Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00374 * 2 1 4 4 H 1.48502 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46893 * 300.00224 * 3 2 1 6 6 H 1.48504 * 109.46882 * 59.99777 * 3 2 1 7 7 C 1.37883 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99585 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46629 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00115 * 90.00624 * 10 9 7 12 12 C 1.50695 * 109.47506 * 89.99477 * 11 10 9 13 13 C 1.38231 * 119.62006 * 95.02112 * 12 11 10 14 14 C 1.38624 * 119.16245 * 179.74795 * 13 12 11 15 15 C 1.38670 * 118.41844 * 0.47286 * 14 13 12 16 16 C 1.38183 * 119.16614 * 359.50979 * 15 14 13 17 17 N 1.31850 * 119.61678 * 275.00389 * 12 11 10 18 18 C 1.34779 * 119.99706 * 269.99843 * 10 9 7 19 19 O 1.21590 * 119.99861 * 180.02562 * 18 10 9 20 20 N 1.34769 * 120.00421 * 0.02562 * 18 10 9 21 21 C 1.39635 * 120.00394 * 175.49823 * 20 18 10 22 22 C 1.37815 * 120.29373 * 34.77989 * 21 20 18 23 23 C 1.39161 * 120.75091 * 179.97438 * 22 21 20 24 24 C 1.36170 * 121.08530 * 0.05022 * 23 22 21 25 25 C 1.40516 * 119.94633 * 359.97438 * 24 23 22 26 26 C 1.40571 * 121.20129 * 179.97438 * 25 24 23 27 27 C 1.36107 * 119.65829 * 179.97438 * 26 25 24 28 28 C 1.39346 * 120.97758 * 0.02562 * 27 26 25 29 29 C 1.36153 * 120.96326 * 359.97438 * 28 27 26 30 30 C 1.40375 * 119.66750 * 359.72711 * 29 28 27 31 31 H 0.97005 * 120.00268 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46790 * 60.00195 * 9 7 2 33 33 H 1.09000 * 109.47323 * 299.99644 * 9 7 2 34 34 H 1.08998 * 109.46682 * 329.99095 * 11 10 9 35 35 H 1.08997 * 109.47033 * 209.99776 * 11 10 9 36 36 H 1.07998 * 120.41645 * 359.95405 * 13 12 11 37 37 H 1.07997 * 120.78768 * 180.23356 * 14 13 12 38 38 H 1.08003 * 120.41744 * 179.77990 * 15 14 13 39 39 H 1.08003 * 119.61834 * 180.25214 * 16 15 14 40 40 H 0.97003 * 120.00303 * 355.49925 * 20 18 10 41 41 H 1.08003 * 119.62647 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.45721 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.02485 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.17260 * 359.97438 * 26 25 24 45 45 H 1.08000 * 119.50789 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.51888 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.16713 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.6789 -4.1684 1.2719 12 6 1.7622 -5.2821 1.7079 13 6 2.0791 -6.5904 1.3936 14 6 1.2318 -7.6080 1.8040 15 6 0.0871 -7.2693 2.5097 16 6 -0.1639 -5.9392 2.7874 17 7 0.6672 -4.9975 2.3851 18 6 2.6408 -4.1259 -1.1641 19 8 3.4306 -5.0504 -1.1633 20 7 2.2033 -3.6145 -2.3317 21 6 2.7270 -4.0821 -3.5387 22 6 3.0813 -5.4068 -3.6760 23 6 3.6036 -5.8831 -4.8747 24 6 3.7800 -5.0567 -5.9425 25 6 3.4318 -3.6989 -5.8436 26 6 3.6033 -2.8223 -6.9290 27 6 3.2549 -1.5130 -6.7988 28 6 2.7301 -1.0259 -5.6034 29 6 2.5503 -1.8461 -4.5316 30 6 2.8923 -3.2039 -4.6307 31 1 -0.4851 0.8401 -0.0004 32 1 0.6239 -2.5574 -0.8880 33 1 0.6246 -2.5563 0.8920 34 1 2.6867 -3.3860 2.0308 35 1 3.6883 -4.5585 1.1419 36 1 2.9772 -6.8172 0.8383 37 1 1.4559 -8.6395 1.5760 38 1 -0.5973 -8.0359 2.8419 39 1 -1.0511 -5.6676 3.3402 40 1 1.5245 -2.9215 -2.3337 41 1 2.9521 -6.0830 -2.8438 42 1 3.8738 -6.9254 -4.9594 43 1 4.1871 -5.4445 -6.8646 44 1 4.0093 -3.1857 -7.8614 45 1 3.3881 -0.8415 -7.6341 46 1 2.4621 0.0174 -5.5259 47 1 2.1421 -1.4550 -3.6114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075105196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = 62.745350 kcal Electronic energy + Delta-G solvation = -31745.080397 eV Core-core repulsion = 27664.892665 eV Total energy + Delta-G solvation = -4080.187731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.67064 -39.98760 -39.13017 -36.37901 -35.18588 -34.61428 -32.84826 -32.21361 -31.71458 -30.87033 -30.05401 -28.33377 -27.63119 -25.97983 -23.43696 -23.26123 -22.97136 -22.81991 -22.20521 -21.13176 -19.35293 -18.02975 -17.47152 -16.88374 -16.61614 -16.37551 -15.97764 -15.79631 -15.65987 -15.29189 -14.89620 -14.61539 -14.40408 -13.87808 -13.75278 -13.62692 -13.38710 -13.22210 -13.06871 -12.91530 -12.77029 -12.51961 -12.42483 -11.94612 -11.66950 -11.58157 -11.31865 -11.20286 -10.99118 -10.90964 -10.81724 -10.72023 -10.29817 -10.18491 -9.83460 -9.66904 -9.45610 -9.17781 -8.94038 -8.81981 -8.60707 -8.37798 -7.89392 -7.16794 -6.22236 -4.30552 0.78481 1.25396 1.27877 1.49902 2.25710 3.18338 3.19177 3.24607 3.28730 3.34313 3.73527 4.05409 4.28051 4.38775 4.55958 4.67482 4.86888 4.96057 5.02503 5.04005 5.09569 5.11040 5.24358 5.24872 5.35107 5.36919 5.55809 5.61063 5.67304 5.76882 5.78385 5.94627 5.99781 6.13576 6.18815 6.21665 6.33019 6.36114 6.38095 6.52474 6.62655 6.64194 6.75977 6.78360 6.89040 6.91231 7.08211 7.12446 7.28512 7.39353 7.67519 7.72985 7.99285 8.28371 8.44925 8.78688 9.11374 9.38187 10.84040 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007140 B = 0.004238 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3920.677138 B = 6605.701237 C = 9941.236241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.599 5.599 11 C 0.186 3.814 12 C 0.118 3.882 13 C -0.150 4.150 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.094 3.906 17 N -0.463 5.463 18 C 0.710 3.290 19 O -0.600 6.600 20 N -0.677 5.677 21 C 0.194 3.806 22 C -0.140 4.140 23 C -0.087 4.087 24 C -0.145 4.145 25 C -0.032 4.032 26 C -0.118 4.118 27 C -0.112 4.112 28 C -0.128 4.128 29 C -0.091 4.091 30 C -0.071 4.071 31 H 0.265 0.735 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.418 0.582 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 -10.785 -6.099 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.332 5.332 11 C 0.061 3.939 12 C -0.022 4.022 13 C -0.170 4.170 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.064 4.064 17 N -0.173 5.173 18 C 0.412 3.588 19 O -0.481 6.481 20 N -0.324 5.324 21 C 0.097 3.903 22 C -0.161 4.161 23 C -0.106 4.106 24 C -0.164 4.164 25 C -0.032 4.032 26 C -0.136 4.136 27 C -0.130 4.130 28 C -0.147 4.147 29 C -0.109 4.109 30 C -0.073 4.073 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.258 0.742 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.697 -10.354 -5.764 12.153 hybrid contribution 0.074 0.526 -0.116 0.544 sum 2.772 -9.828 -5.880 11.783 Atomic orbital electron populations 1.69935 1.05970 1.27269 1.49389 1.24927 0.94804 0.99230 0.94659 0.86493 0.80226 0.83305 0.77810 1.19627 1.20813 1.20786 1.21537 0.93700 0.90298 1.52365 0.91893 1.19441 0.87413 0.82439 0.98812 1.47338 1.47678 1.35782 1.02372 1.20044 0.94651 0.93363 0.85877 1.21928 0.93052 0.94155 0.93024 1.22139 1.01421 0.93367 1.00113 1.21547 0.93936 0.99624 0.95923 1.22091 0.98620 0.98087 1.01289 1.22764 0.97942 0.88854 0.96809 1.67598 1.02853 1.37349 1.09468 1.15771 0.80519 0.81836 0.80639 1.90788 1.39305 1.31543 1.86445 1.42755 1.43347 1.43392 1.02910 1.17514 0.96356 0.91930 0.84526 1.21227 1.02359 0.94128 0.98425 1.20677 0.97878 0.99534 0.92500 1.20818 1.03824 0.92559 0.99208 1.17849 0.98469 0.94024 0.92868 1.20919 1.01339 0.93550 0.97770 1.20818 0.98962 0.95657 0.97613 1.20798 1.00657 1.00055 0.93156 1.21123 0.98120 0.92314 0.99333 1.17914 1.02280 0.93490 0.93637 0.92507 0.95722 0.92946 0.88320 0.89069 0.84326 0.85306 0.85330 0.83072 0.74197 0.84027 0.86192 0.86118 0.85890 0.86369 0.86051 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 13.28 55.43 0.74 -23.19 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -13.66 9.39 -34.44 -0.32 -13.98 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.58 4.97 -5.19 -0.03 5.55 16 10 N -0.60 -12.41 2.44 -182.19 -0.44 -12.86 16 11 C 0.19 3.43 5.71 -5.20 -0.03 3.40 16 12 C 0.12 2.04 6.36 -82.59 -0.53 1.52 16 13 C -0.15 -2.28 9.72 -39.44 -0.38 -2.66 16 14 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 15 C -0.18 -2.20 10.11 -39.44 -0.40 -2.60 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.22 10.27 -9.47 -0.10 -8.32 16 18 C 0.71 14.68 8.12 -86.92 -0.71 13.97 16 19 O -0.60 -12.67 13.29 5.29 0.07 -12.60 16 20 N -0.68 -13.14 4.87 -14.00 -0.07 -13.20 16 21 C 0.19 3.52 6.32 -83.38 -0.53 2.99 16 22 C -0.14 -2.36 8.68 -39.39 -0.34 -2.70 16 23 C -0.09 -1.22 9.94 -39.98 -0.40 -1.61 16 24 C -0.15 -1.93 9.75 -39.47 -0.38 -2.31 16 25 C -0.03 -0.47 5.74 -106.85 -0.61 -1.08 16 26 C -0.12 -1.50 9.77 -39.47 -0.39 -1.88 16 27 C -0.11 -1.41 9.95 -39.94 -0.40 -1.81 16 28 C -0.13 -1.84 9.95 -39.92 -0.40 -2.24 16 29 C -0.09 -1.51 9.46 -39.53 -0.37 -1.88 16 30 C -0.07 -1.21 5.75 -106.70 -0.61 -1.82 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.03 0.60 6.30 -51.93 -0.33 0.27 16 33 H 0.05 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 35 H 0.09 1.59 7.32 -51.93 -0.38 1.21 16 36 H 0.14 2.07 8.01 -52.49 -0.42 1.65 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.42 8.22 5.33 -40.82 -0.22 8.01 16 41 H 0.14 2.54 6.16 -52.48 -0.32 2.21 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.13 2.34 6.90 -52.49 -0.36 1.98 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -29.69 398.26 -12.14 -41.82 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -5.80 Total: 14.93 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -7.52 Total: -7.84 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.13 Total: -57.57 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.69 -12.14 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.567 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds