Wall clock time and date at job start Tue Mar 31 2020 05:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46746 * 2 1 4 4 N 1.46501 * 109.46860 * 119.99265 * 2 1 3 5 5 S 1.65597 * 120.00337 * 265.00045 * 4 2 1 6 6 O 1.42101 * 104.27721 * 181.07383 * 5 4 2 7 7 O 1.42100 * 104.28150 * 308.93450 * 5 4 2 8 8 C 1.81401 * 104.44779 * 65.00279 * 5 4 2 9 9 C 1.52999 * 109.47345 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47368 * 179.97438 * 9 8 5 11 11 H 1.07994 * 120.00071 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00084 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00187 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99924 * 0.02562 * 12 10 9 15 15 H 1.48492 * 109.47148 * 90.00014 * 14 12 10 16 16 H 1.48502 * 109.46797 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.47076 * 329.99566 * 14 12 10 18 18 C 1.50695 * 109.47403 * 239.99803 * 2 1 3 19 19 C 1.38319 * 119.88037 * 99.99964 * 18 2 1 20 20 C 1.38018 * 120.12286 * 179.97438 * 19 18 2 21 21 C 1.39332 * 119.87640 * 0.02562 * 20 19 18 22 22 C 1.48396 * 120.12063 * 180.02562 * 21 20 19 23 23 C 1.39703 * 120.91661 * 359.72057 * 22 21 20 24 24 N 1.32199 * 118.95515 * 180.25433 * 23 22 21 25 25 C 1.31829 * 120.94275 * 0.03536 * 24 23 22 26 26 N 1.31830 * 122.03777 * 359.96505 * 25 24 23 27 27 C 1.32189 * 120.94688 * 0.02562 * 26 25 24 28 28 C 1.39334 * 119.76171 * 0.27184 * 21 20 19 29 29 C 1.38020 * 119.87377 * 359.45312 * 28 21 20 30 30 H 1.09000 * 109.47279 * 300.00438 * 1 2 3 31 31 H 1.09000 * 109.46854 * 60.00367 * 1 2 3 32 32 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99765 * 85.00787 * 4 2 1 34 34 H 1.08998 * 109.47285 * 300.00427 * 8 5 4 35 35 H 1.09005 * 109.47021 * 60.00050 * 8 5 4 36 36 H 1.08998 * 109.47621 * 300.00641 * 9 8 5 37 37 H 1.09005 * 109.46678 * 60.00259 * 9 8 5 38 38 H 0.96997 * 119.99881 * 180.02562 * 13 12 10 39 39 H 1.08001 * 119.93783 * 359.95405 * 19 18 2 40 40 H 1.08000 * 120.06128 * 179.97438 * 20 19 18 41 41 H 1.08002 * 120.52305 * 0.24498 * 23 22 21 42 42 H 1.07995 * 118.97943 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.52607 * 180.02562 * 27 26 25 44 44 H 1.07997 * 120.06444 * 179.70516 * 28 21 20 45 45 H 1.08005 * 119.94301 * 180.25405 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 2.4121 0.1774 2.5505 6 8 2.8606 -0.8026 3.4767 7 8 3.2874 1.1909 2.0752 8 6 0.8407 0.8991 3.0984 9 6 1.0749 1.7343 4.3588 10 6 -0.2305 2.3344 4.8136 11 1 -1.1366 2.1393 4.2594 12 6 -0.2679 3.1326 5.9372 13 7 -1.4072 3.6559 6.3344 14 14 1.2996 3.4707 6.8954 15 1 1.9565 4.6883 6.3560 16 1 0.9687 3.6801 8.3278 17 1 2.2196 2.3124 6.7641 18 6 2.0324 -0.7104 -1.2304 19 6 2.4585 0.0223 -2.3235 20 6 2.9201 -0.6232 -3.4527 21 6 2.9559 -2.0155 -3.4905 22 6 3.4516 -2.7151 -4.7016 23 6 3.8827 -1.9968 -5.8196 24 7 4.3122 -2.6596 -6.8797 25 6 4.3361 -3.9777 -6.8912 26 7 3.9385 -4.6933 -5.8579 27 6 3.4946 -4.1104 -4.7577 28 6 2.5196 -2.7488 -2.3889 29 6 2.0653 -2.0929 -1.2627 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.1110 -1.6560 1.1950 34 1 0.4385 1.5353 2.3100 35 1 0.1315 0.1011 3.3184 36 1 1.4768 1.0978 5.1470 37 1 1.7842 2.5323 4.1391 38 1 -1.4335 4.2177 7.1247 39 1 2.4296 1.1015 -2.2933 40 1 3.2521 -0.0501 -4.3058 41 1 3.8653 -0.9169 -5.8178 42 1 4.6927 -4.4868 -7.7743 43 1 3.1708 -4.7034 -3.9151 44 1 2.5408 -3.8282 -2.4147 45 1 1.7308 -2.6601 -0.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074974940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:54 Heat of formation + Delta-G solvation = -30.231429 kcal Electronic energy + Delta-G solvation = -28527.652910 eV Core-core repulsion = 24443.044260 eV Total energy + Delta-G solvation = -4084.608650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06606 -40.46006 -38.20261 -37.37620 -37.00483 -35.87917 -34.82243 -34.12863 -33.46565 -32.02606 -31.18223 -29.51571 -27.85077 -25.97218 -25.86041 -23.83539 -23.38526 -22.94484 -21.70478 -20.34484 -19.42147 -19.04028 -18.58967 -18.34364 -17.82511 -17.32154 -17.02736 -16.42753 -16.33253 -16.04928 -15.84630 -15.44749 -15.25489 -14.94700 -14.83076 -14.64706 -14.58971 -14.52072 -14.08955 -13.90644 -13.72244 -13.48419 -13.23282 -13.21659 -13.13210 -13.03400 -12.88542 -12.57141 -12.21600 -12.15857 -11.95781 -11.92003 -11.91185 -11.71824 -11.68004 -11.36167 -11.12776 -10.82450 -10.48670 -10.26683 -9.89060 -9.18795 -8.34618 -6.39712 -0.73665 -0.61009 0.03546 0.47049 0.69901 1.32808 1.35335 1.44613 1.80992 2.30802 2.61471 2.77787 2.99571 2.99829 3.16943 3.19886 3.25771 3.41565 3.51980 3.67373 3.71464 3.90984 4.03655 4.04661 4.08407 4.23433 4.34768 4.37946 4.43863 4.54747 4.54998 4.58990 4.81812 4.85158 4.94227 5.05642 5.10581 5.13963 5.17094 5.30062 5.38220 5.43706 5.50003 5.51481 5.65497 5.88294 6.00318 6.10593 6.19093 6.66750 7.02731 7.24677 8.80665 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.029136 B = 0.001785 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.772869 B =15681.472506 C =15861.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.178 3.822 3 H 0.100 0.900 4 N -1.102 6.102 5 S 2.621 3.379 6 O -0.994 6.994 7 O -0.990 6.990 8 C -0.588 4.588 9 C -0.018 4.018 10 C -0.524 4.524 11 H 0.052 0.948 12 C 0.014 3.986 13 N -0.939 5.939 14 Si 0.922 3.078 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.250 1.250 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.105 4.105 21 C -0.055 4.055 22 C -0.144 4.144 23 C 0.147 3.853 24 N -0.535 5.535 25 C 0.278 3.722 26 N -0.535 5.535 27 C 0.148 3.852 28 C -0.106 4.106 29 C -0.114 4.114 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.424 0.576 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.269 0.731 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.191 0.809 42 H 0.219 0.781 43 H 0.190 0.810 44 H 0.148 0.852 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 -14.453 -25.729 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.071 3.929 3 H 0.118 0.882 4 N -0.864 5.864 5 S 2.717 3.283 6 O -0.984 6.984 7 O -0.980 6.980 8 C -0.720 4.720 9 C -0.057 4.057 10 C -0.563 4.563 11 H 0.071 0.929 12 C -0.185 4.185 13 N -0.579 5.579 14 Si 0.745 3.255 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.174 1.174 18 C -0.083 4.083 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.057 4.057 22 C -0.148 4.148 23 C -0.018 4.018 24 N -0.248 5.248 25 C -0.008 4.008 26 N -0.248 5.248 27 C -0.018 4.018 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.262 0.738 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.207 0.793 42 H 0.236 0.764 43 H 0.207 0.793 44 H 0.165 0.835 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.322 -14.579 -26.076 31.295 hybrid contribution -0.688 0.558 1.454 1.703 sum 8.634 -14.021 -24.622 29.620 Atomic orbital electron populations 1.22496 0.92868 1.04318 1.03886 1.19915 0.95062 0.96136 0.81767 0.88189 1.55477 1.84142 1.20130 1.26639 1.04455 0.77029 0.73770 0.73069 1.93523 1.80867 1.59953 1.64074 1.93521 1.62996 1.61545 1.79957 1.30405 1.21174 1.12056 1.08329 1.19381 0.97934 0.95612 0.92818 1.21179 0.94156 1.29795 1.11160 0.92947 1.25842 0.99205 0.95180 0.98225 1.70004 1.27440 1.34354 1.26142 0.86066 0.80564 0.80278 0.78570 1.18598 1.20160 1.17354 1.20032 0.98889 0.94477 0.94893 1.21222 0.98247 1.01182 0.92672 1.21392 0.98761 0.93243 0.98851 1.18528 1.01082 0.93456 0.92605 1.20606 1.02232 0.95775 0.96156 1.23804 0.88994 1.02191 0.86853 1.68480 1.16317 1.11256 1.28712 1.25546 0.91414 0.86895 0.96970 1.68474 1.12356 1.42277 1.01671 1.23797 0.90341 0.91827 0.95864 1.21394 0.97824 1.00985 0.92124 1.21085 0.99653 0.93659 0.98815 0.91594 0.89646 0.90415 0.73811 0.83780 0.83814 0.95113 0.95061 0.92222 0.83955 0.83457 0.79272 0.76435 0.79281 0.83467 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 9.46 71.98 0.68 -1.97 16 2 C 0.18 3.09 3.01 44.25 0.13 3.22 16 3 H 0.10 1.84 7.33 -2.38 -0.02 1.82 16 4 N -1.10 -22.19 5.31 -172.51 -0.92 -23.11 16 5 S 2.62 78.85 5.44 -56.49 -0.31 78.54 16 6 O -0.99 -35.86 18.08 -127.65 -2.31 -38.17 16 7 O -0.99 -35.36 17.39 -127.65 -2.22 -37.58 16 8 C -0.59 -19.25 5.16 71.98 0.37 -18.88 16 9 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 10 C -0.52 -28.61 9.66 25.60 0.25 -28.36 16 11 H 0.05 3.04 7.99 -2.91 -0.02 3.01 16 12 C 0.01 0.79 5.47 84.65 0.46 1.26 16 13 N -0.94 -56.74 13.96 21.45 0.30 -56.44 16 14 Si 0.92 43.07 27.47 68.60 1.88 44.95 16 15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 18 C -0.08 -1.24 4.96 -19.83 -0.10 -1.34 16 19 C -0.11 -1.58 9.65 22.24 0.21 -1.36 16 20 C -0.10 -1.23 9.45 22.48 0.21 -1.02 16 21 C -0.06 -0.69 5.88 -20.04 -0.12 -0.80 16 22 C -0.14 -1.82 5.91 -19.86 -0.12 -1.93 16 23 C 0.15 1.88 10.70 84.99 0.91 2.79 16 24 N -0.53 -8.26 10.42 -199.20 -2.08 -10.33 16 25 C 0.28 3.86 12.27 180.86 2.22 6.08 16 26 N -0.53 -8.25 10.42 -199.21 -2.08 -10.32 16 27 C 0.15 1.88 10.70 84.99 0.91 2.79 16 28 C -0.11 -1.21 9.45 22.48 0.21 -1.00 16 29 C -0.11 -1.48 9.14 22.24 0.20 -1.28 16 30 H 0.07 1.12 5.78 -2.39 -0.01 1.11 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.42 6.70 7.03 -96.75 -0.68 6.02 16 34 H 0.14 4.14 6.77 -2.39 -0.02 4.12 16 35 H 0.14 4.21 8.14 -2.39 -0.02 4.19 16 36 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 37 H 0.03 1.37 7.57 -2.38 -0.02 1.36 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 39 H 0.14 1.58 8.03 -2.91 -0.02 1.56 16 40 H 0.15 1.02 6.30 -2.91 -0.02 1.00 16 41 H 0.19 1.40 6.35 -2.91 -0.02 1.39 16 42 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.19 1.39 6.35 -2.91 -0.02 1.37 16 44 H 0.15 0.96 6.30 -2.91 -0.02 0.94 16 45 H 0.14 1.37 6.81 -2.91 -0.02 1.35 16 Total: -1.00 -78.75 384.77 -0.85 -79.59 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.31 Total: 15.37 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 6.56 Total: -42.50 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.77 Total: -100.21 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -4.53 Total: -75.75 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 16 Polarization: 78.85 SS G_CDS: -0.31 Total: 78.54 kcal Total: -78.75 -0.85 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074974940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.362 kcal (2) G-P(sol) polarization free energy of solvation -78.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds