Wall clock time and date at job start Tue Mar 31 2020 05:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46783 * 179.97438 * 16 14 12 18 18 C 1.38239 * 120.00184 * 269.72338 * 17 16 14 19 19 C 1.38231 * 120.00046 * 179.76707 * 18 17 16 20 20 C 1.38235 * 119.99722 * 0.49006 * 19 18 17 21 21 S 1.76201 * 119.99945 * 179.76615 * 20 19 18 22 22 O 1.42105 * 104.27779 * 26.08971 * 21 20 19 23 23 O 1.42103 * 104.27952 * 153.95024 * 21 20 19 24 24 C 1.81406 * 104.44929 * 270.02261 * 21 20 19 25 25 F 1.39893 * 109.47204 * 299.99791 * 24 21 20 26 26 F 1.39897 * 109.47214 * 59.99870 * 24 21 20 27 27 C 1.38232 * 120.00334 * 359.78873 * 20 19 18 28 28 C 1.38228 * 120.00027 * 90.00389 * 17 16 14 29 29 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 30 30 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 31 31 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 32 32 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 33 33 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 34 34 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 35 35 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 36 36 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 37 37 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 38 38 H 1.08002 * 119.99785 * 0.02562 * 18 17 16 39 39 H 1.08004 * 120.00063 * 180.25274 * 19 18 17 40 40 H 1.09000 * 109.46865 * 179.97438 * 24 21 20 41 41 H 1.08004 * 120.00283 * 179.97438 * 27 20 19 42 42 H 1.08008 * 120.00022 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1328 0.2013 4.1340 18 6 5.4952 0.2851 3.9156 19 6 6.2629 1.1573 4.6644 20 6 5.6697 1.9384 5.6385 21 16 6.6492 3.0457 6.5973 22 8 7.7590 3.3450 5.7618 23 8 5.7393 4.0609 6.9985 24 6 7.1762 2.0618 8.0273 25 9 6.0500 1.6192 8.7293 26 9 7.9149 0.9582 7.5873 27 6 4.3083 1.8504 5.8610 28 6 3.5398 0.9819 5.1085 29 1 -0.3634 0.5908 -0.8408 30 1 -0.3634 -1.0236 -0.0913 31 1 -0.3634 0.4327 0.9321 32 1 2.6357 -1.6779 -3.4731 33 1 2.4157 -2.7377 0.9716 34 1 1.6238 -2.2852 2.5001 35 1 0.6905 -2.3002 0.9847 36 1 2.4471 -1.0880 3.9073 37 1 3.9004 -1.6025 3.0178 38 1 5.9592 -0.3279 3.1570 39 1 7.3267 1.2258 4.4909 40 1 7.7951 2.6752 8.6821 41 1 3.8449 2.4603 6.6224 42 1 2.4759 0.9135 5.2820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076992127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:50 Heat of formation + Delta-G solvation = -181.605435 kcal Electronic energy + Delta-G solvation = -30070.071688 eV Core-core repulsion = 25392.376688 eV Total energy + Delta-G solvation = -4677.695001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.099 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37921 -48.54230 -41.23310 -39.97365 -38.61885 -37.50125 -37.27639 -34.96174 -34.16958 -32.17317 -32.10942 -29.00286 -28.66062 -27.68631 -26.76669 -24.04694 -23.97665 -22.35332 -20.82795 -20.02904 -19.62947 -19.58465 -19.32187 -18.80860 -18.29723 -18.10958 -17.26706 -17.09973 -16.60161 -16.34516 -15.91512 -15.72621 -15.58056 -15.38783 -15.34102 -14.81291 -14.79500 -14.70756 -14.57016 -14.32275 -13.99633 -13.92460 -13.73045 -13.61651 -13.49108 -13.45325 -13.31462 -13.26462 -13.02106 -12.86178 -12.41267 -12.18658 -12.12246 -11.89513 -11.68743 -11.62531 -11.03641 -10.85317 -10.69503 -10.20131 -10.06013 -9.53950 -8.72047 -6.45403 -1.75126 -0.32348 0.29059 1.19575 1.36628 1.49840 1.65031 1.70697 2.03452 2.29401 2.38019 2.39045 2.63796 2.78183 3.03939 3.05840 3.27309 3.51302 3.68134 3.80044 3.87768 4.15588 4.26369 4.36899 4.47008 4.49432 4.50483 4.60545 4.66080 4.70659 4.75366 4.92064 4.94329 4.97008 5.05592 5.10943 5.36454 5.41041 5.65971 5.77098 5.79265 5.98931 6.51673 6.69550 7.25231 7.37535 8.61115 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002269 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.257505 B =12338.994917 C =12720.757703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.227 3.773 3 H 0.031 0.969 4 C -0.595 4.595 5 H 0.033 0.967 6 C -0.017 4.017 7 N -0.941 5.941 8 Si 1.082 2.918 9 H -0.250 1.250 10 H -0.270 1.270 11 H -0.291 1.291 12 N -0.597 5.597 13 C 0.082 3.918 14 C 0.499 3.501 15 O -0.595 6.595 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.143 4.143 19 C -0.025 4.025 20 C -0.675 4.675 21 S 2.497 3.503 22 O -0.917 6.917 23 O -0.913 6.913 24 C -0.193 4.193 25 F -0.169 7.169 26 F -0.170 7.170 27 C -0.023 4.023 28 C -0.136 4.136 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.254 0.746 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.208 0.792 41 H 0.162 0.838 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 0.992 28.963 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.123 3.877 3 H 0.049 0.951 4 C -0.633 4.633 5 H 0.051 0.949 6 C -0.215 4.215 7 N -0.577 5.577 8 Si 0.906 3.094 9 H -0.175 1.175 10 H -0.196 1.196 11 H -0.218 1.218 12 N -0.328 5.328 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.477 6.477 16 C -0.140 4.140 17 C -0.012 4.012 18 C -0.162 4.162 19 C -0.044 4.044 20 C -0.764 4.764 21 S 2.671 3.329 22 O -0.914 6.914 23 O -0.911 6.911 24 C -0.332 4.332 25 F -0.150 7.150 26 F -0.152 7.152 27 C -0.042 4.042 28 C -0.154 4.154 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.180 0.820 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.218 3.416 27.635 28.532 hybrid contribution 0.698 -2.413 0.359 2.537 sum 6.916 1.004 27.994 28.853 Atomic orbital electron populations 1.22250 0.96351 1.01991 1.00317 1.19077 0.92098 0.93545 0.82985 0.95097 1.22438 1.38768 1.09360 0.92775 0.94910 1.26902 0.96924 1.05826 0.91859 1.70937 1.38513 1.17021 1.31239 0.83523 0.77496 0.72367 0.76042 1.17480 1.19563 1.21810 1.48023 1.49406 1.13429 1.21900 1.21855 1.01294 0.80025 1.02881 1.21130 0.78129 0.86739 0.85168 1.90668 1.59442 1.19479 1.78104 1.20917 1.02036 0.98086 0.92929 1.19974 0.93988 0.94248 0.92943 1.21394 0.93983 1.00478 1.00359 1.21112 1.01183 0.90773 0.91312 1.30135 1.08328 1.21418 1.16546 1.06281 0.74954 0.75565 0.76137 1.93631 1.53633 1.81896 1.62245 1.93627 1.62715 1.52090 1.82635 1.32925 0.89677 0.96147 1.14403 1.93091 1.50686 1.90840 1.80411 1.93094 1.76772 1.55430 1.89893 1.21187 0.91399 0.94318 0.97273 1.21429 1.01407 0.96387 0.96213 0.93422 0.91741 0.92469 0.93648 0.93796 0.87389 0.91031 0.83860 0.85546 0.84310 0.82625 0.77528 0.82020 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.02 8.65 71.98 0.62 -5.40 16 2 C 0.23 10.66 2.21 44.24 0.10 10.76 16 3 H 0.03 1.67 5.40 -2.39 -0.01 1.65 16 4 C -0.59 -32.94 8.77 25.60 0.22 -32.72 16 5 H 0.03 1.95 7.74 -2.91 -0.02 1.93 16 6 C -0.02 -0.95 5.43 84.66 0.46 -0.49 16 7 N -0.94 -58.42 13.70 21.45 0.29 -58.13 16 8 Si 1.08 51.69 25.28 68.60 1.73 53.42 16 9 H -0.25 -10.59 6.82 99.48 0.68 -9.91 16 10 H -0.27 -12.62 6.35 99.48 0.63 -11.99 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 N -0.60 -22.71 2.75 -826.82 -2.28 -24.99 16 13 C 0.08 2.27 9.43 127.77 1.20 3.47 16 14 C 0.50 18.13 7.67 87.66 0.67 18.80 16 15 O -0.60 -27.59 15.36 -3.03 -0.05 -27.64 16 16 C -0.10 -2.28 4.38 29.10 0.13 -2.16 16 17 C -0.01 -0.27 4.37 -19.87 -0.09 -0.35 16 18 C -0.14 -3.56 9.70 22.27 0.22 -3.34 16 19 C -0.02 -0.57 9.47 22.27 0.21 -0.36 16 20 C -0.68 -14.35 5.65 22.27 0.13 -14.23 16 21 S 2.50 40.46 5.39 -56.49 -0.30 40.15 16 22 O -0.92 -19.54 17.13 -127.65 -2.19 -21.73 16 23 O -0.91 -18.62 17.13 -127.65 -2.19 -20.80 16 24 C -0.19 -1.86 5.94 113.37 0.67 -1.18 16 25 F -0.17 -2.15 17.37 44.97 0.78 -1.37 16 26 F -0.17 -2.29 17.37 44.97 0.78 -1.51 16 27 C -0.02 -0.48 9.47 22.27 0.21 -0.27 16 28 C -0.14 -3.02 9.70 22.27 0.22 -2.80 16 29 H 0.05 1.94 4.41 -2.39 -0.01 1.93 16 30 H 0.06 2.40 6.88 -2.38 -0.02 2.38 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.25 15.89 8.72 -92.71 -0.81 15.08 16 33 H 0.04 1.28 8.09 -2.39 -0.02 1.27 16 34 H 0.11 1.85 6.44 -2.39 -0.02 1.83 16 35 H 0.07 2.03 6.53 -2.39 -0.02 2.01 16 36 H 0.14 2.11 7.35 -2.39 -0.02 2.09 16 37 H 0.13 2.34 8.05 -2.38 -0.02 2.32 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.16 2.94 7.57 -2.91 -0.02 2.92 16 40 H 0.21 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.16 2.60 7.57 -2.91 -0.02 2.57 16 42 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -85.04 369.76 2.50 -82.54 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.93 Total: 10.33 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.98 Total: -30.27 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.98 Total: -83.11 kcal Atomic # 8 Polarization: -65.76 SS G_CDS: -4.42 Total: -70.17 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 1.56 Total: -2.89 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 1.73 Total: 53.42 kcal Atomic # 16 Polarization: 40.46 SS G_CDS: -0.30 Total: 40.15 kcal Total: -85.04 2.50 -82.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076992127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.063 kcal (2) G-P(sol) polarization free energy of solvation -85.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds