3.72 16 34 H 0.12 1.86 7.44 -51.92 -0.39 1.47 16 35 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 0.84 6.82 -52.49 -0.36 0.48 16 40 H 0.13 0.63 6.30 -52.48 -0.33 0.30 16 41 H 0.17 0.89 6.35 -52.49 -0.33 0.56 16 42 H 0.20 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.17 0.86 6.35 -52.48 -0.33 0.53 16 44 H 0.13 0.66 6.30 -52.48 -0.33 0.33 16 45 H 0.13 0.87 8.03 -52.48 -0.42 0.45 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -36.57 390.68 -11.80 -48.37 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.56 Total: 2.37 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -4.91 Total: -27.66 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.41 Total: -47.76 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.02 Total: -39.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.58 Total: 42.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.57 -11.80 -48.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074974936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.493 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds