Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99681 * 2 1 4 4 H 1.48501 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47619 * 299.99853 * 3 2 1 6 6 H 1.48504 * 109.47390 * 60.00370 * 3 2 1 7 7 C 1.37876 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00025 * 270.00037 * 10 9 7 12 12 O 1.21583 * 120.00292 * 187.92236 * 11 10 9 13 13 N 1.34783 * 119.99634 * 7.92303 * 11 10 9 14 14 C 1.39973 * 119.99585 * 184.55248 * 13 11 10 15 15 C 1.39016 * 119.99249 * 320.56061 * 14 13 11 16 16 C 1.38228 * 120.25868 * 179.76473 * 15 14 13 17 17 C 1.37986 * 120.23629 * 0.51536 * 16 15 14 18 18 C 1.39749 * 119.97380 * 359.74037 * 17 16 15 19 19 C 1.43207 * 120.12751 * 179.97438 * 18 17 16 20 20 C 9.13588 * 85.55368 * 239.98602 * 2 1 3 21 21 C 9.87088 * 88.47295 * 245.95606 * 7 1 2 22 22 C 1.39748 * 119.76158 * 266.16767 * 21 20 19 23 23 C 1.38291 * 119.03418 * 179.79874 * 22 21 20 24 24 C 1.38859 * 118.54435 * 0.47021 * 23 22 21 25 25 C 1.38286 * 119.43966 * 359.75564 * 24 23 22 26 26 N 1.31716 * 120.93392 * 0.02562 * 25 24 23 27 27 C 1.38546 * 119.98789 * 140.83752 * 14 13 11 28 28 C 1.46500 * 120.00103 * 89.99598 * 10 9 7 29 29 C 1.53001 * 117.50030 * 194.56426 * 28 10 9 30 30 C 1.52997 * 117.49535 * 125.90646 * 28 10 9 31 31 H 0.96999 * 120.00260 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47071 * 59.99965 * 9 7 2 33 33 H 1.09001 * 109.47299 * 300.00540 * 9 7 2 34 34 H 0.96995 * 120.00379 * 4.56079 * 13 11 10 35 35 H 1.08000 * 119.87054 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.88356 * 180.25831 * 16 15 14 37 37 H 1.08002 * 120.01170 * 179.72174 * 17 16 15 38 38 H 1.07996 * 120.47909 * 0.02562 * 22 21 20 39 39 H 1.07994 * 120.72575 * 180.22402 * 23 22 21 40 40 H 1.08000 * 120.27807 * 179.72702 * 24 23 22 41 41 H 1.08007 * 119.53565 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.11549 * 359.95661 * 27 14 13 43 43 H 1.09001 * 115.54981 * 340.24301 * 28 10 9 44 44 H 1.09001 * 117.49319 * 0.02562 * 29 28 10 45 45 H 1.08997 * 117.49618 * 145.02273 * 29 28 10 46 46 H 1.08999 * 117.49589 * 214.98346 * 30 28 10 47 47 H 1.09001 * 117.50373 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6411 -4.1249 -1.1677 12 8 3.3152 -5.1367 -1.1728 13 7 2.3317 -3.5154 -2.3294 14 6 2.7046 -4.0978 -3.5463 15 6 3.9432 -4.7168 -3.6697 16 6 4.3152 -5.2981 -4.8674 17 6 3.4640 -5.2588 -5.9527 18 6 2.2187 -4.6345 -5.8412 19 6 1.3329 -4.5914 -6.9656 20 6 0.6069 -4.5561 -7.8870 21 6 -0.2788 -4.5094 -9.0132 22 6 -1.6613 -4.5177 -8.8093 23 6 -2.5018 -4.4679 -9.9064 24 6 -1.9365 -4.4214 -11.1738 25 6 -0.5598 -4.4209 -11.3044 26 7 0.2209 -4.4644 -10.2445 27 6 1.8416 -4.0523 -4.6291 28 6 2.6792 -4.1694 1.2682 29 6 3.9074 -5.0807 1.2232 30 6 2.5211 -5.6761 1.4820 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8896 34 1 1.8507 -2.6731 -2.3221 35 1 4.6158 -4.7474 -2.8252 36 1 5.2772 -5.7810 -4.9553 37 1 3.7601 -5.7102 -6.8881 38 1 -2.0673 -4.5586 -7.8095 39 1 -3.5743 -4.4693 -9.7802 40 1 -2.5667 -4.3864 -12.0502 41 1 -0.1184 -4.3844 -12.2895 42 1 0.8804 -3.5684 -4.5361 43 1 2.5638 -3.5228 2.1381 44 1 4.3613 -5.2657 0.2496 45 1 4.5998 -5.0339 2.0637 46 1 2.3022 -6.0207 2.4926 47 1 2.0625 -6.2531 0.6789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076069985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = 129.742251 kcal Electronic energy + Delta-G solvation = -29663.159612 eV Core-core repulsion = 25585.877084 eV Total energy + Delta-G solvation = -4077.282528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.41857 -40.35286 -38.87003 -36.36151 -34.80012 -34.42672 -33.45508 -32.81788 -32.24734 -31.78120 -29.84369 -28.93139 -27.14258 -24.67786 -23.78690 -23.44490 -22.86641 -22.73404 -21.82954 -21.51544 -19.72351 -18.74829 -17.55061 -16.96266 -16.69337 -16.55294 -16.26666 -16.12684 -15.60876 -15.10935 -14.86118 -14.58952 -14.54335 -14.46932 -14.17452 -13.97710 -13.55252 -13.45115 -13.22192 -12.95774 -12.58343 -12.30803 -12.25704 -11.85611 -11.72848 -11.54259 -11.31660 -11.22772 -11.02609 -10.88194 -10.72608 -10.62242 -10.31443 -10.25608 -9.86673 -9.78557 -9.74752 -9.66128 -9.31890 -9.06287 -8.67681 -8.39936 -7.92599 -7.51519 -6.28832 -4.38566 0.28619 0.90321 1.18955 1.46978 2.41226 2.84228 3.15758 3.18130 3.25375 3.30275 3.52188 3.60915 3.76422 4.14247 4.22258 4.36272 4.44966 4.49731 4.58210 4.68832 4.78066 4.80805 5.02925 5.04018 5.20280 5.27922 5.39494 5.42433 5.48508 5.53122 5.59537 5.64008 5.70311 5.77486 5.82042 6.05575 6.13751 6.22940 6.30876 6.41712 6.46627 6.55506 6.57409 6.66357 6.74809 6.89836 7.05100 7.28638 7.31380 7.34112 7.58631 7.65927 7.70495 7.91223 8.44953 8.73740 9.14086 9.31820 10.76790 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.002208 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.630043 B =12679.996615 C =14578.739816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.238 3.762 10 N -0.581 5.581 11 C 0.710 3.290 12 O -0.596 6.596 13 N -0.685 5.685 14 C 0.182 3.818 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.111 4.111 18 C 0.014 3.986 19 C -0.054 4.054 20 C -0.139 4.139 21 C 0.241 3.759 22 C -0.146 4.146 23 C -0.072 4.072 24 C -0.172 4.172 25 C 0.104 3.896 26 N -0.472 5.472 27 C -0.119 4.119 28 C 0.104 3.896 29 C -0.199 4.199 30 C -0.195 4.195 31 H 0.266 0.734 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.422 0.578 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.161 0.839 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 -9.170 -15.505 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.118 3.882 10 N -0.312 5.312 11 C 0.413 3.587 12 O -0.478 6.478 13 N -0.334 5.334 14 C 0.085 3.915 15 C -0.120 4.120 16 C -0.123 4.123 17 C -0.130 4.130 18 C 0.013 3.987 19 C -0.057 4.057 20 C -0.140 4.140 21 C 0.106 3.894 22 C -0.166 4.166 23 C -0.098 4.098 24 C -0.192 4.192 25 C -0.054 4.054 26 N -0.181 5.181 27 C -0.140 4.140 28 C -0.002 4.002 29 C -0.236 4.236 30 C -0.234 4.234 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.178 0.822 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.607 -9.687 -15.517 18.302 hybrid contribution -1.000 1.562 0.205 1.866 sum -1.607 -8.125 -15.312 17.408 Atomic orbital electron populations 1.69929 1.06031 1.27443 1.49258 1.24967 0.94859 0.99435 0.94491 0.86440 0.80185 0.83063 0.77829 1.19592 1.20760 1.20779 1.21587 0.93815 0.90331 1.52609 0.91750 1.19418 0.87302 0.82620 0.98821 1.46817 1.46138 1.36202 1.02056 1.15855 0.79877 0.82435 0.80488 1.90665 1.44726 1.26520 1.85857 1.42973 1.61311 1.26429 1.02713 1.17375 0.92541 0.96382 0.85155 1.21482 0.94844 0.97596 0.98103 1.20925 0.99660 0.99583 0.92165 1.21106 0.92817 0.99899 0.99192 1.15579 0.92548 1.01672 0.88890 1.19054 0.95163 0.97208 0.94238 1.18147 0.97860 1.03601 0.94391 1.16494 0.88724 0.96385 0.87760 1.22159 0.92889 1.00665 1.00887 1.21568 1.00695 0.95467 0.92082 1.22278 0.96721 1.01723 0.98495 1.22770 0.90424 0.95003 0.97228 1.67807 1.40570 1.11611 0.98100 1.21016 0.99310 1.01913 0.91776 1.21378 1.01135 0.90391 0.87269 1.23829 0.91342 1.03429 1.05039 1.23231 1.01228 0.97356 1.01583 0.92411 0.94848 0.93963 0.73792 0.84094 0.85312 0.85712 0.84058 0.84165 0.84400 0.82187 0.85130 0.85460 0.84536 0.90167 0.89508 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 13.29 55.43 0.74 -22.82 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.51 9.15 -34.44 -0.32 -13.82 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.43 4.83 -5.19 -0.03 5.40 16 10 N -0.58 -11.96 2.82 -173.17 -0.49 -12.45 16 11 C 0.71 14.39 7.89 -86.91 -0.69 13.70 16 12 O -0.60 -12.30 9.86 5.29 0.05 -12.25 16 13 N -0.68 -12.77 5.11 -14.26 -0.07 -12.84 16 14 C 0.18 3.06 6.21 -83.74 -0.52 2.54 16 15 C -0.10 -1.57 8.67 -39.30 -0.34 -1.91 16 16 C -0.10 -1.37 10.02 -39.68 -0.40 -1.76 16 17 C -0.11 -1.45 9.76 -39.11 -0.38 -1.83 16 18 C 0.01 0.20 5.73 -106.88 -0.61 -0.41 16 19 C -0.05 -0.78 13.24 -38.84 -0.51 -1.30 16 20 C -0.14 -1.97 13.46 -38.78 -0.52 -2.49 16 21 C 0.24 3.03 6.60 -84.83 -0.56 2.47 16 22 C -0.15 -1.42 9.81 -39.00 -0.38 -1.80 16 23 C -0.07 -0.53 10.16 -39.33 -0.40 -0.93 16 24 C -0.17 -1.16 10.11 -39.33 -0.40 -1.56 16 25 C 0.10 0.89 11.17 -17.58 -0.20 0.70 16 26 N -0.47 -5.83 10.29 -11.03 -0.11 -5.94 16 27 C -0.12 -1.82 9.68 -38.94 -0.38 -2.20 16 28 C 0.10 1.92 6.60 -67.93 -0.45 1.47 16 29 C -0.20 -3.38 9.62 -26.69 -0.26 -3.64 16 30 C -0.19 -3.23 9.90 -26.70 -0.26 -3.49 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.03 0.78 6.80 -51.93 -0.35 0.43 16 33 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.42 8.07 6.69 -40.82 -0.27 7.80 16 35 H 0.14 2.38 6.55 -52.49 -0.34 2.03 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.13 2.25 8.14 -51.93 -0.42 1.83 16 44 H 0.14 2.61 5.16 -52.28 -0.27 2.34 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.67 7.68 -51.93 -0.40 1.27 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -29.28 408.18 -12.28 -41.56 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.83 Total: 12.89 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -7.69 Total: -9.28 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.06 Total: -54.05 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.05 Total: -12.25 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.28 -12.28 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076069985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.306 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds