Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47211 * 148.13114 * 3 2 1 5 5 C 1.36867 * 120.00131 * 274.89260 * 4 3 2 6 6 H 1.07996 * 120.00045 * 188.44032 * 5 4 3 7 7 C 1.39051 * 119.99999 * 8.44286 * 5 4 3 8 8 N 1.31362 * 120.00056 * 14.96879 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 194.97100 * 7 5 4 10 10 H 1.48500 * 109.47223 * 90.00157 * 9 7 5 11 11 H 1.48504 * 109.46730 * 209.99704 * 9 7 5 12 12 H 1.48494 * 109.47168 * 329.99745 * 9 7 5 13 13 C 1.34782 * 119.99904 * 94.88597 * 4 3 2 14 14 O 1.21590 * 119.99536 * 184.95926 * 13 4 3 15 15 C 1.47724 * 119.99777 * 4.96784 * 13 4 3 16 16 C 1.39664 * 120.14825 * 310.57700 * 15 13 4 17 17 C 1.37917 * 119.84309 * 180.02562 * 16 15 13 18 18 C 1.38401 * 120.15442 * 359.73449 * 17 16 15 19 19 C 1.38352 * 120.30078 * 0.54151 * 18 17 16 20 20 C 1.50707 * 119.92548 * 179.72717 * 19 18 17 21 21 O 1.42895 * 109.47029 * 269.73310 * 20 19 18 22 22 C 1.35908 * 116.99705 * 179.97438 * 21 20 19 23 23 C 1.38860 * 119.98532 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.25402 * 179.97438 * 23 22 21 25 25 C 1.37997 * 120.21315 * 0.04590 * 24 23 22 26 26 C 1.39630 * 119.95683 * 359.97438 * 25 24 23 27 27 C 1.43193 * 120.12239 * 179.97438 * 26 25 24 28 28 N 9.96629 * 150.64629 * 185.69354 * 15 1 2 29 29 C 1.38441 * 119.97898 * 179.97438 * 22 21 20 30 30 C 1.37959 * 120.15352 * 359.45607 * 19 18 17 31 31 H 1.09001 * 109.47510 * 28.13081 * 3 2 1 32 32 H 1.09002 * 109.46934 * 268.13095 * 3 2 1 33 33 H 0.96997 * 120.00524 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.08370 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.92625 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.85432 * 180.27534 * 18 17 16 37 37 H 1.08994 * 109.46885 * 149.72829 * 20 19 18 38 38 H 1.09001 * 109.46822 * 29.72920 * 20 19 18 39 39 H 1.08007 * 119.87026 * 0.02562 * 23 22 21 40 40 H 1.07996 * 119.89151 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.02151 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.10762 * 0.27339 * 29 22 21 43 43 H 1.08000 * 120.07643 * 180.24822 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1739 -0.7293 5 6 3.2286 1.1270 -2.0907 6 1 3.7139 1.9375 -2.6141 7 6 2.7387 0.0359 -2.7999 8 7 1.9017 -0.7983 -2.2261 9 14 3.2710 -0.2438 -4.5685 10 1 4.4896 -1.0921 -4.5904 11 1 2.1804 -0.9247 -5.3117 12 1 3.5658 1.0630 -5.2092 13 6 3.4137 2.2995 -0.0595 14 8 3.7320 3.3012 -0.6708 15 6 3.3754 2.3161 1.4171 16 6 2.2533 1.8348 2.0952 17 6 2.2240 1.8537 3.4739 18 6 3.3055 2.3430 4.1856 19 6 4.4180 2.8265 3.5201 20 6 5.5884 3.3631 4.3034 21 8 5.4127 4.7642 4.5225 22 6 6.3868 5.4065 5.2195 23 6 7.4889 4.7004 5.6832 24 6 8.4832 5.3483 6.3923 25 6 8.3867 6.7015 6.6451 26 6 7.2821 7.4200 6.1834 27 6 7.1781 8.8241 6.4442 28 7 7.0969 9.9385 6.6493 29 6 6.2795 6.7644 5.4669 30 6 4.4606 2.8135 2.1413 31 1 2.9718 -0.9054 -0.4845 32 1 2.9712 0.0343 1.0271 33 1 1.5602 -1.5596 -2.7206 34 1 1.4104 1.4487 1.5413 35 1 1.3571 1.4815 3.9996 36 1 3.2793 2.3514 5.2652 37 1 6.5080 3.1953 3.7430 38 1 5.6490 2.8500 5.2632 39 1 7.5701 3.6412 5.4883 40 1 9.3381 4.7935 6.7497 41 1 9.1655 7.2046 7.1990 42 1 5.4207 7.3138 5.1107 43 1 5.3313 3.1876 1.6232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = 65.553679 kcal Electronic energy + Delta-G solvation = -29541.238862 eV Core-core repulsion = 25325.339815 eV Total energy + Delta-G solvation = -4215.899048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.67038 -39.83309 -38.48981 -37.67600 -36.49247 -35.93155 -34.37576 -32.69392 -31.88627 -31.67554 -30.78647 -30.25997 -27.66247 -26.68868 -25.38810 -24.18915 -22.96324 -22.90474 -21.61714 -19.80181 -19.45518 -18.12450 -17.19069 -16.96494 -16.50327 -16.42213 -16.24367 -16.19599 -16.11425 -15.02889 -14.78999 -14.55934 -14.34596 -14.20141 -14.15801 -13.77617 -13.56523 -13.42693 -13.31318 -12.99033 -12.85164 -12.63668 -12.58128 -12.45595 -12.18449 -11.99793 -11.63037 -11.56344 -11.46917 -11.31106 -11.25994 -11.15431 -10.88293 -10.59756 -10.48293 -10.42401 -9.46935 -9.40079 -8.92534 -8.81520 -8.66524 -8.55416 -8.27300 -6.61510 -4.10787 0.31665 0.94845 1.14182 1.39419 2.26675 2.56967 2.86661 3.04391 3.14707 3.19287 3.42752 3.46442 3.58169 3.68785 3.92321 4.01655 4.06886 4.30358 4.50113 4.56718 4.59627 4.65889 4.77705 4.80356 4.84440 4.99136 5.04662 5.12274 5.14040 5.25553 5.42130 5.43102 5.53609 5.64953 5.71493 5.85394 5.87883 5.92464 6.06919 6.09719 6.12587 6.47342 6.51114 6.59343 6.63568 6.97989 7.03327 7.10559 7.32854 7.71911 8.15112 8.73467 8.85734 9.04504 9.58097 10.40123 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.001922 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.398252 B =14561.069866 C =15296.876816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.257 3.743 3 C 0.215 3.785 4 N -0.432 5.432 5 C -0.304 4.304 6 H 0.114 0.886 7 C 0.029 3.971 8 N -0.883 5.883 9 Si 0.938 3.062 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.483 3.517 14 O -0.569 6.569 15 C -0.096 4.096 16 C -0.090 4.090 17 C -0.125 4.125 18 C -0.090 4.090 19 C -0.110 4.110 20 C 0.106 3.894 21 O -0.302 6.302 22 C 0.137 3.863 23 C -0.182 4.182 24 C -0.079 4.079 25 C -0.113 4.113 26 C 0.010 3.990 27 C 0.257 3.743 28 N -0.413 5.413 29 C -0.106 4.106 30 C -0.052 4.052 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.277 0.723 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 1.801 18.578 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.060 4.060 3 C 0.088 3.912 4 N -0.150 5.150 5 C -0.431 4.431 6 H 0.132 0.868 7 C -0.174 4.174 8 N -0.523 5.523 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.272 3.728 14 O -0.453 6.453 15 C -0.099 4.099 16 C -0.109 4.109 17 C -0.143 4.143 18 C -0.108 4.108 19 C -0.110 4.110 20 C 0.032 3.968 21 O -0.215 6.215 22 C 0.091 3.909 23 C -0.201 4.201 24 C -0.097 4.097 25 C -0.134 4.134 26 C 0.006 3.994 27 C -0.059 4.059 28 N -0.088 5.088 29 C -0.127 4.127 30 C -0.071 4.071 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.533 3.909 18.374 21.537 hybrid contribution 0.518 -0.988 -1.052 1.534 sum 11.050 2.920 17.322 20.753 Atomic orbital electron populations 1.80919 1.13431 1.09087 1.12573 1.28986 0.95163 0.92100 0.89751 1.19090 0.81939 0.93707 0.96441 1.43607 1.54985 1.09268 1.07155 1.19895 1.36019 1.06559 0.80628 0.86823 1.25343 0.94937 0.96023 1.01050 1.69660 1.28205 1.16014 1.38457 0.85713 0.78205 0.78947 0.80708 1.19955 1.20896 1.19211 1.17901 0.85339 0.83764 0.85835 1.90664 1.53380 1.32448 1.68773 1.20212 0.94984 0.99917 0.94831 1.21714 0.97668 0.96821 0.94665 1.21043 0.98613 1.00858 0.93804 1.21052 0.92551 0.97572 0.99620 1.19229 0.95853 1.02641 0.93309 1.21656 0.97214 0.78600 0.99358 1.86249 1.42793 1.23393 1.69103 1.18768 0.88367 0.91620 0.92145 1.21580 0.94988 1.01228 1.02313 1.20884 0.98305 0.93771 0.96707 1.21061 0.97027 0.94358 1.00942 1.15637 0.96801 0.85043 1.01907 1.25605 0.93838 0.92592 0.93830 1.81273 1.07439 1.11811 1.08315 1.20391 0.99783 0.92093 1.00421 1.21049 0.97992 0.95662 0.92410 0.84751 0.89878 0.91203 0.85378 0.85530 0.85907 0.90610 0.90776 0.84450 0.84578 0.84913 0.84028 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.13 18.54 42.15 0.78 -10.35 16 2 C 0.26 5.57 10.62 -20.76 -0.22 5.35 16 3 C 0.22 4.23 4.76 -6.83 -0.03 4.20 16 4 N -0.43 -9.88 2.59 -119.05 -0.31 -10.19 16 5 C -0.30 -7.61 9.46 -15.00 -0.14 -7.75 16 6 H 0.11 3.00 7.26 -52.49 -0.38 2.62 16 7 C 0.03 0.69 5.16 -17.45 -0.09 0.60 16 8 N -0.88 -21.19 8.39 55.50 0.47 -20.72 16 9 Si 0.94 19.17 29.58 -169.99 -5.03 14.14 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 C 0.48 10.88 7.18 -12.38 -0.09 10.79 16 14 O -0.57 -14.90 16.64 5.29 0.09 -14.81 16 15 C -0.10 -1.71 4.90 -104.97 -0.51 -2.23 16 16 C -0.09 -1.44 7.57 -39.17 -0.30 -1.73 16 17 C -0.13 -1.58 10.03 -39.64 -0.40 -1.97 16 18 C -0.09 -0.99 9.69 -39.48 -0.38 -1.37 16 19 C -0.11 -1.30 5.50 -104.68 -0.58 -1.87 16 20 C 0.11 0.92 4.86 36.01 0.17 1.09 16 21 O -0.30 -3.14 10.12 -19.45 -0.20 -3.34 16 22 C 0.14 1.17 6.68 -39.28 -0.26 0.91 16 23 C -0.18 -1.13 9.03 -39.35 -0.36 -1.48 16 24 C -0.08 -0.39 10.02 -39.67 -0.40 -0.79 16 25 C -0.11 -0.65 9.75 -39.15 -0.38 -1.03 16 26 C 0.01 0.07 5.73 -106.95 -0.61 -0.54 16 27 C 0.26 2.44 15.33 -22.48 -0.34 2.09 16 28 N -0.41 -4.91 18.54 41.84 0.78 -4.13 16 29 C -0.11 -0.89 9.69 -39.01 -0.38 -1.27 16 30 C -0.05 -0.78 9.38 -39.17 -0.37 -1.14 16 31 H 0.14 2.69 6.31 -51.93 -0.33 2.37 16 32 H 0.08 1.34 5.52 -51.93 -0.29 1.05 16 33 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.13 2.27 4.81 -52.49 -0.25 2.02 16 35 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.08 0.55 7.60 -51.93 -0.39 0.16 16 38 H 0.07 0.45 7.59 -51.93 -0.39 0.06 16 39 H 0.14 0.60 6.28 -52.48 -0.33 0.28 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -31.70 383.09 -7.35 -39.05 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.04 Total: 2.72 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -5.67 Total: 1.87 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 1.71 Total: -45.40 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.11 Total: -18.15 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.70 -7.35 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.603 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds