Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47211 * 148.13114 * 3 2 1 5 5 C 1.36867 * 120.00131 * 274.89260 * 4 3 2 6 6 H 1.07996 * 120.00045 * 188.44032 * 5 4 3 7 7 C 1.39051 * 119.99999 * 8.44286 * 5 4 3 8 8 N 1.31362 * 120.00056 * 14.96879 * 7 5 4 9 9 Si 1.86800 * 119.99897 * 194.97100 * 7 5 4 10 10 H 1.48500 * 109.47223 * 90.00157 * 9 7 5 11 11 H 1.48504 * 109.46730 * 209.99704 * 9 7 5 12 12 H 1.48494 * 109.47168 * 329.99745 * 9 7 5 13 13 C 1.34782 * 119.99904 * 94.88597 * 4 3 2 14 14 O 1.21590 * 119.99536 * 184.95926 * 13 4 3 15 15 C 1.47724 * 119.99777 * 4.96784 * 13 4 3 16 16 C 1.39664 * 120.14825 * 310.57700 * 15 13 4 17 17 C 1.37917 * 119.84309 * 180.02562 * 16 15 13 18 18 C 1.38401 * 120.15442 * 359.73449 * 17 16 15 19 19 C 1.38352 * 120.30078 * 0.54151 * 18 17 16 20 20 C 1.50707 * 119.92548 * 179.72717 * 19 18 17 21 21 O 1.42895 * 109.47029 * 269.73310 * 20 19 18 22 22 C 1.35908 * 116.99705 * 179.97438 * 21 20 19 23 23 C 1.38860 * 119.98532 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.25402 * 179.97438 * 23 22 21 25 25 C 1.37997 * 120.21315 * 0.04590 * 24 23 22 26 26 C 1.39630 * 119.95683 * 359.97438 * 25 24 23 27 27 C 1.43193 * 120.12239 * 179.97438 * 26 25 24 28 28 N 9.96629 * 150.64629 * 185.69354 * 15 1 2 29 29 C 1.38441 * 119.97898 * 179.97438 * 22 21 20 30 30 C 1.37959 * 120.15352 * 359.45607 * 19 18 17 31 31 H 1.09001 * 109.47510 * 28.13081 * 3 2 1 32 32 H 1.09002 * 109.46934 * 268.13095 * 3 2 1 33 33 H 0.96997 * 120.00524 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.08370 * 0.02562 * 16 15 13 35 35 H 1.08004 * 119.92625 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.85432 * 180.27534 * 18 17 16 37 37 H 1.08994 * 109.46885 * 149.72829 * 20 19 18 38 38 H 1.09001 * 109.46822 * 29.72920 * 20 19 18 39 39 H 1.08007 * 119.87026 * 0.02562 * 23 22 21 40 40 H 1.07996 * 119.89151 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.02151 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.10762 * 0.27339 * 29 22 21 43 43 H 1.08000 * 120.07643 * 180.24822 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1739 -0.7293 5 6 3.2286 1.1270 -2.0907 6 1 3.7139 1.9375 -2.6141 7 6 2.7387 0.0359 -2.7999 8 7 1.9017 -0.7983 -2.2261 9 14 3.2710 -0.2438 -4.5685 10 1 4.4896 -1.0921 -4.5904 11 1 2.1804 -0.9247 -5.3117 12 1 3.5658 1.0630 -5.2092 13 6 3.4137 2.2995 -0.0595 14 8 3.7320 3.3012 -0.6708 15 6 3.3754 2.3161 1.4171 16 6 2.2533 1.8348 2.0952 17 6 2.2240 1.8537 3.4739 18 6 3.3055 2.3430 4.1856 19 6 4.4180 2.8265 3.5201 20 6 5.5884 3.3631 4.3034 21 8 5.4127 4.7642 4.5225 22 6 6.3868 5.4065 5.2195 23 6 7.4889 4.7004 5.6832 24 6 8.4832 5.3483 6.3923 25 6 8.3867 6.7015 6.6451 26 6 7.2821 7.4200 6.1834 27 6 7.1781 8.8241 6.4442 28 7 7.0969 9.9385 6.6493 29 6 6.2795 6.7644 5.4669 30 6 4.4606 2.8135 2.1413 31 1 2.9718 -0.9054 -0.4845 32 1 2.9712 0.0343 1.0271 33 1 1.5602 -1.5596 -2.7206 34 1 1.4104 1.4487 1.5413 35 1 1.3571 1.4815 3.9996 36 1 3.2793 2.3514 5.2652 37 1 6.5080 3.1953 3.7430 38 1 5.6490 2.8500 5.2632 39 1 7.5701 3.6412 5.4883 40 1 9.3381 4.7935 6.7497 41 1 9.1655 7.2046 7.1990 42 1 5.4207 7.3138 5.1107 43 1 5.3313 3.1876 1.6232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079361671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = 48.630037 kcal Electronic energy + Delta-G solvation = -29541.972726 eV Core-core repulsion = 25325.339815 eV Total energy + Delta-G solvation = -4216.632912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45626 -41.04887 -39.54700 -38.62435 -37.73291 -37.23513 -36.18871 -34.08178 -33.13529 -32.28760 -31.98667 -30.88082 -29.31794 -27.52862 -27.06459 -24.82334 -24.32103 -23.41436 -22.63986 -21.07903 -20.24808 -19.92948 -18.39357 -18.05242 -17.61794 -17.57819 -17.04164 -17.00980 -16.92440 -16.52442 -16.06221 -15.82743 -15.44901 -15.08142 -14.99694 -14.90793 -14.81432 -14.56339 -14.37731 -14.23666 -13.96959 -13.79808 -13.59153 -13.38466 -13.34560 -13.21017 -13.12157 -12.95189 -12.66106 -12.53510 -12.32589 -12.23647 -12.15209 -12.12783 -11.83900 -11.75834 -11.20498 -10.61957 -10.12796 -9.98017 -9.87456 -9.78086 -9.20349 -8.45332 -6.02901 -0.22748 0.04396 0.30791 0.46339 1.37396 1.44582 1.53117 1.55448 1.77749 1.92802 1.96199 2.20013 2.30273 2.32528 2.80062 2.90957 2.93458 2.98804 3.10946 3.59464 3.72085 3.79861 3.89493 3.97549 4.12365 4.14444 4.21756 4.27651 4.32063 4.38939 4.47905 4.54129 4.58743 4.66683 4.88241 4.93008 4.95048 5.04792 5.23795 5.37713 5.39135 5.41116 5.44440 5.48219 5.50799 5.68685 5.88751 5.97480 6.31823 6.38285 6.46992 6.98707 7.02029 7.23892 7.79581 8.53643 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.001922 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.398252 B =14561.069866 C =15296.876816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.270 3.730 3 C 0.222 3.778 4 N -0.443 5.443 5 C -0.337 4.337 6 H 0.087 0.913 7 C 0.003 3.997 8 N -0.894 5.894 9 Si 0.996 3.004 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.478 3.522 14 O -0.620 6.620 15 C -0.124 4.124 16 C -0.103 4.103 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.100 4.100 20 C 0.103 3.897 21 O -0.328 6.328 22 C 0.118 3.882 23 C -0.172 4.172 24 C -0.072 4.072 25 C -0.103 4.103 26 C -0.004 4.004 27 C 0.280 3.720 28 N -0.464 5.464 29 C -0.120 4.120 30 C -0.060 4.060 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.279 0.721 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.130 0.870 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.346 -0.002 21.780 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.047 4.047 3 C 0.096 3.904 4 N -0.161 5.161 5 C -0.465 4.465 6 H 0.105 0.895 7 C -0.198 4.198 8 N -0.533 5.533 9 Si 0.820 3.180 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.203 1.203 13 C 0.269 3.731 14 O -0.507 6.507 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.100 4.100 20 C 0.029 3.971 21 O -0.242 6.242 22 C 0.073 3.927 23 C -0.191 4.191 24 C -0.089 4.089 25 C -0.124 4.124 26 C -0.008 4.008 27 C -0.035 4.035 28 N -0.140 5.140 29 C -0.141 4.141 30 C -0.079 4.079 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.180 0.820 40 H 0.189 0.811 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.421 2.076 21.605 25.007 hybrid contribution -0.022 -0.395 -1.920 1.960 sum 12.399 1.682 19.685 23.325 Atomic orbital electron populations 1.80900 1.14363 1.10169 1.13766 1.29339 0.95517 0.91085 0.88721 1.19241 0.80701 0.92307 0.98159 1.43753 1.55152 1.10361 1.06820 1.19776 1.37711 1.06837 0.82131 0.89524 1.25980 0.94408 0.95275 1.04135 1.69746 1.28114 1.16005 1.39452 0.84869 0.78325 0.78336 0.76484 1.18136 1.20766 1.20323 1.18753 0.83478 0.82785 0.88059 1.90604 1.55295 1.34169 1.70635 1.19853 0.97380 1.03737 0.91772 1.21554 0.96390 0.98078 0.96241 1.21349 1.00137 0.99881 0.92154 1.21557 0.90909 0.94570 1.01684 1.19553 0.97258 1.01192 0.91966 1.21809 0.96037 0.78314 1.00894 1.86178 1.43935 1.24134 1.69991 1.18860 0.89145 0.91551 0.93136 1.21901 0.93893 1.02324 1.00986 1.21288 0.98799 0.93359 0.95490 1.21386 0.96315 0.94886 0.99774 1.15686 0.97857 0.84022 1.03203 1.25921 0.92370 0.92817 0.92392 1.81284 1.09143 1.13258 1.10304 1.20378 0.99930 0.92632 1.01207 1.21093 0.97062 0.95725 0.94048 0.85035 0.86061 0.91043 0.87606 0.82769 0.81532 0.89320 0.86975 0.82048 0.81143 0.82899 0.85209 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.07 18.54 20.00 0.37 -23.70 16 2 C 0.27 11.88 10.62 89.44 0.95 12.83 16 3 C 0.22 8.86 4.76 84.57 0.40 9.27 16 4 N -0.44 -21.17 2.59 -648.83 -1.68 -22.85 16 5 C -0.34 -17.70 9.46 84.10 0.80 -16.91 16 6 H 0.09 4.91 7.26 -2.91 -0.02 4.89 16 7 C 0.00 0.17 5.16 84.96 0.44 0.60 16 8 N -0.89 -43.34 8.39 21.68 0.18 -43.16 16 9 Si 1.00 39.89 29.58 68.60 2.03 41.92 16 10 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 11 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.48 22.70 7.18 86.75 0.62 23.33 16 14 O -0.62 -34.68 16.64 -4.00 -0.07 -34.74 16 15 C -0.12 -4.49 4.90 -20.09 -0.10 -4.59 16 16 C -0.10 -3.25 7.57 22.54 0.17 -3.08 16 17 C -0.12 -2.59 10.03 22.23 0.22 -2.36 16 18 C -0.07 -1.21 9.69 22.34 0.22 -1.00 16 19 C -0.10 -2.03 5.50 -19.90 -0.11 -2.14 16 20 C 0.10 1.37 4.86 71.24 0.35 1.71 16 21 O -0.33 -6.00 10.12 -92.51 -0.94 -6.94 16 22 C 0.12 1.73 6.68 22.47 0.15 1.88 16 23 C -0.17 -1.40 9.03 22.42 0.20 -1.19 16 24 C -0.07 -0.38 10.02 22.21 0.22 -0.16 16 25 C -0.10 -0.85 9.75 22.55 0.22 -0.63 16 26 C 0.00 -0.06 5.73 -21.37 -0.12 -0.18 16 27 C 0.28 5.25 15.33 88.33 1.35 6.60 16 28 N -0.46 -11.23 18.54 19.00 0.35 -10.88 16 29 C -0.12 -1.92 9.69 22.64 0.22 -1.70 16 30 C -0.06 -1.76 9.38 22.54 0.21 -1.55 16 31 H 0.13 5.33 6.31 -2.39 -0.02 5.31 16 32 H 0.12 3.86 5.52 -2.39 -0.01 3.85 16 33 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 34 H 0.11 3.80 4.81 -2.91 -0.01 3.78 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.09 0.95 7.60 -2.39 -0.02 0.93 16 38 H 0.11 0.66 7.59 -2.39 -0.02 0.64 16 39 H 0.16 0.50 6.28 -2.91 -0.02 0.49 16 40 H 0.17 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -75.06 383.09 7.76 -67.31 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.09 Total: 12.31 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 6.41 Total: 20.74 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -0.78 Total: -100.58 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.00 Total: -41.68 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -75.06 7.76 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.937 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds