Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99681 * 2 1 4 4 H 1.48501 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47619 * 299.99853 * 3 2 1 6 6 H 1.48504 * 109.47390 * 60.00370 * 3 2 1 7 7 C 1.37876 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99967 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00025 * 270.00037 * 10 9 7 12 12 O 1.21583 * 120.00292 * 187.92236 * 11 10 9 13 13 N 1.34783 * 119.99634 * 7.92303 * 11 10 9 14 14 C 1.39973 * 119.99585 * 184.55248 * 13 11 10 15 15 C 1.39016 * 119.99249 * 320.56061 * 14 13 11 16 16 C 1.38228 * 120.25868 * 179.76473 * 15 14 13 17 17 C 1.37986 * 120.23629 * 0.51536 * 16 15 14 18 18 C 1.39749 * 119.97380 * 359.74037 * 17 16 15 19 19 C 1.43207 * 120.12751 * 179.97438 * 18 17 16 20 20 C 9.13588 * 85.55368 * 239.98602 * 2 1 3 21 21 C 9.87088 * 88.47295 * 245.95606 * 7 1 2 22 22 C 1.39748 * 119.76158 * 266.16767 * 21 20 19 23 23 C 1.38291 * 119.03418 * 179.79874 * 22 21 20 24 24 C 1.38859 * 118.54435 * 0.47021 * 23 22 21 25 25 C 1.38286 * 119.43966 * 359.75564 * 24 23 22 26 26 N 1.31716 * 120.93392 * 0.02562 * 25 24 23 27 27 C 1.38546 * 119.98789 * 140.83752 * 14 13 11 28 28 C 1.46500 * 120.00103 * 89.99598 * 10 9 7 29 29 C 1.53001 * 117.50030 * 194.56426 * 28 10 9 30 30 C 1.52997 * 117.49535 * 125.90646 * 28 10 9 31 31 H 0.96999 * 120.00260 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47071 * 59.99965 * 9 7 2 33 33 H 1.09001 * 109.47299 * 300.00540 * 9 7 2 34 34 H 0.96995 * 120.00379 * 4.56079 * 13 11 10 35 35 H 1.08000 * 119.87054 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.88356 * 180.25831 * 16 15 14 37 37 H 1.08002 * 120.01170 * 179.72174 * 17 16 15 38 38 H 1.07996 * 120.47909 * 0.02562 * 22 21 20 39 39 H 1.07994 * 120.72575 * 180.22402 * 23 22 21 40 40 H 1.08000 * 120.27807 * 179.72702 * 24 23 22 41 41 H 1.08007 * 119.53565 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.11549 * 359.95661 * 27 14 13 43 43 H 1.09001 * 115.54981 * 340.24301 * 28 10 9 44 44 H 1.09001 * 117.49319 * 0.02562 * 29 28 10 45 45 H 1.08997 * 117.49618 * 145.02273 * 29 28 10 46 46 H 1.08999 * 117.49589 * 214.98346 * 30 28 10 47 47 H 1.09001 * 117.50373 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6411 -4.1249 -1.1677 12 8 3.3152 -5.1367 -1.1728 13 7 2.3317 -3.5154 -2.3294 14 6 2.7046 -4.0978 -3.5463 15 6 3.9432 -4.7168 -3.6697 16 6 4.3152 -5.2981 -4.8674 17 6 3.4640 -5.2588 -5.9527 18 6 2.2187 -4.6345 -5.8412 19 6 1.3329 -4.5914 -6.9656 20 6 0.6069 -4.5561 -7.8870 21 6 -0.2788 -4.5094 -9.0132 22 6 -1.6613 -4.5177 -8.8093 23 6 -2.5018 -4.4679 -9.9064 24 6 -1.9365 -4.4214 -11.1738 25 6 -0.5598 -4.4209 -11.3044 26 7 0.2209 -4.4644 -10.2445 27 6 1.8416 -4.0523 -4.6291 28 6 2.6792 -4.1694 1.2682 29 6 3.9074 -5.0807 1.2232 30 6 2.5211 -5.6761 1.4820 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8896 34 1 1.8507 -2.6731 -2.3221 35 1 4.6158 -4.7474 -2.8252 36 1 5.2772 -5.7810 -4.9553 37 1 3.7601 -5.7102 -6.8881 38 1 -2.0673 -4.5586 -7.8095 39 1 -3.5743 -4.4693 -9.7802 40 1 -2.5667 -4.3864 -12.0502 41 1 -0.1184 -4.3844 -12.2895 42 1 0.8804 -3.5684 -4.5361 43 1 2.5638 -3.5228 2.1381 44 1 4.3613 -5.2657 0.2496 45 1 4.5998 -5.0339 2.0637 46 1 2.3022 -6.0207 2.4926 47 1 2.0625 -6.2531 0.6789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076069985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = 116.973288 kcal Electronic energy + Delta-G solvation = -29663.713316 eV Core-core repulsion = 25585.877084 eV Total energy + Delta-G solvation = -4077.836231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88127 -41.05643 -40.14180 -37.75152 -36.41962 -35.60316 -34.89652 -33.96839 -33.50714 -32.71688 -30.92587 -30.13629 -28.98740 -25.57347 -25.04994 -24.46672 -24.42930 -23.82618 -23.19137 -22.77879 -21.10396 -19.80891 -18.80339 -18.63055 -18.28757 -17.46799 -17.32377 -17.05173 -16.81593 -16.44550 -16.35754 -16.17494 -15.76031 -15.46286 -15.25536 -14.99435 -14.69498 -14.60222 -14.40843 -14.19807 -14.07883 -13.85849 -13.55013 -13.06097 -12.93473 -12.84484 -12.79526 -12.67532 -12.43432 -12.36630 -12.20427 -12.11707 -11.77035 -11.45562 -11.19180 -11.10670 -10.93224 -10.71985 -10.57078 -10.55842 -10.15688 -9.52801 -9.29826 -8.98320 -8.23607 -6.40436 -0.58375 0.14530 0.27896 0.29695 1.36745 1.38266 1.42550 1.52143 1.69889 1.87775 2.10556 2.37204 2.63076 2.79183 2.93074 3.05468 3.07893 3.17206 3.64991 3.89221 3.95134 3.99206 4.00814 4.10313 4.14395 4.15860 4.17340 4.25303 4.27761 4.44620 4.54011 4.61737 4.74101 4.76071 4.86715 4.89641 4.96317 5.08043 5.11608 5.14135 5.18631 5.25890 5.33282 5.42793 5.44178 5.58491 5.65624 5.68136 5.83144 5.97671 6.01385 6.11658 6.22942 6.64514 6.87032 6.94073 7.32667 7.58269 8.80425 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.002208 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.630043 B =12679.996615 C =14578.739816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.254 3.746 10 N -0.587 5.587 11 C 0.704 3.296 12 O -0.603 6.603 13 N -0.685 5.685 14 C 0.157 3.843 15 C -0.113 4.113 16 C -0.092 4.092 17 C -0.104 4.104 18 C 0.013 3.987 19 C -0.087 4.087 20 C -0.132 4.132 21 C 0.196 3.804 22 C -0.151 4.151 23 C -0.071 4.071 24 C -0.153 4.153 25 C 0.092 3.908 26 N -0.506 5.506 27 C -0.126 4.126 28 C 0.076 3.924 29 C -0.189 4.189 30 C -0.177 4.177 31 H 0.269 0.731 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.416 0.584 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.188 0.812 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -9.632 -17.425 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.133 3.867 10 N -0.318 5.318 11 C 0.407 3.593 12 O -0.485 6.485 13 N -0.334 5.334 14 C 0.062 3.938 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.122 4.122 18 C 0.013 3.987 19 C -0.090 4.090 20 C -0.132 4.132 21 C 0.063 3.937 22 C -0.171 4.171 23 C -0.096 4.096 24 C -0.172 4.172 25 C -0.067 4.067 26 N -0.215 5.215 27 C -0.146 4.146 28 C -0.029 4.029 29 C -0.227 4.227 30 C -0.216 4.216 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.255 0.745 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.192 0.808 40 H 0.196 0.804 41 H 0.205 0.795 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.134 0.866 45 H 0.126 0.874 46 H 0.136 0.864 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.891 -10.174 -17.442 20.212 hybrid contribution -0.999 1.638 0.577 2.004 sum -1.891 -8.535 -16.866 18.997 Atomic orbital electron populations 1.70010 1.07156 1.28249 1.50147 1.25626 0.95521 1.02225 0.94235 0.85526 0.78822 0.79581 0.77855 1.19700 1.20425 1.20345 1.21683 0.93289 0.91332 1.52175 0.92822 1.19043 0.87282 0.82884 0.97450 1.46784 1.46067 1.35878 1.03114 1.15981 0.79982 0.82549 0.80741 1.90661 1.45020 1.26741 1.86054 1.42947 1.61173 1.26170 1.03132 1.17584 0.93592 0.97828 0.84800 1.21482 0.94370 0.98593 0.98918 1.21227 1.00770 0.98245 0.90764 1.21423 0.91920 0.98752 1.00126 1.15711 0.93226 1.01359 0.88447 1.19153 0.95946 0.99127 0.94771 1.18813 0.97487 1.02284 0.94650 1.16668 0.89637 0.99746 0.87656 1.22335 0.92098 1.00398 1.02295 1.22025 1.02107 0.94022 0.91479 1.22753 0.96313 0.98491 0.99681 1.23369 0.91530 0.94462 0.97325 1.67724 1.42297 1.12780 0.98726 1.21020 0.99273 1.02396 0.91952 1.21646 1.02995 0.91627 0.86623 1.23777 0.91564 1.02311 1.05029 1.23221 1.00469 0.95351 1.02573 0.92209 0.95839 0.95544 0.74509 0.85473 0.81982 0.83200 0.83571 0.80795 0.80392 0.79478 0.85236 0.84979 0.86623 0.87414 0.86406 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.36 13.29 21.45 0.28 -49.08 16 2 C 0.02 1.28 5.46 84.65 0.46 1.74 16 3 Si 0.96 41.33 29.54 68.60 2.03 43.36 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -27.74 9.15 25.60 0.23 -27.51 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 9 C 0.25 12.05 4.83 85.63 0.41 12.46 16 10 N -0.59 -24.99 2.82 -820.04 -2.31 -27.31 16 11 C 0.70 29.72 7.89 179.05 1.41 31.13 16 12 O -0.60 -25.67 9.86 -3.98 -0.04 -25.71 16 13 N -0.69 -27.01 5.11 -317.28 -1.62 -28.63 16 14 C 0.16 5.53 6.21 38.10 0.24 5.77 16 15 C -0.11 -3.65 8.67 22.45 0.19 -3.45 16 16 C -0.09 -2.31 10.02 22.21 0.22 -2.09 16 17 C -0.10 -2.61 9.76 22.58 0.22 -2.39 16 18 C 0.01 0.39 5.73 -21.33 -0.12 0.27 16 19 C -0.09 -2.63 13.24 30.02 0.40 -2.23 16 20 C -0.13 -3.86 13.46 30.06 0.40 -3.46 16 21 C 0.20 4.99 6.60 40.63 0.27 5.26 16 22 C -0.15 -2.83 9.81 22.65 0.22 -2.61 16 23 C -0.07 -0.83 10.16 22.43 0.23 -0.60 16 24 C -0.15 -1.52 10.11 22.43 0.23 -1.29 16 25 C 0.09 1.38 11.17 84.72 0.95 2.32 16 26 N -0.51 -12.27 10.29 -188.80 -1.94 -14.21 16 27 C -0.13 -4.05 9.68 22.68 0.22 -3.83 16 28 C 0.08 2.82 6.60 44.99 0.30 3.12 16 29 C -0.19 -6.32 9.62 30.62 0.29 -6.02 16 30 C -0.18 -5.74 9.90 30.62 0.30 -5.43 16 31 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.02 1.16 6.80 -2.38 -0.02 1.14 16 33 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 34 H 0.42 16.98 6.69 -92.71 -0.62 16.36 16 35 H 0.13 4.44 6.55 -2.91 -0.02 4.42 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 43 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 44 H 0.12 4.45 5.16 -8.00 -0.04 4.41 16 45 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.07 2.67 7.68 -2.39 -0.02 2.65 16 Total: -1.00 -65.81 408.18 3.85 -61.96 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.37 Total: 38.45 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 7.08 Total: 1.16 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -5.59 Total: -119.22 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -65.81 3.85 -61.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076069985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.936 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds