Wall clock time and date at job start Tue Mar 31 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35701 * 116.99655 * 2 1 4 4 C 1.38681 * 120.13039 * 0.02562 * 3 2 1 5 5 C 1.38061 * 120.11670 * 179.97438 * 4 3 2 6 6 C 1.38725 * 120.36567 * 359.97438 * 5 4 3 7 7 F 1.35105 * 119.87070 * 180.02562 * 6 5 4 8 8 C 1.37985 * 120.24997 * 359.76213 * 6 5 4 9 9 C 1.39729 * 119.88222 * 0.51407 * 8 6 5 10 10 C 1.47510 * 120.18375 * 179.74148 * 9 8 6 11 11 O 1.21605 * 120.00019 * 179.72916 * 10 9 8 12 12 N 1.34782 * 119.99651 * 359.72097 * 10 9 8 13 13 C 1.40066 * 119.99645 * 185.53077 * 12 10 9 14 14 C 1.38661 * 120.10411 * 24.83644 * 13 12 10 15 15 C 1.38248 * 120.01124 * 180.02562 * 14 13 12 16 16 C 1.38301 * 120.20974 * 359.97438 * 15 14 13 17 17 C 1.38207 * 120.20276 * 0.02562 * 16 15 14 18 18 C 1.38781 * 119.99029 * 359.97438 * 17 16 15 19 19 S 1.76193 * 120.10500 * 180.02562 * 18 17 16 20 20 C 1.81401 * 102.99977 * 0.02562 * 19 18 17 21 21 C 1.50704 * 109.47237 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99605 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99836 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47544 * 60.00453 * 25 23 21 27 27 H 1.48506 * 109.46929 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47490 * 300.00190 * 25 23 21 29 29 H 1.09002 * 109.47326 * 300.00108 * 1 2 3 30 30 H 1.08995 * 109.47214 * 60.00092 * 1 2 3 31 31 H 1.09004 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.93659 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.81143 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05646 * 180.27293 * 8 6 5 35 35 H 0.96998 * 120.00174 * 5.54220 * 12 10 9 36 36 H 1.08000 * 119.99524 * 0.02562 * 14 13 12 37 37 H 1.08003 * 119.89953 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.90093 * 180.27520 * 16 15 14 39 39 H 1.08001 * 120.00506 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.46910 * 299.99526 * 20 19 18 41 41 H 1.08999 * 109.47055 * 59.99906 * 20 19 18 42 42 H 0.97006 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9193 3.6039 0.0011 6 6 3.3041 3.6851 0.0016 7 9 3.9073 4.8940 0.0027 8 6 4.0678 2.5359 0.0066 9 6 3.4441 1.2855 0.0002 10 6 4.2541 0.0527 -0.0003 11 8 3.7078 -1.0337 -0.0009 12 7 5.5997 0.1305 -0.0003 13 6 6.3685 -1.0344 -0.1177 14 6 5.8374 -2.1594 -0.7302 15 6 6.5977 -3.3083 -0.8445 16 6 7.8889 -3.3405 -0.3500 17 6 8.4270 -2.2242 0.2620 18 6 7.6711 -1.0664 0.3813 19 16 8.3543 0.3586 1.1605 20 6 10.0229 -0.1868 1.6178 21 6 10.7489 0.9403 2.3060 22 1 10.2556 1.8897 2.4539 23 6 12.0423 0.7592 2.7478 24 7 12.6427 -0.3970 2.5681 25 14 12.9419 2.1561 3.6014 26 1 12.1972 2.5504 4.8242 27 1 14.3079 1.7097 3.9757 28 1 13.0360 3.3190 2.6827 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2137 2.3186 0.0014 33 1 1.3283 4.5078 0.0019 34 1 5.1458 2.6027 0.0114 35 1 6.0356 0.9932 0.0812 36 1 4.8296 -2.1381 -1.1179 37 1 6.1824 -4.1834 -1.3223 38 1 8.4800 -4.2392 -0.4460 39 1 9.4357 -2.2527 0.6467 40 1 9.9540 -1.0404 2.2921 41 1 10.5693 -0.4760 0.7201 42 1 13.5526 -0.5245 2.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:01 Heat of formation + Delta-G solvation = -59.729905 kcal Electronic energy + Delta-G solvation = -28459.163428 eV Core-core repulsion = 24217.522572 eV Total energy + Delta-G solvation = -4241.640856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.09370 -41.04161 -39.82724 -38.05174 -37.42004 -34.69858 -33.27644 -32.13662 -30.74257 -30.14177 -29.22281 -28.60442 -27.55769 -24.81264 -23.48859 -22.76743 -22.70819 -21.87477 -20.42723 -18.97016 -18.02596 -17.66968 -17.27661 -16.47734 -16.35110 -16.29713 -16.20475 -15.68172 -15.23528 -15.10412 -15.01280 -14.84901 -14.51097 -14.22198 -13.89128 -13.43149 -13.32208 -13.16157 -13.06190 -12.96909 -12.66309 -12.38697 -12.27760 -12.20968 -11.80151 -11.54714 -11.30747 -11.21855 -10.93791 -10.79613 -10.39219 -10.07734 -9.73900 -9.71978 -9.62584 -9.21959 -9.17177 -8.65028 -8.52440 -7.97205 -6.60127 -6.28858 -4.34868 0.29159 0.77939 1.56031 1.71815 2.36411 2.60567 2.83406 3.01056 3.22988 3.26802 3.30119 3.38785 3.58430 3.85824 4.12502 4.16221 4.22790 4.27830 4.57232 4.65439 4.78655 4.80312 5.01915 5.08735 5.14293 5.17437 5.30864 5.36238 5.46813 5.56908 5.61159 5.67147 5.80451 5.84655 6.21067 6.22352 6.46923 6.57357 6.72240 6.87476 6.91958 6.93060 6.96283 7.29961 7.45926 7.63461 7.86617 8.10654 8.65726 9.29263 10.82224 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002814 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.101085 B = 9947.821597 C =12419.119231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.276 6.276 3 C 0.179 3.821 4 C -0.193 4.193 5 C -0.084 4.084 6 C 0.056 3.944 7 F -0.134 7.134 8 C -0.079 4.079 9 C -0.143 4.143 10 C 0.561 3.439 11 O -0.497 6.497 12 N -0.657 5.657 13 C 0.152 3.848 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.096 4.096 19 S -0.174 6.174 20 C 0.079 3.921 21 C -0.521 4.521 22 H 0.068 0.932 23 C 0.069 3.931 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.412 0.588 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.546 2.766 -7.684 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.187 6.187 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.103 4.103 6 C 0.037 3.963 7 F -0.113 7.113 8 C -0.099 4.099 9 C -0.147 4.147 10 C 0.349 3.651 11 O -0.373 6.373 12 N -0.302 5.302 13 C 0.052 3.948 14 C -0.138 4.138 15 C -0.143 4.143 16 C -0.138 4.138 17 C -0.139 4.139 18 C -0.211 4.211 19 S 0.072 5.928 20 C -0.067 4.067 21 C -0.560 4.560 22 H 0.086 0.914 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.250 0.750 36 H 0.162 0.838 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.117 2.943 -7.399 25.398 hybrid contribution 1.311 0.292 0.351 1.388 sum -22.807 3.235 -7.048 24.089 Atomic orbital electron populations 1.23220 0.78409 1.04678 1.01284 1.86410 1.20992 1.24834 1.86429 1.18995 0.90691 0.85255 0.92036 1.21090 1.00759 0.90908 1.08406 1.21126 0.92714 0.98925 0.97547 1.17317 0.90819 0.80581 1.07596 1.91543 1.83623 1.41841 1.94299 1.21258 1.01150 0.90027 0.97416 1.19047 0.90863 0.93142 1.11613 1.17848 0.81470 0.88676 0.77110 1.90792 1.71343 1.27963 1.47157 1.43401 1.05687 1.09528 1.71570 1.17171 0.89852 0.87615 1.00191 1.21214 1.01203 0.92038 0.99380 1.20942 0.94293 0.97718 1.01337 1.21036 0.95577 0.98035 0.99199 1.21222 1.00326 0.91911 1.00403 1.21795 0.96182 0.99784 1.03354 1.85002 1.21364 1.16628 1.69762 1.21357 0.85171 1.00323 0.99867 1.20572 0.98251 0.98036 1.39151 0.91391 1.24942 0.96811 0.96322 0.95507 1.69932 1.13680 1.23255 1.45736 0.86382 0.78532 0.81632 0.79966 1.19822 1.20952 1.19818 0.92393 0.92422 0.87693 0.83642 0.83825 0.83317 0.75023 0.83843 0.86115 0.86109 0.84694 0.93671 0.93690 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.28 -3.14 8.57 -40.71 -0.35 -3.49 16 3 C 0.18 1.95 6.70 -38.71 -0.26 1.69 16 4 C -0.19 -1.49 9.03 -39.48 -0.36 -1.85 16 5 C -0.08 -0.65 10.01 -39.47 -0.39 -1.05 16 6 C 0.06 0.56 7.28 -39.49 -0.29 0.28 16 7 F -0.13 -1.47 17.26 2.25 0.04 -1.44 16 8 C -0.08 -0.86 9.51 -39.12 -0.37 -1.24 16 9 C -0.14 -1.77 5.88 -104.85 -0.62 -2.39 16 10 C 0.56 8.55 7.57 -12.48 -0.09 8.46 16 11 O -0.50 -8.67 12.32 -16.63 -0.20 -8.88 16 12 N -0.66 -10.27 5.12 -10.65 -0.05 -10.32 16 13 C 0.15 2.69 6.44 -83.45 -0.54 2.15 16 14 C -0.12 -1.93 8.72 -39.42 -0.34 -2.28 16 15 C -0.12 -1.82 10.04 -39.55 -0.40 -2.21 16 16 C -0.12 -1.86 10.04 -39.57 -0.40 -2.26 16 17 C -0.11 -2.12 9.36 -39.39 -0.37 -2.49 16 18 C -0.10 -1.85 6.12 -38.90 -0.24 -2.08 16 19 S -0.17 -3.64 20.55 -107.50 -2.21 -5.85 16 20 C 0.08 1.98 4.09 36.01 0.15 2.13 16 21 C -0.52 -14.11 9.13 -34.44 -0.31 -14.42 16 22 H 0.07 1.82 7.71 -52.48 -0.40 1.41 16 23 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 25 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 0.68 6.29 -52.49 -0.33 0.35 16 33 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.15 1.51 6.42 -52.49 -0.34 1.17 16 35 H 0.41 5.91 5.69 -40.82 -0.23 5.67 16 36 H 0.14 2.35 5.79 -52.49 -0.30 2.05 16 37 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.14 2.65 5.88 -52.49 -0.31 2.34 16 40 H 0.05 1.18 7.75 -51.92 -0.40 0.78 16 41 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -31.72 372.37 -9.73 -41.45 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.34 Total: 6.15 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.94 Total: -14.67 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.68 Total: -34.66 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.55 Total: -12.37 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.21 Total: -5.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.72 -9.73 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.278 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds