Wall clock time and date at job start Tue Mar 31 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.50693 * 109.47070 * 180.02562 * 16 14 12 18 18 C 1.38238 * 120.00459 * 269.72698 * 17 16 14 19 19 C 1.38231 * 120.00381 * 179.76351 * 18 17 16 20 20 C 1.38241 * 119.99670 * 0.49676 * 19 18 17 21 21 S 1.76198 * 119.99786 * 179.76435 * 20 19 18 22 22 O 1.42099 * 104.27817 * 26.08914 * 21 20 19 23 23 O 1.42103 * 104.27620 * 153.94561 * 21 20 19 24 24 C 1.81396 * 104.45086 * 270.01706 * 21 20 19 25 25 F 1.39898 * 109.47148 * 300.00266 * 24 21 20 26 26 F 1.39904 * 109.47085 * 59.99921 * 24 21 20 27 27 C 1.38232 * 119.99977 * 359.77751 * 20 19 18 28 28 C 1.38233 * 120.00314 * 359.96843 * 27 20 19 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 37 37 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 38 38 H 1.08007 * 119.99302 * 0.02562 * 18 17 16 39 39 H 1.07995 * 120.00308 * 180.24817 * 19 18 17 40 40 H 1.08994 * 109.47496 * 180.02562 * 24 21 20 41 41 H 1.08000 * 120.00071 * 179.97438 * 27 20 19 42 42 H 1.08000 * 120.00153 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1335 0.2013 -4.1336 18 6 3.5414 0.9772 -5.1125 19 6 4.3088 1.8496 -5.8614 20 6 5.6702 1.9386 -5.6382 21 16 6.6495 3.0460 -6.5969 22 8 5.7393 4.0605 -6.9988 23 8 7.7588 3.3462 -5.7611 24 6 7.1775 2.0619 -8.0264 25 9 7.9165 0.9588 -7.5857 26 9 6.0517 1.6185 -8.7287 27 6 6.2632 1.1585 -4.6632 28 6 5.4949 0.2900 -3.9108 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 3.9016 -1.6021 -3.0168 37 1 2.4483 -1.0887 -3.9070 38 1 2.4783 0.9048 -5.2894 39 1 3.8456 2.4587 -6.6234 40 1 7.7963 2.6753 -8.6812 41 1 7.3269 1.2277 -4.4891 42 1 5.9583 -0.3198 -3.1493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076992126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:45 Heat of formation + Delta-G solvation = -180.372033 kcal Electronic energy + Delta-G solvation = -29974.116693 eV Core-core repulsion = 25296.475176 eV Total energy + Delta-G solvation = -4677.641516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.36892 -48.53177 -41.14222 -39.89957 -38.61133 -37.49174 -37.12918 -34.89313 -34.07503 -32.08824 -31.50897 -28.89504 -28.63535 -27.49342 -27.29719 -24.03633 -23.95454 -22.44886 -20.82121 -19.94344 -19.61077 -19.31305 -18.79944 -18.52860 -18.27716 -17.91095 -17.21727 -17.13275 -16.51055 -16.43010 -15.88820 -15.74522 -15.67755 -15.37771 -15.33084 -14.78894 -14.76061 -14.55608 -14.30549 -13.97858 -13.92139 -13.86085 -13.60886 -13.56160 -13.48126 -13.29558 -13.08008 -12.97836 -12.79451 -12.68494 -12.63072 -12.21574 -12.16466 -12.12651 -12.08495 -11.61330 -11.19363 -10.80164 -10.51983 -10.14555 -10.03935 -9.31458 -8.15233 -6.31846 -1.74212 -0.29931 0.31204 1.20635 1.40565 1.42544 1.52039 1.81190 2.06837 2.32337 2.38759 2.45475 2.71301 2.78893 3.06841 3.13021 3.28290 3.56089 3.70725 3.89493 3.90436 4.19642 4.29176 4.46027 4.52721 4.56619 4.73496 4.76983 4.79552 4.89633 4.94209 4.98960 5.06287 5.06902 5.12385 5.43996 5.48011 5.60004 5.67255 5.81146 6.04080 6.16528 6.76988 6.84546 7.32304 7.49178 8.89101 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.002150 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.418443 B =13017.299415 C =13281.670337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.288 1.288 12 N -0.601 5.601 13 C 0.076 3.924 14 C 0.496 3.504 15 O -0.602 6.602 16 C -0.100 4.100 17 C -0.010 4.010 18 C -0.139 4.139 19 C -0.024 4.024 20 C -0.676 4.676 21 S 2.496 3.504 22 O -0.915 6.915 23 O -0.916 6.916 24 C -0.193 4.193 25 F -0.170 7.170 26 F -0.169 7.169 27 C -0.025 4.025 28 C -0.141 4.141 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.209 0.791 41 H 0.158 0.842 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 -4.631 -24.430 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.214 1.214 12 N -0.331 5.331 13 C -0.066 4.066 14 C 0.285 3.715 15 O -0.484 6.484 16 C -0.139 4.139 17 C -0.011 4.011 18 C -0.158 4.158 19 C -0.043 4.043 20 C -0.765 4.765 21 S 2.670 3.330 22 O -0.912 6.912 23 O -0.914 6.914 24 C -0.331 4.331 25 F -0.151 7.151 26 F -0.151 7.151 27 C -0.044 4.044 28 C -0.160 4.160 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.178 0.822 40 H 0.226 0.774 41 H 0.176 0.824 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.753 -3.160 -24.062 26.544 hybrid contribution -0.226 -0.893 1.191 1.506 sum 10.527 -4.053 -22.871 25.501 Atomic orbital electron populations 1.21864 0.97235 1.00112 0.99812 1.18494 0.91537 0.92141 0.81893 0.97663 1.21598 1.31810 1.13050 0.91095 0.91830 1.25762 0.95133 0.95625 1.02136 1.70034 1.37461 1.23944 1.24377 0.85456 0.78923 0.78215 0.78425 1.19207 1.19369 1.21423 1.48245 1.49028 1.13556 1.22274 1.21922 1.01625 0.80292 1.02779 1.21143 0.78450 0.86754 0.85157 1.90673 1.59871 1.19744 1.78088 1.20918 1.01956 0.98146 0.92863 1.20006 0.94130 0.94177 0.92751 1.21423 1.01262 0.96608 0.96488 1.21159 0.91509 0.94309 0.97323 1.30128 1.08209 1.21509 1.16688 1.06299 0.74956 0.75589 0.76186 1.93625 1.62735 1.52234 1.82654 1.93628 1.53617 1.81880 1.62232 1.32911 0.89678 0.96168 1.14316 1.93094 1.76720 1.55430 1.89863 1.93094 1.50758 1.90815 1.80384 1.21133 1.01234 0.90756 0.91235 1.21415 0.93808 1.00491 1.00304 0.93336 0.91664 0.96195 0.92718 0.91400 0.88522 0.91470 0.84866 0.84457 0.83380 0.82225 0.77444 0.82446 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.97 71.98 0.65 -5.64 16 2 C 0.26 13.44 2.64 44.24 0.12 13.55 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -28.77 7.99 25.60 0.20 -28.57 16 5 H 0.06 3.27 7.33 -2.91 -0.02 3.24 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.24 11.32 21.45 0.24 -52.99 16 8 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 N -0.60 -23.98 2.75 -826.80 -2.28 -26.25 16 13 C 0.08 2.12 9.24 127.77 1.18 3.30 16 14 C 0.50 19.11 7.67 87.66 0.67 19.78 16 15 O -0.60 -29.95 15.36 -3.03 -0.05 -30.00 16 16 C -0.10 -2.39 4.38 29.10 0.13 -2.26 16 17 C -0.01 -0.26 4.37 -19.87 -0.09 -0.35 16 18 C -0.14 -3.38 9.70 22.27 0.22 -3.16 16 19 C -0.02 -0.55 9.47 22.27 0.21 -0.34 16 20 C -0.68 -15.15 5.65 22.27 0.13 -15.03 16 21 S 2.50 42.82 5.39 -56.49 -0.30 42.52 16 22 O -0.92 -19.82 17.13 -127.65 -2.19 -22.00 16 23 O -0.92 -20.16 17.13 -127.65 -2.19 -22.35 16 24 C -0.19 -1.96 5.94 113.37 0.67 -1.29 16 25 F -0.17 -2.34 17.37 44.97 0.78 -1.56 16 26 F -0.17 -2.29 17.37 44.97 0.78 -1.50 16 27 C -0.02 -0.58 9.47 22.27 0.21 -0.37 16 28 C -0.14 -3.58 9.70 22.27 0.22 -3.36 16 29 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 30 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 31 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.86 6.44 -2.38 -0.02 1.85 16 35 H 0.07 2.10 7.02 -2.39 -0.02 2.08 16 36 H 0.13 2.41 7.35 -2.39 -0.02 2.39 16 37 H 0.14 2.33 8.05 -2.39 -0.02 2.31 16 38 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.16 2.87 7.57 -2.91 -0.02 2.85 16 40 H 0.21 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.16 3.01 7.57 -2.91 -0.02 2.98 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -82.52 375.99 2.85 -79.66 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.06 Total: 12.28 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.96 Total: -22.58 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.03 Total: -79.25 kcal Atomic # 8 Polarization: -69.93 SS G_CDS: -4.42 Total: -74.35 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 1.56 Total: -3.06 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 42.82 SS G_CDS: -0.30 Total: 42.52 kcal Total: -82.52 2.85 -79.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076992126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.711 kcal (2) G-P(sol) polarization free energy of solvation -82.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds