Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.46994 * 2 1 4 4 C 1.35977 * 117.00046 * 179.97438 * 3 2 1 5 5 C 1.38728 * 119.98272 * 179.97438 * 4 3 2 6 6 C 1.38087 * 120.01374 * 180.02562 * 5 4 3 7 7 C 1.38864 * 119.98681 * 359.97438 * 6 5 4 8 8 N 1.40036 * 120.01565 * 179.97438 * 7 6 5 9 9 C 1.46509 * 119.99747 * 172.59707 * 8 7 6 10 10 C 1.50699 * 109.47101 * 94.49562 * 9 8 7 11 11 H 1.07991 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99731 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00076 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99833 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47643 * 89.99747 * 14 12 10 16 16 H 1.48499 * 109.47199 * 209.99880 * 14 12 10 17 17 H 1.48508 * 109.47145 * 329.99458 * 14 12 10 18 18 C 1.34775 * 120.00398 * 352.32461 * 8 7 6 19 19 O 1.21787 * 119.99803 * 5.66963 * 18 8 7 20 20 C 1.41702 * 120.00127 * 185.66657 * 18 8 7 21 21 S 1.75816 * 125.47316 * 8.60328 * 20 18 8 22 22 C 1.70575 * 91.65979 * 179.97438 * 21 20 18 23 23 C 1.33617 * 111.15134 * 0.02562 * 22 21 20 24 24 C 1.37282 * 125.47647 * 188.29171 * 20 18 8 25 25 O 1.35790 * 123.46978 * 359.97438 * 24 20 18 26 26 C 1.42901 * 116.99731 * 179.97438 * 25 24 20 27 27 C 1.38864 * 119.96229 * 0.26014 * 7 6 5 28 28 C 1.38083 * 119.98343 * 359.50335 * 27 7 6 29 29 H 1.09001 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47491 * 300.00000 * 1 2 3 31 31 H 1.08999 * 109.47257 * 60.00298 * 1 2 3 32 32 H 1.09000 * 109.47491 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.47256 * 120.00212 * 2 1 3 34 34 H 1.08001 * 119.98975 * 359.97438 * 5 4 3 35 35 H 1.07999 * 120.00668 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46976 * 214.50068 * 9 8 7 37 37 H 1.09007 * 109.46910 * 334.49478 * 9 8 7 38 38 H 0.97002 * 120.00015 * 179.97438 * 13 12 10 39 39 H 1.08002 * 124.42915 * 179.97438 * 22 21 20 40 40 H 1.08002 * 122.45951 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47227 * 299.99621 * 26 25 24 42 42 H 1.09007 * 109.47285 * 59.99889 * 26 25 24 43 43 H 1.08997 * 109.47116 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00618 * 179.74289 * 27 7 6 45 45 H 1.08001 * 119.98963 * 180.20919 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 3.8841 2.8076 0.0000 6 6 5.2530 2.9893 0.0001 7 6 6.0993 1.8883 0.0011 8 7 7.4876 2.0719 0.0006 9 6 8.3787 0.9207 0.1652 10 6 8.7962 0.4109 -1.1901 11 1 8.4344 0.8960 -2.0845 12 6 9.6402 -0.6750 -1.2881 13 7 10.0812 -1.2655 -0.1988 14 14 10.1583 -1.3066 -2.9679 15 1 11.4017 -0.6160 -3.3946 16 1 10.4054 -2.7689 -2.8924 17 1 9.0796 -1.0371 -3.9524 18 6 8.0040 3.3068 -0.1568 19 8 7.2663 4.2750 -0.1950 20 6 9.4054 3.4785 -0.2778 21 16 10.5805 2.1830 -0.4564 22 6 11.8719 3.2957 -0.5175 23 6 11.4310 4.5524 -0.4089 24 6 10.0631 4.6836 -0.2805 25 8 9.4330 5.8809 -0.1652 26 6 10.2540 7.0504 -0.1840 27 6 5.5681 0.6053 -0.0033 28 6 4.1991 0.4252 0.0016 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.2258 3.6637 -0.0012 35 1 5.6653 3.9875 -0.0008 36 1 9.2621 1.2226 0.7279 37 1 7.8562 0.1311 0.7053 38 1 10.6747 -2.0297 -0.2678 39 1 12.9103 3.0205 -0.6286 40 1 12.0959 5.4034 -0.4259 41 1 10.9616 7.0109 0.6442 42 1 10.7998 7.0962 -1.1264 43 1 9.6267 7.9362 -0.0844 44 1 6.2257 -0.2515 -0.0067 45 1 3.7859 -0.5727 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079352405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = -37.351863 kcal Electronic energy + Delta-G solvation = -30202.720455 eV Core-core repulsion = 26085.510289 eV Total energy + Delta-G solvation = -4117.210166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89418 -40.83058 -40.23499 -38.20669 -36.82037 -36.59470 -34.65931 -32.72915 -31.96866 -31.32907 -29.90097 -28.98895 -27.66719 -25.69603 -25.30708 -24.79666 -23.38027 -22.67496 -21.52561 -20.35193 -19.18239 -18.96003 -18.77376 -18.27978 -17.22460 -17.08980 -16.96002 -16.76213 -16.49065 -16.26354 -15.96000 -15.79209 -15.37468 -14.71580 -14.47536 -14.40805 -14.34736 -14.25507 -14.16584 -13.90762 -13.77922 -13.60273 -13.28599 -13.10517 -13.04663 -12.84050 -12.65982 -12.59592 -12.30994 -12.18171 -12.01484 -11.84743 -11.71810 -11.59058 -10.91484 -10.58268 -10.51657 -10.23146 -9.91877 -9.60499 -8.81114 -8.46885 -8.18637 -6.34149 -0.30523 0.43394 0.53723 0.91018 1.36037 1.47482 1.50343 1.53390 1.55896 2.11926 2.30775 2.36626 2.41321 2.68529 2.95832 3.05286 3.75830 3.93052 3.99787 4.10542 4.11834 4.25043 4.35846 4.36838 4.40759 4.42635 4.42773 4.55541 4.59305 4.69702 4.72650 4.86269 4.88263 4.98481 4.99725 5.07675 5.16438 5.20582 5.26372 5.31171 5.42471 5.49935 5.60759 5.64104 5.80833 6.16442 6.38776 6.48452 6.55682 6.69490 7.20230 7.28802 8.74697 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008993 B = 0.003884 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.790923 B = 7207.107823 C = 9884.289008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.093 3.907 5 C -0.137 4.137 6 C -0.151 4.151 7 C 0.112 3.888 8 N -0.545 5.545 9 C 0.223 3.777 10 C -0.534 4.534 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.886 5.886 14 Si 0.934 3.066 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.277 1.277 18 C 0.588 3.412 19 O -0.556 6.556 20 C -0.396 4.396 21 S 0.394 5.606 22 C -0.284 4.284 23 C -0.233 4.233 24 C 0.174 3.826 25 O -0.310 6.310 26 C 0.017 3.983 27 C -0.118 4.118 28 C -0.180 4.180 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.278 0.722 39 H 0.185 0.815 40 H 0.162 0.838 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 3.868 0.777 5.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.245 6.245 4 C 0.048 3.952 5 C -0.156 4.156 6 C -0.171 4.171 7 C 0.017 3.983 8 N -0.265 5.265 9 C 0.101 3.899 10 C -0.578 4.578 11 H 0.072 0.928 12 C -0.149 4.149 13 N -0.522 5.522 14 Si 0.759 3.241 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.202 1.202 18 C 0.384 3.616 19 O -0.441 6.441 20 C -0.516 4.516 21 S 0.671 5.329 22 C -0.422 4.422 23 C -0.265 4.265 24 C 0.112 3.888 25 O -0.222 6.222 26 C -0.077 4.077 27 C -0.138 4.138 28 C -0.199 4.199 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.202 0.798 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.149 0.851 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.792 2.865 0.816 4.822 hybrid contribution 0.920 0.922 -0.778 1.517 sum -2.871 3.786 0.038 4.752 Atomic orbital electron populations 1.21785 0.91104 1.04149 1.03205 1.23057 0.97106 0.81114 1.02031 1.86034 1.18233 1.30969 1.89232 1.18986 0.82688 0.93994 0.99581 1.20530 0.94252 0.95444 1.05392 1.22586 0.92431 1.01561 1.00513 1.18216 0.82682 0.94865 1.02527 1.45734 1.05137 1.08775 1.66837 1.19746 0.88690 0.83388 0.98034 1.21312 1.29595 1.14808 0.92092 0.92765 1.25321 0.94825 0.95105 0.99605 1.69958 1.31858 1.21549 1.28853 0.85889 0.79329 0.78295 0.80618 1.18720 1.19897 1.20208 1.16047 0.87420 0.82091 0.76062 1.90345 1.59591 1.40358 1.53795 1.22949 0.98369 0.98675 1.31623 1.86692 0.88057 0.98204 1.59938 1.26955 1.09976 1.01962 1.03304 1.19891 0.92689 0.99616 1.14283 1.18472 0.91044 0.84985 0.94339 1.86217 1.36523 1.12540 1.86965 1.23398 0.96633 0.85240 1.02477 1.20878 0.95520 0.95441 1.01970 1.21162 0.92504 0.98994 1.07217 0.88146 0.91702 0.91851 0.91644 0.91391 0.84101 0.81107 0.93155 0.93467 0.91274 0.79793 0.82044 0.91344 0.91555 0.86696 0.85078 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.04 0.88 5.46 71.98 0.39 1.28 16 3 O -0.33 -9.76 10.14 -93.29 -0.95 -10.71 16 4 C 0.09 3.18 6.69 22.50 0.15 3.33 16 5 C -0.14 -5.03 9.98 22.35 0.22 -4.81 16 6 C -0.15 -6.45 9.05 22.38 0.20 -6.25 16 7 C 0.11 5.00 6.49 38.13 0.25 5.25 16 8 N -0.54 -25.69 2.70 -644.98 -1.74 -27.43 16 9 C 0.22 10.49 4.13 85.63 0.35 10.84 16 10 C -0.53 -25.59 6.45 25.60 0.17 -25.43 16 11 H 0.05 2.79 7.81 -2.92 -0.02 2.77 16 12 C 0.06 2.68 4.83 84.66 0.41 3.09 16 13 N -0.89 -41.98 13.29 21.45 0.28 -41.70 16 14 Si 0.93 37.49 29.54 68.60 2.03 39.52 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 18 C 0.59 28.44 7.38 85.10 0.63 29.07 16 19 O -0.56 -28.05 12.28 11.78 0.14 -27.91 16 20 C -0.40 -17.47 6.02 22.90 0.14 -17.34 16 21 S 0.39 15.77 15.24 -56.49 -0.86 14.90 16 22 C -0.28 -9.04 10.90 66.77 0.73 -8.31 16 23 C -0.23 -7.31 9.17 21.17 0.19 -7.12 16 24 C 0.17 6.76 6.70 21.99 0.15 6.91 16 25 O -0.31 -11.52 9.40 -74.79 -0.70 -12.22 16 26 C 0.02 0.40 9.94 113.37 1.13 1.52 16 27 C -0.12 -4.73 9.15 22.38 0.20 -4.52 16 28 C -0.18 -6.10 9.03 22.35 0.20 -5.89 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 33 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 34 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.17 7.91 4.53 -62.07 -0.28 7.62 16 36 H 0.05 2.42 4.98 -19.33 -0.10 2.32 16 37 H 0.05 2.29 6.30 -2.38 -0.02 2.28 16 38 H 0.28 12.39 8.31 -92.71 -0.77 11.62 16 39 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.16 3.83 6.99 -2.91 -0.02 3.81 16 41 H 0.07 1.34 7.87 -2.39 -0.02 1.32 16 42 H 0.07 1.32 7.89 -2.38 -0.02 1.31 16 43 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.13 5.44 6.27 -2.91 -0.02 5.42 16 45 H 0.15 4.13 6.29 -2.91 -0.02 4.11 16 Total: -1.00 -61.35 376.77 5.14 -56.21 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.68 Total: 29.23 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 6.25 Total: -19.90 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -1.45 Total: -69.13 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.50 Total: -50.84 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: 15.77 SS G_CDS: -0.86 Total: 14.90 kcal Total: -61.35 5.14 -56.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079352405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -61.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds