Wall clock time and date at job start Tue Mar 31 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46783 * 179.97438 * 16 14 12 18 18 C 1.38239 * 120.00184 * 269.72338 * 17 16 14 19 19 C 1.38231 * 120.00046 * 179.76707 * 18 17 16 20 20 C 1.38235 * 119.99722 * 0.49006 * 19 18 17 21 21 S 1.76201 * 119.99945 * 179.76615 * 20 19 18 22 22 O 1.42105 * 104.27779 * 26.08971 * 21 20 19 23 23 O 1.42103 * 104.27952 * 153.95024 * 21 20 19 24 24 C 1.81406 * 104.44929 * 270.02261 * 21 20 19 25 25 F 1.39893 * 109.47204 * 299.99791 * 24 21 20 26 26 F 1.39897 * 109.47214 * 59.99870 * 24 21 20 27 27 C 1.38232 * 120.00334 * 359.78873 * 20 19 18 28 28 C 1.38228 * 120.00027 * 90.00389 * 17 16 14 29 29 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 30 30 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 31 31 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 32 32 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 33 33 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 34 34 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 35 35 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 36 36 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 37 37 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 38 38 H 1.08002 * 119.99785 * 0.02562 * 18 17 16 39 39 H 1.08004 * 120.00063 * 180.25274 * 19 18 17 40 40 H 1.09000 * 109.46865 * 179.97438 * 24 21 20 41 41 H 1.08004 * 120.00283 * 179.97438 * 27 20 19 42 42 H 1.08008 * 120.00022 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1328 0.2013 4.1340 18 6 5.4952 0.2851 3.9156 19 6 6.2629 1.1573 4.6644 20 6 5.6697 1.9384 5.6385 21 16 6.6492 3.0457 6.5973 22 8 7.7590 3.3450 5.7618 23 8 5.7393 4.0609 6.9985 24 6 7.1762 2.0618 8.0273 25 9 6.0500 1.6192 8.7293 26 9 7.9149 0.9582 7.5873 27 6 4.3083 1.8504 5.8610 28 6 3.5398 0.9819 5.1085 29 1 -0.3634 0.5908 -0.8408 30 1 -0.3634 -1.0236 -0.0913 31 1 -0.3634 0.4327 0.9321 32 1 2.6357 -1.6779 -3.4731 33 1 2.4157 -2.7377 0.9716 34 1 1.6238 -2.2852 2.5001 35 1 0.6905 -2.3002 0.9847 36 1 2.4471 -1.0880 3.9073 37 1 3.9004 -1.6025 3.0178 38 1 5.9592 -0.3279 3.1570 39 1 7.3267 1.2258 4.4909 40 1 7.7951 2.6752 8.6821 41 1 3.8449 2.4603 6.6224 42 1 2.4759 0.9135 5.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076992127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:50 Heat of formation + Delta-G solvation = -154.108238 kcal Electronic energy + Delta-G solvation = -30068.879320 eV Core-core repulsion = 25392.376688 eV Total energy + Delta-G solvation = -4676.502633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -49.78201 -47.93923 -40.04563 -38.80322 -37.84048 -36.71674 -35.62810 -33.40685 -32.70704 -31.25692 -30.47067 -28.16666 -27.86202 -26.34194 -24.78781 -23.11548 -22.89864 -20.86975 -20.10565 -18.94488 -18.69303 -18.43609 -18.20936 -17.61346 -17.58712 -16.63892 -16.40628 -15.80517 -15.52043 -15.14851 -14.99277 -14.76286 -14.71983 -14.57988 -14.19736 -13.81306 -13.72783 -13.37073 -13.28750 -13.02537 -12.89757 -12.80096 -12.76582 -12.69283 -12.42821 -12.07307 -12.02642 -11.74869 -11.57975 -11.41760 -11.35341 -11.25396 -10.93931 -10.58537 -10.09717 -9.76459 -9.57710 -9.18983 -9.09717 -8.92857 -8.54317 -7.88960 -6.50861 -4.20621 -1.05677 0.55658 1.16866 1.91816 2.80281 3.03788 3.11558 3.20645 3.32147 3.33637 3.45244 3.51781 3.57059 3.80197 3.93009 4.41154 4.48423 4.51275 4.67881 4.97058 5.02560 5.11692 5.23113 5.31484 5.36518 5.48896 5.60251 5.76245 5.82767 5.85497 5.95244 6.10982 6.23168 6.28933 6.31089 6.46530 6.63494 6.82266 7.07297 7.31563 7.76652 8.17808 8.28452 8.67401 8.85297 9.49907 10.86831 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002269 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.257505 B =12338.994917 C =12720.757703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.228 3.772 3 H 0.063 0.937 4 C -0.603 4.603 5 H 0.061 0.939 6 C 0.033 3.967 7 N -0.908 5.908 8 Si 1.049 2.951 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.116 4.116 17 C 0.012 3.988 18 C -0.125 4.125 19 C -0.011 4.011 20 C -0.662 4.662 21 S 2.477 3.523 22 O -0.889 6.889 23 O -0.890 6.890 24 C -0.212 4.212 25 F -0.165 7.165 26 F -0.164 7.164 27 C -0.012 4.012 28 C -0.127 4.127 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.267 0.733 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.116 1.064 25.733 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.080 0.920 4 C -0.641 4.641 5 H 0.079 0.921 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.878 3.122 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.318 5.318 13 C -0.058 4.058 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.156 4.156 17 C 0.011 3.989 18 C -0.144 4.144 19 C -0.030 4.030 20 C -0.754 4.754 21 S 2.648 3.352 22 O -0.887 6.887 23 O -0.888 6.888 24 C -0.346 4.346 25 F -0.146 7.146 26 F -0.146 7.146 27 C -0.031 4.031 28 C -0.146 4.146 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.909 3.535 24.416 25.620 hybrid contribution 0.365 -2.392 1.233 2.716 sum 7.274 1.143 25.650 26.686 Atomic orbital electron populations 1.22410 0.98976 1.01122 0.99206 1.19416 0.90161 0.95314 0.82523 0.91959 1.22237 1.40257 1.10610 0.91020 0.92126 1.25700 0.96418 1.03370 0.91754 1.70830 1.36385 1.16778 1.30200 0.83946 0.76205 0.75787 0.76249 1.20913 1.20035 1.21348 1.47961 1.49063 1.11763 1.22975 1.21601 1.01886 0.82839 0.99455 1.20104 0.79461 0.87129 0.84008 1.90698 1.57880 1.16947 1.76715 1.20938 1.00541 0.98408 0.95669 1.19823 0.93773 0.93223 0.92060 1.21160 0.93481 0.99851 0.99924 1.20862 1.00372 0.90626 0.91114 1.29714 1.07637 1.21743 1.16269 1.06897 0.76103 0.76115 0.76065 1.93663 1.53288 1.81231 1.60469 1.93657 1.62086 1.50845 1.82165 1.33127 0.89402 0.96468 1.15641 1.93088 1.50108 1.90782 1.80629 1.93094 1.76714 1.54967 1.89791 1.20841 0.91209 0.94200 0.96855 1.21110 1.00310 0.96678 0.96503 0.92787 0.92810 0.95036 0.92261 0.93014 0.92633 0.90751 0.87716 0.87636 0.84669 0.83889 0.83015 0.83947 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.65 37.16 0.32 -2.99 16 2 C 0.23 5.37 2.21 -69.09 -0.15 5.22 16 3 H 0.06 1.65 5.40 -51.93 -0.28 1.37 16 4 C -0.60 -16.35 8.77 -34.44 -0.30 -16.66 16 5 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 6 C 0.03 0.93 5.43 -17.82 -0.10 0.83 16 7 N -0.91 -27.40 13.70 55.43 0.76 -26.64 16 8 Si 1.05 25.50 25.28 -169.99 -4.30 21.20 16 9 H -0.28 -6.38 6.82 56.52 0.39 -6.00 16 10 H -0.27 -6.50 6.35 56.52 0.36 -6.14 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.59 -11.47 2.75 -175.27 -0.48 -11.95 16 13 C 0.09 1.29 9.43 59.85 0.56 1.86 16 14 C 0.51 9.45 7.67 -10.98 -0.08 9.36 16 15 O -0.54 -12.47 15.36 5.56 0.09 -12.38 16 16 C -0.12 -1.45 4.38 -29.03 -0.13 -1.58 16 17 C 0.01 0.16 4.37 -104.62 -0.46 -0.30 16 18 C -0.13 -1.57 9.70 -39.58 -0.38 -1.95 16 19 C -0.01 -0.12 9.47 -39.59 -0.37 -0.50 16 20 C -0.66 -7.32 5.65 -39.58 -0.22 -7.55 16 21 S 2.48 21.82 5.39 -107.50 -0.58 21.24 16 22 O -0.89 -9.83 17.13 -57.54 -0.99 -10.81 16 23 O -0.89 -9.65 17.13 -57.54 -0.99 -10.63 16 24 C -0.21 -1.34 5.94 101.05 0.60 -0.74 16 25 F -0.16 -1.30 17.37 2.25 0.04 -1.26 16 26 F -0.16 -1.32 17.37 2.25 0.04 -1.28 16 27 C -0.01 -0.13 9.47 -39.58 -0.37 -0.51 16 28 C -0.13 -1.51 9.70 -39.59 -0.38 -1.90 16 29 H 0.05 1.15 4.41 -51.93 -0.23 0.93 16 30 H 0.05 1.05 6.88 -51.93 -0.36 0.70 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.27 8.00 8.72 -40.82 -0.36 7.65 16 33 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16 35 H 0.07 1.14 6.53 -51.93 -0.34 0.80 16 36 H 0.10 1.01 7.35 -51.93 -0.38 0.62 16 37 H 0.11 1.12 8.05 -51.93 -0.42 0.71 16 38 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.14 1.35 7.57 -52.48 -0.40 0.95 16 40 H 0.15 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.14 1.26 7.57 -52.48 -0.40 0.86 16 42 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -37.35 369.76 -7.17 -44.52 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.86 Total: -0.17 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.48 Total: -17.40 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.28 Total: -38.60 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.89 Total: -33.83 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.30 Total: 21.20 kcal Atomic # 16 Polarization: 21.82 SS G_CDS: -0.58 Total: 21.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.35 -7.17 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076992127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.588 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds