Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86803 * 120.00374 * 2 1 4 4 H 1.48502 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46893 * 300.00224 * 3 2 1 6 6 H 1.48504 * 109.46882 * 59.99777 * 3 2 1 7 7 C 1.37883 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99585 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46629 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00115 * 90.00624 * 10 9 7 12 12 C 1.50695 * 109.47506 * 89.99477 * 11 10 9 13 13 C 1.38231 * 119.62006 * 95.02112 * 12 11 10 14 14 C 1.38624 * 119.16245 * 179.74795 * 13 12 11 15 15 C 1.38670 * 118.41844 * 0.47286 * 14 13 12 16 16 C 1.38183 * 119.16614 * 359.50979 * 15 14 13 17 17 N 1.31850 * 119.61678 * 275.00389 * 12 11 10 18 18 C 1.34779 * 119.99706 * 269.99843 * 10 9 7 19 19 O 1.21590 * 119.99861 * 180.02562 * 18 10 9 20 20 N 1.34769 * 120.00421 * 0.02562 * 18 10 9 21 21 C 1.39635 * 120.00394 * 175.49823 * 20 18 10 22 22 C 1.37815 * 120.29373 * 34.77989 * 21 20 18 23 23 C 1.39161 * 120.75091 * 179.97438 * 22 21 20 24 24 C 1.36170 * 121.08530 * 0.05022 * 23 22 21 25 25 C 1.40516 * 119.94633 * 359.97438 * 24 23 22 26 26 C 1.40571 * 121.20129 * 179.97438 * 25 24 23 27 27 C 1.36107 * 119.65829 * 179.97438 * 26 25 24 28 28 C 1.39346 * 120.97758 * 0.02562 * 27 26 25 29 29 C 1.36153 * 120.96326 * 359.97438 * 28 27 26 30 30 C 1.40375 * 119.66750 * 359.72711 * 29 28 27 31 31 H 0.97005 * 120.00268 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46790 * 60.00195 * 9 7 2 33 33 H 1.09000 * 109.47323 * 299.99644 * 9 7 2 34 34 H 1.08998 * 109.46682 * 329.99095 * 11 10 9 35 35 H 1.08997 * 109.47033 * 209.99776 * 11 10 9 36 36 H 1.07998 * 120.41645 * 359.95405 * 13 12 11 37 37 H 1.07997 * 120.78768 * 180.23356 * 14 13 12 38 38 H 1.08003 * 120.41744 * 179.77990 * 15 14 13 39 39 H 1.08003 * 119.61834 * 180.25214 * 16 15 14 40 40 H 0.97003 * 120.00303 * 355.49925 * 20 18 10 41 41 H 1.08003 * 119.62647 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.45721 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.02485 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.17260 * 359.97438 * 26 25 24 45 45 H 1.08000 * 119.50789 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.51888 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.16713 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.6789 -4.1684 1.2719 12 6 1.7622 -5.2821 1.7079 13 6 2.0791 -6.5904 1.3936 14 6 1.2318 -7.6080 1.8040 15 6 0.0871 -7.2693 2.5097 16 6 -0.1639 -5.9392 2.7874 17 7 0.6672 -4.9975 2.3851 18 6 2.6408 -4.1259 -1.1641 19 8 3.4306 -5.0504 -1.1633 20 7 2.2033 -3.6145 -2.3317 21 6 2.7270 -4.0821 -3.5387 22 6 3.0813 -5.4068 -3.6760 23 6 3.6036 -5.8831 -4.8747 24 6 3.7800 -5.0567 -5.9425 25 6 3.4318 -3.6989 -5.8436 26 6 3.6033 -2.8223 -6.9290 27 6 3.2549 -1.5130 -6.7988 28 6 2.7301 -1.0259 -5.6034 29 6 2.5503 -1.8461 -4.5316 30 6 2.8923 -3.2039 -4.6307 31 1 -0.4851 0.8401 -0.0004 32 1 0.6239 -2.5574 -0.8880 33 1 0.6246 -2.5563 0.8920 34 1 2.6867 -3.3860 2.0308 35 1 3.6883 -4.5585 1.1419 36 1 2.9772 -6.8172 0.8383 37 1 1.4559 -8.6395 1.5760 38 1 -0.5973 -8.0359 2.8419 39 1 -1.0511 -5.6676 3.3402 40 1 1.5245 -2.9215 -2.3337 41 1 2.9521 -6.0830 -2.8438 42 1 3.8738 -6.9254 -4.9594 43 1 4.1871 -5.4445 -6.8646 44 1 4.0093 -3.1857 -7.8614 45 1 3.3881 -0.8415 -7.6341 46 1 2.4621 0.0174 -5.5259 47 1 2.1421 -1.4550 -3.6114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075105196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = 48.882167 kcal Electronic energy + Delta-G solvation = -31745.681549 eV Core-core repulsion = 27664.892665 eV Total energy + Delta-G solvation = -4080.788884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.04221 -41.17255 -40.46853 -37.64383 -36.74803 -35.99827 -34.72274 -33.40418 -33.00086 -32.10959 -31.18532 -29.53405 -29.45682 -27.44957 -25.10365 -24.41973 -24.32721 -24.00429 -23.42773 -22.36960 -20.82552 -19.46806 -18.89989 -18.55168 -17.93739 -17.70976 -17.27020 -16.99285 -16.93492 -16.63056 -16.44280 -16.17437 -15.73226 -15.23379 -15.08521 -14.78221 -14.63049 -14.46313 -14.33399 -14.24223 -14.19460 -13.95935 -13.63845 -13.56365 -13.12874 -12.97456 -12.81308 -12.64334 -12.58566 -12.40535 -12.16892 -12.00700 -11.87544 -11.77056 -11.48224 -11.03246 -10.80230 -10.65534 -10.40180 -10.22907 -9.98170 -9.55100 -9.52189 -8.42308 -8.23521 -6.39962 -0.36204 0.10914 0.12753 0.39873 1.08023 1.35983 1.39232 1.49874 1.71845 2.01838 2.26731 2.36420 2.79710 3.05181 3.10024 3.21980 3.40425 3.79566 3.81564 3.92850 3.99129 4.02629 4.17161 4.17907 4.26318 4.38089 4.38942 4.46293 4.53134 4.58441 4.59843 4.74193 4.76439 4.79608 4.88224 4.98615 5.07278 5.12269 5.21388 5.25186 5.27466 5.38062 5.44958 5.52285 5.60149 5.63211 5.67717 5.74898 5.82326 5.97777 6.00114 6.05677 6.17089 6.62293 6.88384 7.12412 7.31436 7.50506 8.81313 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007140 B = 0.004238 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3920.677138 B = 6605.701237 C = 9941.236241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.262 3.738 10 N -0.602 5.602 11 C 0.186 3.814 12 C 0.093 3.907 13 C -0.158 4.158 14 C -0.079 4.079 15 C -0.163 4.163 16 C 0.078 3.922 17 N -0.504 5.504 18 C 0.705 3.295 19 O -0.608 6.608 20 N -0.678 5.678 21 C 0.152 3.848 22 C -0.143 4.143 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.052 4.052 26 C -0.104 4.104 27 C -0.116 4.116 28 C -0.122 4.122 29 C -0.128 4.128 30 C -0.085 4.085 31 H 0.269 0.731 32 H 0.012 0.988 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.411 0.589 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.133 0.867 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -12.252 -8.731 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.069 0.931 9 C 0.141 3.859 10 N -0.335 5.335 11 C 0.062 3.938 12 C -0.045 4.045 13 C -0.179 4.179 14 C -0.105 4.105 15 C -0.183 4.183 16 C -0.079 4.079 17 N -0.214 5.214 18 C 0.408 3.592 19 O -0.490 6.490 20 N -0.324 5.324 21 C 0.057 3.943 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.052 4.052 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.140 4.140 29 C -0.146 4.146 30 C -0.087 4.087 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.153 0.847 37 H 0.183 0.817 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.250 0.750 41 H 0.142 0.858 42 H 0.169 0.831 43 H 0.182 0.818 44 H 0.182 0.818 45 H 0.173 0.827 46 H 0.151 0.849 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.524 -11.840 -8.413 14.946 hybrid contribution -0.197 0.907 0.619 1.116 sum 3.327 -10.934 -7.794 13.833 Atomic orbital electron populations 1.70025 1.07173 1.28170 1.50112 1.25609 0.95507 1.02143 0.94188 0.85553 0.78719 0.79606 0.78094 1.19884 1.19859 1.20293 1.21632 0.93101 0.91420 1.52248 0.93140 1.18940 0.87285 0.82874 0.96795 1.47282 1.47402 1.35417 1.03430 1.20045 0.95499 0.93671 0.84576 1.21637 0.93518 0.94443 0.94915 1.22161 1.02058 0.93204 1.00448 1.21982 0.93206 1.00626 0.94686 1.22521 0.98560 0.97961 0.99250 1.23277 0.98085 0.89659 0.96902 1.67492 1.03740 1.39462 1.10750 1.15874 0.80565 0.81929 0.80841 1.90754 1.39764 1.31871 1.86629 1.42710 1.43269 1.43127 1.03333 1.17829 0.98941 0.93034 0.84540 1.21279 1.02502 0.93341 0.99346 1.20973 0.97832 1.01331 0.91475 1.21293 1.01172 0.91459 1.00239 1.18265 0.98721 0.95521 0.92705 1.21392 0.99454 0.93087 0.98252 1.21205 0.98001 0.96501 0.97616 1.21094 0.99345 1.00358 0.93252 1.21011 1.00941 0.93138 0.99519 1.18092 1.02883 0.93407 0.94342 0.92230 0.96986 0.95514 0.89789 0.88664 0.84688 0.81656 0.81063 0.80920 0.75042 0.85840 0.83080 0.81828 0.81776 0.82681 0.84900 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 13.28 21.45 0.28 -51.08 16 2 C 0.03 1.42 5.46 84.66 0.46 1.88 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -29.35 9.39 25.60 0.24 -29.11 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 9 C 0.26 13.30 4.97 85.63 0.43 13.72 16 10 N -0.60 -27.17 2.44 -848.58 -2.07 -29.24 16 11 C 0.19 7.52 5.71 85.63 0.49 8.01 16 12 C 0.09 3.42 6.36 42.55 0.27 3.70 16 13 C -0.16 -4.90 9.72 22.36 0.22 -4.69 16 14 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 15 C -0.16 -3.59 10.11 22.36 0.23 -3.37 16 16 C 0.08 2.21 11.18 84.67 0.95 3.16 16 17 N -0.50 -18.78 10.27 -183.88 -1.89 -20.67 16 18 C 0.71 31.51 8.12 179.06 1.45 32.97 16 19 O -0.61 -27.33 13.29 -4.00 -0.05 -27.38 16 20 N -0.68 -28.73 4.87 -316.47 -1.54 -30.27 16 21 C 0.15 5.85 6.32 38.50 0.24 6.09 16 22 C -0.14 -4.97 8.68 22.39 0.19 -4.77 16 23 C -0.10 -2.55 9.94 22.01 0.22 -2.34 16 24 C -0.12 -2.86 9.75 22.34 0.22 -2.64 16 25 C -0.05 -1.43 5.74 -21.31 -0.12 -1.55 16 26 C -0.10 -2.23 9.77 22.34 0.22 -2.01 16 27 C -0.12 -2.53 9.95 22.04 0.22 -2.31 16 28 C -0.12 -3.44 9.95 22.05 0.22 -3.22 16 29 C -0.13 -4.47 9.46 22.30 0.21 -4.26 16 30 C -0.09 -2.98 5.75 -21.21 -0.12 -3.10 16 31 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 32 H 0.01 0.65 6.30 -2.39 -0.02 0.63 16 33 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 34 H 0.08 3.51 8.07 -2.39 -0.02 3.49 16 35 H 0.10 3.64 7.32 -2.39 -0.02 3.62 16 36 H 0.14 4.19 8.01 -2.91 -0.02 4.16 16 37 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.41 18.06 5.33 -92.71 -0.49 17.56 16 41 H 0.12 4.66 6.16 -2.91 -0.02 4.64 16 42 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 43 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 46 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 47 H 0.10 4.12 6.90 -2.91 -0.02 4.10 16 Total: -1.00 -69.60 398.26 3.73 -65.87 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: 0.51 Total: 43.39 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.46 Total: 4.51 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.21 Total: -131.25 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.60 3.73 -65.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.753 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds