Wall clock time and date at job start Tue Mar 31 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47346 * 218.24322 * 3 2 1 5 5 C 1.36879 * 119.99815 * 275.15984 * 4 3 2 6 6 H 1.07998 * 119.99333 * 142.56483 * 5 4 3 7 7 C 1.39047 * 120.00042 * 322.56522 * 5 4 3 8 8 N 1.31359 * 119.99736 * 160.33996 * 7 5 4 9 9 Si 1.86799 * 120.00144 * 340.34280 * 7 5 4 10 10 H 1.48493 * 109.47301 * 95.22580 * 9 7 5 11 11 H 1.48499 * 109.46932 * 215.22959 * 9 7 5 12 12 H 1.48505 * 109.46943 * 335.22303 * 9 7 5 13 13 C 1.34772 * 119.99788 * 95.15517 * 4 3 2 14 14 O 1.21593 * 119.99610 * 185.29747 * 13 4 3 15 15 C 1.47722 * 120.00105 * 5.30445 * 13 4 3 16 16 C 1.39664 * 120.15211 * 313.53969 * 15 13 4 17 17 C 1.37913 * 119.84954 * 180.02562 * 16 15 13 18 18 C 1.38397 * 120.14939 * 0.02562 * 17 16 15 19 19 C 1.38357 * 120.30782 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.92526 * 180.27714 * 19 18 17 21 21 O 1.42897 * 109.47254 * 269.72664 * 20 19 18 22 22 C 1.35756 * 116.99732 * 179.97438 * 21 20 19 23 23 C 1.38963 * 119.90907 * 359.72929 * 22 21 20 24 24 C 1.37731 * 120.09783 * 179.72155 * 23 22 21 25 25 C 1.39759 * 119.90014 * 0.55052 * 24 23 22 26 26 C 1.43201 * 120.09213 * 179.70446 * 25 24 23 27 27 N 9.65038 * 156.30601 * 59.51095 * 18 1 2 28 28 C 1.39757 * 119.81448 * 359.72135 * 25 24 23 29 29 C 1.37727 * 119.90005 * 0.02562 * 28 25 24 30 30 C 1.37957 * 120.14889 * 0.02562 * 19 18 17 31 31 H 1.09000 * 109.46541 * 98.24107 * 3 2 1 32 32 H 1.08996 * 109.47070 * 338.24644 * 3 2 1 33 33 H 0.96997 * 119.99584 * 180.02562 * 8 7 5 34 34 H 1.08005 * 120.07369 * 0.04602 * 16 15 13 35 35 H 1.07995 * 119.92480 * 180.02562 * 17 16 15 36 36 H 1.07999 * 119.84746 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.46799 * 29.72946 * 20 19 18 38 38 H 1.09000 * 109.46723 * 149.72479 * 20 19 18 39 39 H 1.07997 * 119.94755 * 359.97326 * 23 22 21 40 40 H 1.07995 * 120.05021 * 180.24972 * 24 23 22 41 41 H 1.07992 * 120.04937 * 179.97438 * 28 25 24 42 42 H 1.08001 * 119.95006 * 179.97438 * 29 28 25 43 43 H 1.07997 * 120.07544 * 179.97438 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0960 1.0856 0.8549 5 6 3.2230 2.3512 0.3491 6 1 2.9850 3.2054 0.9655 7 6 3.6585 2.5368 -0.9583 8 7 3.4229 3.6730 -1.5739 9 14 4.5784 1.1704 -1.8393 10 1 3.6234 0.3742 -2.6511 11 1 5.6107 1.7618 -2.7281 12 1 5.2326 0.2892 -0.8389 13 6 3.4196 0.8377 2.1395 14 8 3.7321 1.7538 2.8754 15 6 3.3947 -0.5470 2.6535 16 6 2.3057 -1.3775 2.3797 17 6 2.2888 -2.6690 2.8630 18 6 3.3475 -3.1425 3.6183 19 6 4.4295 -2.3253 3.8933 20 6 5.5805 -2.8518 4.7113 21 8 5.3409 -2.5887 6.0953 22 6 6.2890 -3.0026 6.9744 23 6 7.4254 -3.6550 6.5116 24 6 8.3924 -4.0715 7.3995 25 6 8.2240 -3.8475 8.7687 26 6 9.2239 -4.2845 9.6961 27 7 10.0208 -4.6311 10.4286 28 6 7.0769 -3.1961 9.2304 29 6 6.1174 -2.7782 8.3350 30 6 4.4594 -1.0313 3.4161 31 1 2.9712 0.1481 -1.0171 32 1 2.9718 -0.9536 0.3809 33 1 3.7263 3.8024 -2.4861 34 1 1.4789 -1.0092 1.7905 35 1 1.4475 -3.3124 2.6517 36 1 3.3289 -4.1546 3.9947 37 1 5.6744 -3.9267 4.5567 38 1 6.5018 -2.3583 4.4018 39 1 7.5524 -3.8319 5.4539 40 1 9.2772 -4.5748 7.0387 41 1 6.9427 -3.0214 10.2876 42 1 5.2305 -2.2752 8.6909 43 1 5.3044 -0.3943 3.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079361674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:57 Heat of formation + Delta-G solvation = 52.676126 kcal Electronic energy + Delta-G solvation = -29528.906034 eV Core-core repulsion = 25312.448574 eV Total energy + Delta-G solvation = -4216.457460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60910 -41.14231 -39.61292 -38.67489 -38.09555 -37.11973 -36.55407 -34.39055 -33.34862 -32.12181 -32.07252 -31.18833 -29.58486 -27.79532 -27.22100 -24.35214 -24.27926 -23.85080 -22.53069 -21.00100 -20.40755 -19.85636 -19.11387 -18.50948 -18.28484 -17.77257 -17.21193 -17.01326 -16.97143 -16.04030 -16.01936 -15.64825 -15.46308 -15.24485 -15.08866 -14.97018 -14.88971 -14.61494 -14.46554 -14.45279 -14.36286 -14.09543 -13.78038 -13.71641 -13.60798 -13.40531 -13.21860 -13.15618 -13.03446 -12.76194 -12.55416 -12.27268 -12.10544 -11.81305 -11.77694 -11.72081 -11.18494 -10.66612 -10.10333 -10.04580 -9.91269 -9.86032 -9.20771 -8.54653 -6.25867 -0.11127 -0.03230 0.26131 0.38415 1.19475 1.32914 1.38125 1.45504 1.61035 1.66418 1.76157 1.96417 2.16349 2.22451 2.58855 2.74255 2.88928 2.92609 2.97308 3.08374 3.60557 3.64654 3.85103 3.90735 3.93435 3.98065 4.07142 4.12246 4.19004 4.24007 4.33920 4.41763 4.54603 4.62487 4.65366 4.82731 5.01258 5.04695 5.09356 5.28574 5.32698 5.39094 5.41410 5.43786 5.49283 5.65607 5.90890 5.96752 6.31617 6.39132 6.40127 6.51550 6.76661 7.07595 7.59705 8.61541 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.001986 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.004407 B =14095.624734 C =14806.887054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.218 3.782 3 C 0.176 3.824 4 N -0.462 5.462 5 C -0.347 4.347 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.902 5.902 9 Si 0.928 3.072 10 H -0.228 1.228 11 H -0.281 1.281 12 H -0.229 1.229 13 C 0.510 3.490 14 O -0.594 6.594 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.113 4.113 18 C -0.065 4.065 19 C -0.098 4.098 20 C 0.098 3.902 21 O -0.320 6.320 22 C 0.157 3.843 23 C -0.211 4.211 24 C -0.021 4.021 25 C -0.090 4.090 26 C 0.285 3.715 27 N -0.479 5.479 28 C -0.023 4.023 29 C -0.165 4.165 30 C -0.057 4.057 31 H 0.109 0.891 32 H 0.163 0.837 33 H 0.284 0.716 34 H 0.113 0.887 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.163 0.837 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -24.689 10.194 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.101 4.101 3 C 0.050 3.950 4 N -0.183 5.183 5 C -0.474 4.474 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.538 5.538 9 Si 0.748 3.252 10 H -0.153 1.153 11 H -0.207 1.207 12 H -0.151 1.151 13 C 0.301 3.699 14 O -0.477 6.477 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.130 4.130 18 C -0.083 4.083 19 C -0.099 4.099 20 C 0.024 3.976 21 O -0.233 6.233 22 C 0.109 3.891 23 C -0.229 4.229 24 C -0.041 4.041 25 C -0.094 4.094 26 C -0.029 4.029 27 N -0.155 5.155 28 C -0.043 4.043 29 C -0.184 4.184 30 C -0.076 4.076 31 H 0.126 0.874 32 H 0.180 0.820 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.181 0.819 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.645 -24.481 11.538 27.867 hybrid contribution 0.315 1.260 -0.961 1.616 sum 6.961 -23.221 10.577 26.448 Atomic orbital electron populations 1.81097 1.13550 1.09235 1.09283 1.29869 0.95767 0.92125 0.92315 1.19960 0.80750 0.95227 0.99022 1.43475 1.56978 1.08098 1.09739 1.18609 1.47775 0.82791 0.98246 0.93397 1.26291 0.95702 1.00211 0.96794 1.69821 1.42289 1.28282 1.13386 0.86119 0.79883 0.79449 0.79712 1.15340 1.20694 1.15120 1.19057 0.79067 0.89254 0.82484 1.90657 1.52008 1.47887 1.57099 1.19878 0.98409 0.92660 1.02898 1.21619 0.96324 0.95040 0.99420 1.21397 1.00041 0.94243 0.97346 1.21614 0.90922 1.01012 0.94705 1.19533 0.97583 0.93168 0.99567 1.21879 0.96075 1.02746 0.76852 1.86165 1.43654 1.75856 1.17629 1.19549 0.87952 0.91437 0.90124 1.21447 0.94467 1.04737 1.02264 1.21180 0.98559 0.94350 0.90017 1.16015 0.93571 1.08943 0.90829 1.25936 0.92413 0.92002 0.92513 1.81319 1.11708 1.11640 1.10860 1.21112 0.90075 0.92307 1.00852 1.20544 1.02165 1.05767 0.89878 1.21089 0.97048 0.95499 0.93994 0.87426 0.81972 0.90582 0.86884 0.82108 0.81341 0.86767 0.89389 0.81915 0.82798 0.82862 0.83636 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.62 18.54 20.01 0.37 -17.25 16 2 C 0.22 7.92 13.08 89.44 1.17 9.09 16 3 C 0.18 6.04 4.38 84.57 0.37 6.41 16 4 N -0.46 -20.91 2.16 -648.85 -1.40 -22.31 16 5 C -0.35 -19.30 9.37 84.10 0.79 -18.51 16 6 H 0.05 3.20 7.86 -2.91 -0.02 3.18 16 7 C 0.01 0.72 5.37 84.96 0.46 1.18 16 8 N -0.90 -51.12 13.95 21.68 0.30 -50.81 16 9 Si 0.93 35.44 24.85 68.60 1.70 37.14 16 10 H -0.23 -7.34 6.73 99.48 0.67 -6.67 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.23 -7.77 7.11 99.48 0.71 -7.06 16 13 C 0.51 22.83 7.21 86.75 0.63 23.45 16 14 O -0.59 -32.37 16.85 -4.01 -0.07 -32.44 16 15 C -0.14 -4.34 5.02 -20.09 -0.10 -4.45 16 16 C -0.10 -2.70 7.48 22.54 0.17 -2.53 16 17 C -0.11 -1.88 10.03 22.23 0.22 -1.65 16 18 C -0.06 -0.86 9.69 22.34 0.22 -0.65 16 19 C -0.10 -1.69 5.50 -19.90 -0.11 -1.80 16 20 C 0.10 1.08 4.85 71.24 0.35 1.42 16 21 O -0.32 -4.91 10.11 -90.82 -0.92 -5.83 16 22 C 0.16 1.94 6.69 22.62 0.15 2.09 16 23 C -0.21 -1.73 9.01 22.32 0.20 -1.53 16 24 C -0.02 -0.17 9.75 22.52 0.22 0.05 16 25 C -0.09 -1.01 5.74 -21.30 -0.12 -1.13 16 26 C 0.29 4.58 15.33 88.33 1.35 5.93 16 27 N -0.48 -10.46 18.54 19.01 0.35 -10.10 16 28 C -0.02 -0.23 9.75 22.52 0.22 -0.01 16 29 C -0.16 -1.91 9.97 22.32 0.22 -1.69 16 30 C -0.06 -1.50 9.35 22.54 0.21 -1.29 16 31 H 0.11 3.63 2.82 -2.39 -0.01 3.62 16 32 H 0.16 4.07 5.34 -2.39 -0.01 4.06 16 33 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.11 3.21 4.51 -2.91 -0.01 3.19 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.11 0.44 7.58 -2.38 -0.02 0.42 16 38 H 0.09 0.81 7.61 -2.39 -0.02 0.79 16 39 H 0.16 0.54 6.27 -2.91 -0.02 0.53 16 40 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 41 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -80.38 382.17 8.02 -72.37 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.06 Total: 14.84 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.61 Total: 14.39 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -0.38 Total: -100.47 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.99 Total: -38.26 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 1.70 Total: 37.14 kcal Total: -80.38 8.02 -72.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079361674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.042 kcal (2) G-P(sol) polarization free energy of solvation -80.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds