Wall clock time and date at job start Tue Mar 31 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35701 * 116.99655 * 2 1 4 4 C 1.38681 * 120.13039 * 0.02562 * 3 2 1 5 5 C 1.38061 * 120.11670 * 179.97438 * 4 3 2 6 6 C 1.38725 * 120.36567 * 359.97438 * 5 4 3 7 7 F 1.35105 * 119.87070 * 180.02562 * 6 5 4 8 8 C 1.37985 * 120.24997 * 359.76213 * 6 5 4 9 9 C 1.39729 * 119.88222 * 0.51407 * 8 6 5 10 10 C 1.47510 * 120.18375 * 179.74148 * 9 8 6 11 11 O 1.21605 * 120.00019 * 179.72916 * 10 9 8 12 12 N 1.34782 * 119.99651 * 359.72097 * 10 9 8 13 13 C 1.40066 * 119.99645 * 185.53077 * 12 10 9 14 14 C 1.38661 * 120.10411 * 24.83644 * 13 12 10 15 15 C 1.38248 * 120.01124 * 180.02562 * 14 13 12 16 16 C 1.38301 * 120.20974 * 359.97438 * 15 14 13 17 17 C 1.38207 * 120.20276 * 0.02562 * 16 15 14 18 18 C 1.38781 * 119.99029 * 359.97438 * 17 16 15 19 19 S 1.76193 * 120.10500 * 180.02562 * 18 17 16 20 20 C 1.81401 * 102.99977 * 0.02562 * 19 18 17 21 21 C 1.50704 * 109.47237 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99605 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99836 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47544 * 60.00453 * 25 23 21 27 27 H 1.48506 * 109.46929 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47490 * 300.00190 * 25 23 21 29 29 H 1.09002 * 109.47326 * 300.00108 * 1 2 3 30 30 H 1.08995 * 109.47214 * 60.00092 * 1 2 3 31 31 H 1.09004 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.93659 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.81143 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05646 * 180.27293 * 8 6 5 35 35 H 0.96998 * 120.00174 * 5.54220 * 12 10 9 36 36 H 1.08000 * 119.99524 * 0.02562 * 14 13 12 37 37 H 1.08003 * 119.89953 * 180.02562 * 15 14 13 38 38 H 1.07996 * 119.90093 * 180.27520 * 16 15 14 39 39 H 1.08001 * 120.00506 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.46910 * 299.99526 * 20 19 18 41 41 H 1.08999 * 109.47055 * 59.99906 * 20 19 18 42 42 H 0.97006 * 119.99731 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2923 2.3739 0.0005 5 6 1.9193 3.6039 0.0011 6 6 3.3041 3.6851 0.0016 7 9 3.9073 4.8940 0.0027 8 6 4.0678 2.5359 0.0066 9 6 3.4441 1.2855 0.0002 10 6 4.2541 0.0527 -0.0003 11 8 3.7078 -1.0337 -0.0009 12 7 5.5997 0.1305 -0.0003 13 6 6.3685 -1.0344 -0.1177 14 6 5.8374 -2.1594 -0.7302 15 6 6.5977 -3.3083 -0.8445 16 6 7.8889 -3.3405 -0.3500 17 6 8.4270 -2.2242 0.2620 18 6 7.6711 -1.0664 0.3813 19 16 8.3543 0.3586 1.1605 20 6 10.0229 -0.1868 1.6178 21 6 10.7489 0.9403 2.3060 22 1 10.2556 1.8897 2.4539 23 6 12.0423 0.7592 2.7478 24 7 12.6427 -0.3970 2.5681 25 14 12.9419 2.1561 3.6014 26 1 12.1972 2.5504 4.8242 27 1 14.3079 1.7097 3.9757 28 1 13.0360 3.3190 2.6827 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2137 2.3186 0.0014 33 1 1.3283 4.5078 0.0019 34 1 5.1458 2.6027 0.0114 35 1 6.0356 0.9932 0.0812 36 1 4.8296 -2.1381 -1.1179 37 1 6.1824 -4.1834 -1.3223 38 1 8.4800 -4.2392 -0.4460 39 1 9.4357 -2.2527 0.6467 40 1 9.9540 -1.0404 2.2921 41 1 10.5693 -0.4760 0.7201 42 1 13.5526 -0.5245 2.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078568603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:01 Heat of formation + Delta-G solvation = -76.061758 kcal Electronic energy + Delta-G solvation = -28459.871631 eV Core-core repulsion = 24217.522572 eV Total energy + Delta-G solvation = -4242.349059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.89303 -42.03882 -40.83260 -39.25872 -38.22194 -35.96913 -35.33782 -32.98426 -32.16146 -30.86693 -30.69716 -30.37194 -28.11399 -25.84956 -25.31977 -24.10602 -23.69162 -22.93695 -21.58567 -19.97554 -19.13688 -18.71232 -18.42563 -18.13336 -17.58036 -17.28469 -17.04314 -16.81340 -16.43176 -16.27759 -16.07521 -15.90140 -15.59367 -15.48454 -15.02623 -14.80839 -14.73847 -14.55056 -14.25712 -14.13045 -13.94216 -13.84699 -13.34592 -13.16493 -12.89879 -12.78471 -12.74904 -12.56167 -12.19079 -11.92808 -11.91460 -11.67904 -11.57157 -11.01091 -10.93964 -10.83726 -10.53549 -10.41030 -9.38626 -9.22424 -8.36847 -8.22772 -6.51428 -0.53038 0.03735 0.22936 0.35232 0.73583 1.40053 1.42683 1.51268 1.61036 1.73845 1.89603 2.20469 2.34555 2.48304 2.78677 2.98465 3.06431 3.39723 3.51789 3.82906 3.90175 3.96870 4.12842 4.22126 4.35138 4.36716 4.43175 4.45914 4.46871 4.48266 4.75322 4.78737 4.83991 4.84689 4.89387 4.94586 4.97346 5.15111 5.26651 5.41765 5.51087 5.51413 5.54470 5.80173 5.98899 6.19596 6.32188 6.55159 6.91440 7.17352 8.75012 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.002814 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.101085 B = 9947.821597 C =12419.119231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.308 6.308 3 C 0.174 3.826 4 C -0.179 4.179 5 C -0.065 4.065 6 C 0.042 3.958 7 F -0.142 7.142 8 C -0.085 4.085 9 C -0.171 4.171 10 C 0.560 3.440 11 O -0.524 6.524 12 N -0.659 5.659 13 C 0.150 3.850 14 C -0.124 4.124 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.123 4.123 19 S -0.162 6.162 20 C 0.085 3.915 21 C -0.543 4.543 22 H 0.067 0.933 23 C 0.019 3.981 24 N -0.921 5.921 25 Si 0.977 3.023 26 H -0.266 1.266 27 H -0.277 1.277 28 H -0.265 1.265 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.185 0.815 33 H 0.179 0.821 34 H 0.145 0.855 35 H 0.414 0.586 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.249 3.680 -8.131 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.219 6.219 3 C 0.125 3.875 4 C -0.197 4.197 5 C -0.084 4.084 6 C 0.023 3.977 7 F -0.121 7.121 8 C -0.105 4.105 9 C -0.175 4.175 10 C 0.351 3.649 11 O -0.401 6.401 12 N -0.304 5.304 13 C 0.049 3.951 14 C -0.146 4.146 15 C -0.124 4.124 16 C -0.136 4.136 17 C -0.154 4.154 18 C -0.238 4.238 19 S 0.082 5.918 20 C -0.062 4.062 21 C -0.582 4.582 22 H 0.086 0.914 23 C -0.183 4.183 24 N -0.559 5.559 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.201 1.201 28 H -0.189 1.189 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.202 0.798 33 H 0.197 0.803 34 H 0.162 0.838 35 H 0.253 0.747 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.169 0.831 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.848 3.857 -7.860 28.239 hybrid contribution 1.940 -0.086 0.406 1.984 sum -24.908 3.771 -7.453 26.271 Atomic orbital electron populations 1.23551 0.75895 1.05910 1.03225 1.86367 1.23755 1.25520 1.86306 1.19223 0.90289 0.86337 0.91630 1.21464 1.02364 0.89439 1.06431 1.21532 0.91737 1.00355 0.94731 1.17505 0.91880 0.79865 1.08463 1.91524 1.83985 1.42118 1.94467 1.21223 1.01224 0.90208 0.97804 1.18891 0.91634 0.92088 1.14906 1.18322 0.81110 0.89531 0.75955 1.90750 1.71635 1.29180 1.48581 1.43481 1.06084 1.09132 1.71696 1.17355 0.89331 0.88756 0.99664 1.21427 1.01563 0.92243 0.99367 1.21387 0.93414 0.98249 0.99367 1.21337 0.96227 0.97946 0.98050 1.21229 0.99674 0.93047 1.01451 1.21780 0.97266 0.99353 1.05393 1.84638 1.18400 1.17884 1.70830 1.20983 0.87833 0.99159 0.98224 1.20923 0.99083 0.98494 1.39722 0.91448 1.25890 0.97568 0.98900 0.95938 1.70046 1.14123 1.25213 1.46532 0.85323 0.77329 0.78448 0.78954 1.19084 1.20149 1.18921 0.90523 0.90223 0.87080 0.79829 0.80327 0.83753 0.74685 0.83471 0.82165 0.83117 0.86769 0.96101 0.95820 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.31 -6.63 8.57 -69.27 -0.59 -7.22 16 3 C 0.17 3.54 6.70 22.83 0.15 3.69 16 4 C -0.18 -2.15 9.03 22.33 0.20 -1.95 16 5 C -0.06 -0.79 10.01 22.34 0.22 -0.57 16 6 C 0.04 0.79 7.28 22.33 0.16 0.95 16 7 F -0.14 -2.98 17.26 44.97 0.78 -2.20 16 8 C -0.09 -1.87 9.51 22.57 0.21 -1.66 16 9 C -0.17 -4.26 5.88 -20.02 -0.12 -4.38 16 10 C 0.56 17.53 7.57 86.69 0.66 18.18 16 11 O -0.52 -18.56 12.32 16.89 0.21 -18.35 16 12 N -0.66 -21.39 5.12 -305.87 -1.56 -22.96 16 13 C 0.15 5.42 6.44 38.24 0.25 5.66 16 14 C -0.12 -4.05 8.72 22.37 0.19 -3.86 16 15 C -0.10 -2.89 10.04 22.29 0.22 -2.67 16 16 C -0.12 -3.53 10.04 22.28 0.22 -3.31 16 17 C -0.13 -5.00 9.36 22.39 0.21 -4.79 16 18 C -0.12 -4.93 6.12 22.71 0.14 -4.79 16 19 S -0.16 -7.16 20.55 -56.49 -1.16 -8.32 16 20 C 0.09 4.53 4.09 71.24 0.29 4.82 16 21 C -0.54 -30.53 9.13 25.60 0.23 -30.29 16 22 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 23 C 0.02 1.04 5.46 84.65 0.46 1.50 16 24 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 25 Si 0.98 42.99 29.54 68.60 2.03 45.02 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 29 H 0.08 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.08 0.41 7.66 -2.39 -0.02 0.39 16 31 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.18 0.76 6.29 -2.91 -0.02 0.74 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.14 3.12 6.42 -2.91 -0.02 3.11 16 35 H 0.41 12.58 5.69 -92.71 -0.53 12.06 16 36 H 0.15 4.75 5.79 -2.91 -0.02 4.73 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.11 4.83 5.88 -2.91 -0.02 4.81 16 40 H 0.02 1.17 7.75 -2.39 -0.02 1.15 16 41 H 0.02 1.32 7.75 -2.39 -0.02 1.30 16 42 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -72.06 372.37 5.37 -66.69 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.57 Total: 22.85 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.83 Total: -22.26 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.28 Total: -76.19 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.39 Total: -25.57 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.16 Total: -8.32 kcal Total: -72.06 5.37 -66.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.377 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds