Wall clock time and date at job start Tue Mar 31 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47346 * 218.24322 * 3 2 1 5 5 C 1.36879 * 119.99815 * 275.15984 * 4 3 2 6 6 H 1.07998 * 119.99333 * 142.56483 * 5 4 3 7 7 C 1.39047 * 120.00042 * 322.56522 * 5 4 3 8 8 N 1.31359 * 119.99736 * 160.33996 * 7 5 4 9 9 Si 1.86799 * 120.00144 * 340.34280 * 7 5 4 10 10 H 1.48493 * 109.47301 * 95.22580 * 9 7 5 11 11 H 1.48499 * 109.46932 * 215.22959 * 9 7 5 12 12 H 1.48505 * 109.46943 * 335.22303 * 9 7 5 13 13 C 1.34772 * 119.99788 * 95.15517 * 4 3 2 14 14 O 1.21593 * 119.99610 * 185.29747 * 13 4 3 15 15 C 1.47722 * 120.00105 * 5.30445 * 13 4 3 16 16 C 1.39664 * 120.15211 * 313.53969 * 15 13 4 17 17 C 1.37913 * 119.84954 * 180.02562 * 16 15 13 18 18 C 1.38397 * 120.14939 * 0.02562 * 17 16 15 19 19 C 1.38357 * 120.30782 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.92526 * 180.27714 * 19 18 17 21 21 O 1.42897 * 109.47254 * 269.72664 * 20 19 18 22 22 C 1.35756 * 116.99732 * 179.97438 * 21 20 19 23 23 C 1.38963 * 119.90907 * 359.72929 * 22 21 20 24 24 C 1.37731 * 120.09783 * 179.72155 * 23 22 21 25 25 C 1.39759 * 119.90014 * 0.55052 * 24 23 22 26 26 C 1.43201 * 120.09213 * 179.70446 * 25 24 23 27 27 N 9.65038 * 156.30601 * 59.51095 * 18 1 2 28 28 C 1.39757 * 119.81448 * 359.72135 * 25 24 23 29 29 C 1.37727 * 119.90005 * 0.02562 * 28 25 24 30 30 C 1.37957 * 120.14889 * 0.02562 * 19 18 17 31 31 H 1.09000 * 109.46541 * 98.24107 * 3 2 1 32 32 H 1.08996 * 109.47070 * 338.24644 * 3 2 1 33 33 H 0.96997 * 119.99584 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.07369 * 0.04602 * 16 15 13 35 35 H 1.07995 * 119.92480 * 180.02562 * 17 16 15 36 36 H 1.07999 * 119.84746 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.46799 * 29.72946 * 20 19 18 38 38 H 1.09000 * 109.46723 * 149.72479 * 20 19 18 39 39 H 1.07997 * 119.94755 * 359.97326 * 23 22 21 40 40 H 1.07995 * 120.05021 * 180.24972 * 24 23 22 41 41 H 1.07992 * 120.04937 * 179.97438 * 28 25 24 42 42 H 1.08001 * 119.95006 * 179.97438 * 29 28 25 43 43 H 1.07997 * 120.07544 * 179.97438 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 1.0856 0.8549 5 6 3.2230 2.3512 0.3491 6 1 2.9850 3.2054 0.9655 7 6 3.6585 2.5368 -0.9583 8 7 3.4229 3.6730 -1.5739 9 14 4.5784 1.1704 -1.8393 10 1 3.6234 0.3742 -2.6511 11 1 5.6107 1.7618 -2.7281 12 1 5.2326 0.2892 -0.8389 13 6 3.4196 0.8377 2.1395 14 8 3.7321 1.7538 2.8754 15 6 3.3947 -0.5470 2.6535 16 6 2.3057 -1.3775 2.3797 17 6 2.2888 -2.6690 2.8630 18 6 3.3475 -3.1425 3.6183 19 6 4.4295 -2.3253 3.8933 20 6 5.5805 -2.8518 4.7113 21 8 5.3409 -2.5887 6.0953 22 6 6.2890 -3.0026 6.9744 23 6 7.4254 -3.6550 6.5116 24 6 8.3924 -4.0715 7.3995 25 6 8.2240 -3.8475 8.7687 26 6 9.2239 -4.2845 9.6961 27 7 10.0208 -4.6311 10.4286 28 6 7.0769 -3.1961 9.2304 29 6 6.1174 -2.7782 8.3350 30 6 4.4594 -1.0313 3.4161 31 1 2.9712 0.1481 -1.0171 32 1 2.9718 -0.9536 0.3809 33 1 3.7263 3.8024 -2.4861 34 1 1.4789 -1.0092 1.7905 35 1 1.4475 -3.3124 2.6517 36 1 3.3289 -4.1546 3.9947 37 1 5.6744 -3.9267 4.5567 38 1 6.5018 -2.3583 4.4018 39 1 7.5524 -3.8319 5.4539 40 1 9.2772 -4.5748 7.0387 41 1 6.9427 -3.0214 10.2876 42 1 5.2305 -2.2752 8.6909 43 1 5.3044 -0.3943 3.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079361674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:58 Heat of formation + Delta-G solvation = 71.892477 kcal Electronic energy + Delta-G solvation = -29528.072751 eV Core-core repulsion = 25312.448574 eV Total energy + Delta-G solvation = -4215.624177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.77334 -40.07960 -38.63954 -37.84122 -36.47822 -36.42311 -34.84434 -32.86073 -32.19025 -31.61882 -31.02455 -30.59874 -28.03896 -26.91578 -25.67603 -23.78689 -23.35087 -22.94925 -21.66819 -19.58841 -19.31355 -18.73438 -18.56281 -17.13459 -16.91266 -16.40924 -16.36814 -16.20696 -15.70085 -15.18830 -14.96642 -14.71815 -14.43622 -14.28435 -14.19173 -14.01969 -13.85845 -13.70474 -13.58526 -13.04289 -12.99537 -12.80892 -12.69102 -12.64920 -12.52962 -12.44959 -12.35721 -12.10968 -11.75428 -11.53882 -11.40639 -11.24465 -11.10418 -11.01917 -10.57746 -10.12288 -9.61338 -9.44864 -9.02150 -8.98319 -8.77010 -8.67542 -8.22122 -6.62516 -4.24492 0.41347 0.81433 0.95314 1.22057 2.32708 2.55932 2.73660 2.79250 2.91657 2.96915 3.02539 3.12573 3.37744 3.44671 3.55257 3.79164 3.89563 4.12415 4.22743 4.30867 4.35673 4.50211 4.57084 4.62707 4.79035 4.84425 4.93269 4.98077 5.01128 5.07878 5.13590 5.25902 5.34153 5.44662 5.45566 5.55607 5.56007 5.75754 5.79921 5.84667 5.92915 6.10907 6.29075 6.34258 6.42356 6.80366 6.92292 7.15422 7.23192 7.82388 7.96788 8.17842 8.64340 8.98920 9.36251 10.48338 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.001986 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.004407 B =14095.624734 C =14806.887054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.206 3.794 3 C 0.173 3.827 4 N -0.451 5.451 5 C -0.325 4.325 6 H 0.115 0.885 7 C 0.064 3.936 8 N -0.848 5.848 9 Si 0.862 3.138 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.254 1.254 13 C 0.510 3.490 14 O -0.537 6.537 15 C -0.107 4.107 16 C -0.097 4.097 17 C -0.124 4.124 18 C -0.087 4.087 19 C -0.107 4.107 20 C 0.103 3.897 21 O -0.299 6.299 22 C 0.168 3.832 23 C -0.215 4.215 24 C -0.026 4.026 25 C -0.079 4.079 26 C 0.261 3.739 27 N -0.428 5.428 28 C -0.028 4.028 29 C -0.154 4.154 30 C -0.047 4.047 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.279 0.721 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -19.246 10.563 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.113 4.113 3 C 0.046 3.954 4 N -0.173 5.173 5 C -0.452 4.452 6 H 0.132 0.868 7 C -0.145 4.145 8 N -0.482 5.482 9 Si 0.688 3.312 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.178 1.178 13 C 0.299 3.701 14 O -0.417 6.417 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.142 4.142 18 C -0.105 4.105 19 C -0.108 4.108 20 C 0.028 3.972 21 O -0.211 6.211 22 C 0.121 3.879 23 C -0.233 4.233 24 C -0.046 4.046 25 C -0.083 4.083 26 C -0.054 4.054 27 N -0.104 5.104 28 C -0.049 4.049 29 C -0.173 4.173 30 C -0.066 4.066 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.875 -19.009 11.904 23.185 hybrid contribution 0.629 -0.449 -1.260 1.478 sum 6.504 -19.457 10.644 23.112 Atomic orbital electron populations 1.81096 1.12891 1.08487 1.08527 1.29775 0.95676 0.92821 0.93013 1.19699 0.81412 0.94830 0.99461 1.43501 1.56265 1.08515 1.08980 1.19109 1.45678 0.82210 0.98187 0.86800 1.25398 0.95756 0.96868 0.96431 1.69684 1.40785 1.25178 1.12529 0.87155 0.81032 0.82544 0.80440 1.19469 1.20378 1.17782 1.18152 0.81314 0.87355 0.83271 1.90710 1.49962 1.45325 1.55679 1.20322 0.95665 0.95392 0.99705 1.21707 0.97567 0.93800 0.98540 1.21046 0.98767 0.95693 0.98656 1.21089 0.92697 0.99543 0.97204 1.19256 0.96311 0.94779 1.00421 1.21709 0.97125 1.00569 0.77750 1.86220 1.42791 1.75158 1.16972 1.19363 0.87539 0.90863 0.90165 1.21240 0.95363 1.05615 1.01120 1.20945 0.98011 0.95021 0.90643 1.15904 0.93733 1.08073 0.90572 1.25695 0.93089 0.93329 0.93305 1.81295 1.10050 1.09708 1.09349 1.20972 0.90681 0.93124 1.00086 1.20417 1.01762 1.05398 0.89700 1.21057 0.97887 0.93855 0.93849 0.87792 0.86486 0.91027 0.85563 0.85349 0.85689 0.90514 0.90333 0.84178 0.84720 0.84311 0.83871 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.47 18.54 42.16 0.78 -7.69 16 2 C 0.21 3.82 13.08 -20.76 -0.27 3.55 16 3 C 0.17 3.08 4.38 -6.83 -0.03 3.05 16 4 N -0.45 -9.89 2.16 -119.06 -0.26 -10.14 16 5 C -0.33 -8.43 9.37 -15.00 -0.14 -8.57 16 6 H 0.11 3.38 7.86 -52.49 -0.41 2.97 16 7 C 0.06 1.60 5.37 -17.45 -0.09 1.51 16 8 N -0.85 -22.74 13.95 55.50 0.77 -21.97 16 9 Si 0.86 17.57 24.85 -169.99 -4.22 13.35 16 10 H -0.27 -4.99 6.73 56.52 0.38 -4.61 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 13 C 0.51 10.93 7.21 -12.39 -0.09 10.84 16 14 O -0.54 -13.57 16.85 5.28 0.09 -13.48 16 15 C -0.11 -1.76 5.02 -104.97 -0.53 -2.29 16 16 C -0.10 -1.37 7.48 -39.17 -0.29 -1.66 16 17 C -0.12 -1.34 10.03 -39.64 -0.40 -1.74 16 18 C -0.09 -0.84 9.69 -39.48 -0.38 -1.22 16 19 C -0.11 -1.15 5.50 -104.68 -0.58 -1.72 16 20 C 0.10 0.80 4.85 36.01 0.17 0.98 16 21 O -0.30 -2.81 10.11 -18.98 -0.19 -3.00 16 22 C 0.17 1.30 6.69 -39.04 -0.26 1.04 16 23 C -0.21 -1.30 9.01 -39.50 -0.36 -1.66 16 24 C -0.03 -0.15 9.75 -39.20 -0.38 -0.53 16 25 C -0.08 -0.53 5.74 -106.83 -0.61 -1.15 16 26 C 0.26 2.27 15.33 -22.45 -0.34 1.92 16 27 N -0.43 -4.80 18.54 41.86 0.78 -4.03 16 28 C -0.03 -0.17 9.75 -39.20 -0.38 -0.55 16 29 C -0.15 -1.06 9.97 -39.50 -0.39 -1.45 16 30 C -0.05 -0.66 9.35 -39.17 -0.37 -1.03 16 31 H 0.10 1.89 2.82 -51.93 -0.15 1.74 16 32 H 0.12 1.65 5.34 -51.93 -0.28 1.37 16 33 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.13 1.89 4.51 -52.48 -0.24 1.66 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.08 0.41 7.58 -51.93 -0.39 0.01 16 38 H 0.08 0.53 7.61 -51.93 -0.40 0.13 16 39 H 0.14 0.60 6.27 -52.49 -0.33 0.27 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -32.26 382.17 -6.10 -38.36 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.88 Total: 3.51 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -5.73 Total: -0.68 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 2.07 Total: -43.83 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.10 Total: -16.48 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -4.22 Total: 13.35 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.26 -6.10 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.257 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds