Wall clock time and date at job start Tue Mar 31 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46994 * 2 1 4 4 C 1.35977 * 117.00046 * 179.97438 * 3 2 1 5 5 C 1.38728 * 119.98272 * 179.97438 * 4 3 2 6 6 C 1.38087 * 120.01374 * 180.02562 * 5 4 3 7 7 C 1.38864 * 119.98681 * 359.97438 * 6 5 4 8 8 N 1.40036 * 120.01565 * 179.97438 * 7 6 5 9 9 C 1.46509 * 119.99747 * 172.59707 * 8 7 6 10 10 C 1.50699 * 109.47101 * 94.49562 * 9 8 7 11 11 H 1.07991 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99731 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99833 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47643 * 89.99747 * 14 12 10 16 16 H 1.48499 * 109.47199 * 209.99880 * 14 12 10 17 17 H 1.48508 * 109.47145 * 329.99458 * 14 12 10 18 18 C 1.34775 * 120.00398 * 352.32461 * 8 7 6 19 19 O 1.21787 * 119.99803 * 5.66963 * 18 8 7 20 20 C 1.41702 * 120.00127 * 185.66657 * 18 8 7 21 21 S 1.75816 * 125.47316 * 8.60328 * 20 18 8 22 22 C 1.70575 * 91.65979 * 179.97438 * 21 20 18 23 23 C 1.33617 * 111.15134 * 0.02562 * 22 21 20 24 24 C 1.37282 * 125.47647 * 188.29171 * 20 18 8 25 25 O 1.35790 * 123.46978 * 359.97438 * 24 20 18 26 26 C 1.42901 * 116.99731 * 179.97438 * 25 24 20 27 27 C 1.38864 * 119.96229 * 0.26014 * 7 6 5 28 28 C 1.38083 * 119.98343 * 359.50335 * 27 7 6 29 29 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47491 * 300.00000 * 1 2 3 31 31 H 1.08999 * 109.47257 * 60.00298 * 1 2 3 32 32 H 1.09000 * 109.47491 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.47256 * 120.00212 * 2 1 3 34 34 H 1.08001 * 119.98975 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.00668 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46976 * 214.50068 * 9 8 7 37 37 H 1.09007 * 109.46910 * 334.49478 * 9 8 7 38 38 H 0.97002 * 120.00015 * 179.97438 * 13 12 10 39 39 H 1.08002 * 124.42915 * 179.97438 * 22 21 20 40 40 H 1.08002 * 122.45951 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47227 * 299.99621 * 26 25 24 42 42 H 1.09007 * 109.47285 * 59.99889 * 26 25 24 43 43 H 1.08997 * 109.47116 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00618 * 179.74289 * 27 7 6 45 45 H 1.08001 * 119.98963 * 180.20919 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8841 2.8076 0.0000 6 6 5.2530 2.9893 0.0001 7 6 6.0993 1.8883 0.0011 8 7 7.4876 2.0719 0.0006 9 6 8.3787 0.9207 0.1652 10 6 8.7962 0.4109 -1.1901 11 1 8.4344 0.8960 -2.0845 12 6 9.6402 -0.6750 -1.2881 13 7 10.0812 -1.2655 -0.1988 14 14 10.1583 -1.3066 -2.9679 15 1 11.4017 -0.6160 -3.3946 16 1 10.4054 -2.7689 -2.8924 17 1 9.0796 -1.0371 -3.9524 18 6 8.0040 3.3068 -0.1568 19 8 7.2663 4.2750 -0.1950 20 6 9.4054 3.4785 -0.2778 21 16 10.5805 2.1830 -0.4564 22 6 11.8719 3.2957 -0.5175 23 6 11.4310 4.5524 -0.4089 24 6 10.0631 4.6836 -0.2805 25 8 9.4330 5.8809 -0.1652 26 6 10.2540 7.0504 -0.1840 27 6 5.5681 0.6053 -0.0033 28 6 4.1991 0.4252 0.0016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2258 3.6637 -0.0012 35 1 5.6653 3.9875 -0.0008 36 1 9.2621 1.2226 0.7279 37 1 7.8562 0.1311 0.7053 38 1 10.6747 -2.0297 -0.2678 39 1 12.9103 3.0205 -0.6286 40 1 12.0959 5.4034 -0.4259 41 1 10.9616 7.0109 0.6442 42 1 10.7998 7.0962 -1.1264 43 1 9.6267 7.9362 -0.0844 44 1 6.2257 -0.2515 -0.0067 45 1 3.7859 -0.5727 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079352405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:40 Heat of formation + Delta-G solvation = -23.981970 kcal Electronic energy + Delta-G solvation = -30202.140693 eV Core-core repulsion = 26085.510289 eV Total energy + Delta-G solvation = -4116.630404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.31963 -39.45484 -38.83314 -36.74116 -35.30469 -35.05320 -32.95838 -31.70078 -30.48074 -29.93935 -28.38951 -27.43495 -26.43149 -24.23204 -23.86725 -23.41673 -21.93097 -21.33864 -20.01634 -18.95853 -17.87610 -17.40228 -17.03671 -16.65256 -15.90105 -15.77542 -15.61268 -15.41852 -15.06485 -14.70189 -14.43039 -14.30422 -13.90025 -13.31325 -13.16006 -13.14954 -13.00001 -12.81569 -12.66702 -12.52350 -12.39687 -12.26659 -12.08774 -11.73541 -11.66421 -11.56124 -11.24314 -11.07643 -11.01828 -10.72911 -10.55851 -10.51645 -10.32485 -10.08813 -9.37576 -8.95996 -8.91187 -8.56541 -8.42288 -8.08291 -7.31131 -6.87262 -6.50523 -4.55615 1.20132 1.93223 2.03414 2.42910 2.85591 2.98956 3.08026 3.14324 3.18984 3.49520 3.75470 3.89944 4.00545 4.07886 4.50376 4.80862 4.93377 5.00280 5.18943 5.23705 5.32828 5.36526 5.38218 5.45044 5.51452 5.56567 5.63867 5.75426 5.80301 5.88986 5.96941 6.06248 6.18656 6.23111 6.34000 6.45863 6.63052 6.68615 6.73513 6.80245 6.93589 7.02847 7.15769 7.40049 7.55567 7.67625 7.77131 7.93318 8.11863 8.46707 8.92446 9.01524 10.47436 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008993 B = 0.003884 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.790923 B = 7207.107823 C = 9884.289008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.084 3.916 5 C -0.135 4.135 6 C -0.140 4.140 7 C 0.143 3.857 8 N -0.541 5.541 9 C 0.211 3.789 10 C -0.529 4.529 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.866 5.866 14 Si 0.892 3.108 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.266 1.266 18 C 0.599 3.401 19 O -0.532 6.532 20 C -0.359 4.359 21 S 0.434 5.566 22 C -0.308 4.308 23 C -0.237 4.237 24 C 0.169 3.831 25 O -0.281 6.281 26 C 0.028 3.972 27 C -0.111 4.111 28 C -0.188 4.188 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.189 0.811 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.274 0.726 39 H 0.150 0.850 40 H 0.124 0.876 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.140 0.860 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 3.651 1.133 5.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.238 6.238 4 C 0.039 3.961 5 C -0.154 4.154 6 C -0.159 4.159 7 C 0.048 3.952 8 N -0.261 5.261 9 C 0.090 3.910 10 C -0.575 4.575 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.501 5.501 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.191 1.191 18 C 0.394 3.606 19 O -0.415 6.415 20 C -0.479 4.479 21 S 0.714 5.286 22 C -0.447 4.447 23 C -0.270 4.270 24 C 0.108 3.892 25 O -0.193 6.193 26 C -0.068 4.068 27 C -0.132 4.132 28 C -0.207 4.207 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.205 0.795 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.168 0.832 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.158 0.842 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.141 2.666 1.173 5.063 hybrid contribution 1.087 0.816 -0.933 1.649 sum -3.054 3.482 0.240 4.638 Atomic orbital electron populations 1.21756 0.93341 1.02423 1.03222 1.22655 0.95279 0.82897 1.01210 1.86017 1.19766 1.28305 1.89733 1.18970 0.81578 0.94415 1.01119 1.20376 0.94947 0.94088 1.05968 1.22748 0.91418 1.02451 0.99307 1.17909 0.82846 0.93819 1.00665 1.45709 1.04621 1.08982 1.66775 1.19936 0.88945 0.83752 0.98416 1.21525 1.28920 1.14309 0.92786 0.90626 1.24967 0.95110 0.95285 0.97618 1.69916 1.31257 1.21104 1.27800 0.86526 0.79737 0.78479 0.83485 1.19663 1.20465 1.19076 1.15705 0.86611 0.82136 0.76186 1.90365 1.58899 1.39879 1.52342 1.22862 0.98740 0.97287 1.29017 1.86785 0.86785 0.97249 1.57781 1.26783 1.09363 1.02983 1.05550 1.19589 0.93518 0.98355 1.15535 1.18110 0.90035 0.84991 0.96077 1.86247 1.34163 1.11475 1.87461 1.23002 0.96040 0.86893 1.00825 1.20867 0.94492 0.96432 1.01381 1.20906 0.93603 0.97458 1.08717 0.90757 0.91749 0.91746 0.92357 0.92386 0.85874 0.79526 0.92871 0.92166 0.91572 0.83216 0.85857 0.93225 0.93216 0.88745 0.84238 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.65 5.46 37.16 0.20 0.85 16 3 O -0.32 -5.05 10.14 -19.67 -0.20 -5.25 16 4 C 0.08 1.47 6.69 -39.22 -0.26 1.20 16 5 C -0.13 -2.45 9.98 -39.46 -0.39 -2.84 16 6 C -0.14 -2.84 9.05 -39.41 -0.36 -3.20 16 7 C 0.14 3.04 6.49 -83.65 -0.54 2.50 16 8 N -0.54 -12.02 2.70 -117.86 -0.32 -12.34 16 9 C 0.21 4.71 4.13 -5.19 -0.02 4.69 16 10 C -0.53 -12.21 6.45 -34.44 -0.22 -12.43 16 11 H 0.08 1.85 7.81 -52.49 -0.41 1.44 16 12 C 0.08 1.79 4.83 -17.82 -0.09 1.71 16 13 N -0.87 -20.24 13.29 55.43 0.74 -19.50 16 14 Si 0.89 18.28 29.54 -169.99 -5.02 13.26 16 15 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 C 0.60 13.74 7.38 -14.94 -0.11 13.63 16 19 O -0.53 -12.70 12.28 -12.04 -0.15 -12.85 16 20 C -0.36 -7.69 6.02 -38.61 -0.23 -7.92 16 21 S 0.43 8.61 15.24 -107.50 -1.64 6.98 16 22 C -0.31 -5.28 10.90 29.11 0.32 -4.97 16 23 C -0.24 -4.04 9.17 -41.28 -0.38 -4.42 16 24 C 0.17 3.33 6.70 -40.01 -0.27 3.06 16 25 O -0.28 -5.31 9.40 -36.24 -0.34 -5.65 16 26 C 0.03 0.37 9.94 101.05 1.00 1.37 16 27 C -0.11 -2.16 9.15 -39.41 -0.36 -2.52 16 28 C -0.19 -3.23 9.03 -39.46 -0.36 -3.58 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 34 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 35 H 0.19 4.05 4.53 -56.22 -0.25 3.80 16 36 H 0.05 1.21 4.98 -25.28 -0.13 1.09 16 37 H 0.06 1.37 6.30 -51.93 -0.33 1.05 16 38 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 39 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.12 1.75 6.99 -52.49 -0.37 1.38 16 41 H 0.05 0.56 7.87 -51.93 -0.41 0.15 16 42 H 0.05 0.57 7.89 -51.93 -0.41 0.16 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.14 2.76 6.27 -52.48 -0.33 2.43 16 45 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -27.22 376.77 -8.36 -35.58 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.43 Total: 7.96 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.68 Total: -13.86 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.42 Total: -31.84 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.69 Total: -23.75 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 16 Polarization: 8.61 SS G_CDS: -1.64 Total: 6.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.22 -8.36 -35.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079352405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.602 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds