Wall clock time and date at job start Tue Mar 31 2020 05:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46746 * 2 1 4 4 N 1.46501 * 109.46860 * 119.99265 * 2 1 3 5 5 S 1.65597 * 120.00337 * 265.00045 * 4 2 1 6 6 O 1.42101 * 104.27721 * 181.07383 * 5 4 2 7 7 O 1.42100 * 104.28150 * 308.93450 * 5 4 2 8 8 C 1.81401 * 104.44779 * 65.00279 * 5 4 2 9 9 C 1.52999 * 109.47345 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47368 * 179.97438 * 9 8 5 11 11 H 1.07994 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00084 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00187 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99924 * 0.02562 * 12 10 9 15 15 H 1.48492 * 109.47148 * 90.00014 * 14 12 10 16 16 H 1.48502 * 109.46797 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.47076 * 329.99566 * 14 12 10 18 18 C 1.50695 * 109.47403 * 239.99803 * 2 1 3 19 19 C 1.38319 * 119.88037 * 99.99964 * 18 2 1 20 20 C 1.38018 * 120.12286 * 179.97438 * 19 18 2 21 21 C 1.39332 * 119.87640 * 0.02562 * 20 19 18 22 22 C 1.48396 * 120.12063 * 180.02562 * 21 20 19 23 23 C 1.39703 * 120.91661 * 359.72057 * 22 21 20 24 24 N 1.32199 * 118.95515 * 180.25433 * 23 22 21 25 25 C 1.31829 * 120.94275 * 0.03536 * 24 23 22 26 26 N 1.31830 * 122.03777 * 359.96505 * 25 24 23 27 27 C 1.32189 * 120.94688 * 0.02562 * 26 25 24 28 28 C 1.39334 * 119.76171 * 0.27184 * 21 20 19 29 29 C 1.38020 * 119.87377 * 359.45312 * 28 21 20 30 30 H 1.09000 * 109.47279 * 300.00438 * 1 2 3 31 31 H 1.09000 * 109.46854 * 60.00367 * 1 2 3 32 32 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99765 * 85.00787 * 4 2 1 34 34 H 1.08998 * 109.47285 * 300.00427 * 8 5 4 35 35 H 1.09005 * 109.47021 * 60.00050 * 8 5 4 36 36 H 1.08998 * 109.47621 * 300.00641 * 9 8 5 37 37 H 1.09005 * 109.46678 * 60.00259 * 9 8 5 38 38 H 0.96997 * 119.99881 * 180.02562 * 13 12 10 39 39 H 1.08001 * 119.93783 * 359.95405 * 19 18 2 40 40 H 1.08000 * 120.06128 * 179.97438 * 20 19 18 41 41 H 1.08002 * 120.52305 * 0.24498 * 23 22 21 42 42 H 1.07995 * 118.97943 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.52607 * 180.02562 * 27 26 25 44 44 H 1.07997 * 120.06444 * 179.70516 * 28 21 20 45 45 H 1.08005 * 119.94301 * 180.25405 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4121 0.1774 2.5505 6 8 2.8606 -0.8026 3.4767 7 8 3.2874 1.1909 2.0752 8 6 0.8407 0.8991 3.0984 9 6 1.0749 1.7343 4.3588 10 6 -0.2305 2.3344 4.8136 11 1 -1.1366 2.1393 4.2594 12 6 -0.2679 3.1326 5.9372 13 7 -1.4072 3.6559 6.3344 14 14 1.2996 3.4707 6.8954 15 1 1.9565 4.6883 6.3560 16 1 0.9687 3.6801 8.3278 17 1 2.2196 2.3124 6.7641 18 6 2.0324 -0.7104 -1.2304 19 6 2.4585 0.0223 -2.3235 20 6 2.9201 -0.6232 -3.4527 21 6 2.9559 -2.0155 -3.4905 22 6 3.4516 -2.7151 -4.7016 23 6 3.8827 -1.9968 -5.8196 24 7 4.3122 -2.6596 -6.8797 25 6 4.3361 -3.9777 -6.8912 26 7 3.9385 -4.6933 -5.8579 27 6 3.4946 -4.1104 -4.7577 28 6 2.5196 -2.7488 -2.3889 29 6 2.0653 -2.0929 -1.2627 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.1110 -1.6560 1.1950 34 1 0.4385 1.5353 2.3100 35 1 0.1315 0.1011 3.3184 36 1 1.4768 1.0978 5.1470 37 1 1.7842 2.5323 4.1391 38 1 -1.4335 4.2177 7.1247 39 1 2.4296 1.1015 -2.2933 40 1 3.2521 -0.0501 -4.3058 41 1 3.8653 -0.9169 -5.8178 42 1 4.6927 -4.4868 -7.7743 43 1 3.1708 -4.7034 -3.9151 44 1 2.5408 -3.8282 -2.4147 45 1 1.7308 -2.6601 -0.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074974940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:55 Heat of formation + Delta-G solvation = -5.259425 kcal Electronic energy + Delta-G solvation = -28526.570043 eV Core-core repulsion = 24443.044260 eV Total energy + Delta-G solvation = -4083.525783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54566 -39.88582 -36.94143 -36.50945 -35.62469 -34.28574 -34.01462 -33.51569 -31.57463 -31.48141 -30.43742 -28.88709 -26.06203 -25.44280 -25.26794 -23.18447 -22.69247 -21.33086 -21.04869 -19.16798 -18.49937 -17.94525 -17.73721 -17.36700 -16.86005 -16.45666 -15.64658 -15.49452 -15.29995 -15.19120 -14.74871 -14.43551 -14.33590 -14.10226 -14.03903 -13.92558 -13.68588 -13.58515 -13.08008 -12.99227 -12.76578 -12.35318 -11.93354 -11.83284 -11.78966 -11.67283 -11.51268 -11.39700 -11.35701 -11.28900 -11.24903 -11.03028 -10.66374 -10.48340 -10.21307 -9.91070 -9.72448 -9.56308 -9.37678 -9.27491 -8.69648 -8.63613 -6.20018 -4.21511 -0.11871 0.55930 0.58683 0.99086 1.26120 2.90966 3.17145 3.23837 3.31544 3.35406 3.53460 3.61791 3.67892 3.93309 4.01588 4.06324 4.17918 4.30323 4.32684 4.49200 4.54514 4.61627 4.85123 4.91713 4.97321 5.00364 5.06074 5.11185 5.14992 5.32229 5.39763 5.43158 5.50667 5.58185 5.60288 5.78686 5.83317 5.93649 6.00502 6.03197 6.24388 6.27253 6.40324 6.52757 6.77163 6.86719 6.93861 7.50982 7.55308 8.32527 8.80792 9.39676 10.92233 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.029136 B = 0.001785 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.772869 B =15681.472506 C =15861.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.182 3.818 3 H 0.105 0.895 4 N -1.120 6.120 5 S 2.589 3.411 6 O -0.965 6.965 7 O -0.965 6.965 8 C -0.584 4.584 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.078 0.922 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.101 4.101 21 C -0.052 4.052 22 C -0.140 4.140 23 C 0.153 3.847 24 N -0.515 5.515 25 C 0.285 3.715 26 N -0.515 5.515 27 C 0.153 3.847 28 C -0.102 4.102 29 C -0.105 4.105 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.412 0.588 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.028 0.972 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.171 0.829 42 H 0.197 0.803 43 H 0.170 0.830 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.073 -13.455 -24.435 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.075 3.925 3 H 0.123 0.877 4 N -0.877 5.877 5 S 2.686 3.314 6 O -0.956 6.956 7 O -0.955 6.955 8 C -0.717 4.717 9 C -0.047 4.047 10 C -0.559 4.559 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.695 3.305 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.186 1.186 18 C -0.069 4.069 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.053 4.053 22 C -0.144 4.144 23 C -0.013 4.013 24 N -0.228 5.228 25 C -0.001 4.001 26 N -0.228 5.228 27 C -0.013 4.013 28 C -0.120 4.120 29 C -0.124 4.124 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.247 0.753 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.188 0.812 42 H 0.214 0.786 43 H 0.187 0.813 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.219 -13.574 -24.784 29.429 hybrid contribution -0.289 0.309 1.205 1.277 sum 7.929 -13.265 -23.579 28.192 Atomic orbital electron populations 1.22490 0.93781 1.03530 1.03763 1.19753 0.94311 0.96325 0.82111 0.87749 1.55932 1.84399 1.19665 1.27696 1.05660 0.78210 0.74545 0.72992 1.93566 1.80475 1.59278 1.62251 1.93553 1.62323 1.60206 1.79383 1.30407 1.19210 1.11803 1.10242 1.19415 1.00226 0.94825 0.90195 1.20832 0.93054 1.30294 1.11700 0.90385 1.24982 0.96187 0.95019 0.96880 1.69877 1.25243 1.32950 1.25192 0.86934 0.84089 0.79730 0.79749 1.19674 1.20755 1.18637 1.20064 0.97737 0.93963 0.95170 1.21029 0.98163 1.00516 0.92541 1.21142 0.99280 0.93068 0.98441 1.18407 1.01202 0.93184 0.92514 1.20582 1.01976 0.95704 0.96109 1.23412 0.89649 1.01126 0.87098 1.68423 1.15466 1.10813 1.28081 1.25045 0.91908 0.86838 0.96355 1.68417 1.11505 1.41810 1.01062 1.23404 0.90921 0.91420 0.95551 1.21130 0.98508 0.99799 0.92577 1.20888 0.99559 0.93871 0.98047 0.90563 0.90939 0.91488 0.75327 0.85544 0.85335 0.94931 0.95360 0.92363 0.84867 0.85436 0.81220 0.78623 0.81260 0.85518 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.46 37.16 0.35 -1.14 16 2 C 0.18 1.75 3.01 -69.08 -0.21 1.54 16 3 H 0.10 1.03 7.33 -51.92 -0.38 0.65 16 4 N -1.12 -12.34 5.31 -5.88 -0.03 -12.37 16 5 S 2.59 40.76 5.44 -107.50 -0.58 40.17 16 6 O -0.97 -18.07 18.08 -57.54 -1.04 -19.11 16 7 O -0.96 -17.83 17.39 -57.54 -1.00 -18.83 16 8 C -0.58 -9.86 5.16 37.16 0.19 -9.67 16 9 C -0.01 -0.17 4.05 -27.89 -0.11 -0.28 16 10 C -0.52 -14.05 9.66 -34.44 -0.33 -14.38 16 11 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 14 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 18 C -0.07 -0.59 4.96 -104.56 -0.52 -1.10 16 19 C -0.10 -0.81 9.65 -39.63 -0.38 -1.20 16 20 C -0.10 -0.70 9.45 -39.26 -0.37 -1.08 16 21 C -0.05 -0.38 5.88 -104.90 -0.62 -0.99 16 22 C -0.14 -1.01 5.91 -104.62 -0.62 -1.63 16 23 C 0.15 1.10 10.70 -16.85 -0.18 0.92 16 24 N -0.52 -4.29 10.42 -14.31 -0.15 -4.44 16 25 C 0.29 2.15 12.27 -92.09 -1.13 1.02 16 26 N -0.52 -4.31 10.42 -14.32 -0.15 -4.45 16 27 C 0.15 1.11 10.70 -16.85 -0.18 0.93 16 28 C -0.10 -0.71 9.45 -39.25 -0.37 -1.08 16 29 C -0.11 -0.81 9.14 -39.63 -0.36 -1.17 16 30 H 0.08 0.71 5.78 -51.93 -0.30 0.41 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.41 3.72 7.03 -34.47 -0.24 3.48 16 34 H 0.13 1.88 6.77 -51.93 -0.35 1.53 16 35 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 37 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 0.85 8.03 -52.49 -0.42 0.43 16 40 H 0.13 0.59 6.30 -52.49 -0.33 0.26 16 41 H 0.17 0.80 6.35 -52.49 -0.33 0.47 16 42 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.17 0.81 6.35 -52.49 -0.33 0.47 16 44 H 0.13 0.59 6.30 -52.49 -0.33 0.26 16 45 H 0.13 0.80 6.81 -52.48 -0.36 0.44 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -36.66 384.77 -11.42 -48.08 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.43 Total: 1.86 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -4.94 Total: -27.37 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.44 Total: -47.01 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.04 Total: -37.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 40.76 SS G_CDS: -0.58 Total: 40.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.66 -11.42 -48.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074974940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.816 kcal (2) G-P(sol) polarization free energy of solvation -36.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds