Wall clock time and date at job start Tue Mar 31 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47237 * 2 1 4 4 C 1.53003 * 109.47417 * 239.99997 * 2 1 3 5 5 O 1.42902 * 109.47417 * 119.99955 * 2 1 3 6 6 C 1.35712 * 117.00077 * 72.39861 * 5 2 1 7 7 C 1.38992 * 119.91112 * 323.90346 * 6 5 2 8 8 C 1.37703 * 120.08825 * 180.25410 * 7 6 5 9 9 C 1.39734 * 119.91015 * 359.45276 * 8 7 6 10 10 C 1.47599 * 120.08934 * 180.29460 * 9 8 7 11 11 O 1.21587 * 120.00125 * 330.72375 * 10 9 8 12 12 N 1.34774 * 120.00293 * 150.71617 * 10 9 8 13 13 C 1.46504 * 120.00248 * 218.43730 * 12 10 9 14 14 C 1.50699 * 109.47546 * 89.99788 * 13 12 10 15 15 H 1.08003 * 119.99630 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00311 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99767 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47154 * 60.00222 * 18 16 14 20 20 H 1.48504 * 109.47029 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47296 * 299.99697 * 18 16 14 22 22 C 1.46504 * 119.99924 * 38.42890 * 12 10 9 23 23 C 1.53175 * 109.54056 * 37.23673 * 22 12 10 24 24 C 1.53092 * 109.16637 * 183.15065 * 23 22 12 25 25 O 1.42908 * 109.41173 * 57.60951 * 24 23 22 26 26 C 1.42905 * 114.09776 * 298.84133 * 25 24 23 27 27 C 1.53099 * 109.41275 * 61.15859 * 26 25 24 28 28 C 1.39738 * 119.82227 * 0.27310 * 9 8 7 29 29 C 1.37698 * 119.91084 * 0.02562 * 28 9 8 30 30 H 1.08995 * 109.47296 * 344.02138 * 1 2 3 31 31 H 1.09003 * 109.47253 * 104.02635 * 1 2 3 32 32 H 1.09003 * 109.46693 * 224.01971 * 1 2 3 33 33 H 1.08994 * 109.47664 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.47142 * 300.00415 * 3 2 1 35 35 H 1.09004 * 109.47298 * 59.99676 * 3 2 1 36 36 H 1.09005 * 109.47042 * 298.35366 * 4 2 1 37 37 H 1.08999 * 109.47212 * 58.35566 * 4 2 1 38 38 H 1.08996 * 109.47320 * 178.35510 * 4 2 1 39 39 H 1.08008 * 119.95692 * 0.02562 * 7 6 5 40 40 H 1.08005 * 120.04639 * 179.72520 * 8 7 6 41 41 H 1.09000 * 109.46756 * 209.99382 * 13 12 10 42 42 H 1.09001 * 109.46926 * 329.99219 * 13 12 10 43 43 H 0.96996 * 120.00473 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.54002 * 157.50364 * 22 12 10 45 45 H 1.09002 * 109.52665 * 303.05715 * 23 22 12 46 46 H 1.09000 * 109.52340 * 63.24219 * 23 22 12 47 47 H 1.09002 * 109.48196 * 297.63129 * 24 23 22 48 48 H 1.08991 * 109.48385 * 177.58971 * 24 23 22 49 49 H 1.09002 * 109.48169 * 301.18356 * 26 25 24 50 50 H 1.08996 * 109.49125 * 181.14933 * 26 25 24 51 51 H 1.08994 * 109.52034 * 182.48466 * 27 26 25 52 52 H 1.09003 * 109.52074 * 62.30052 * 27 26 25 53 53 H 1.08000 * 120.04235 * 180.02562 * 28 9 8 54 54 H 1.08004 * 119.95379 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.8670 -2.0232 1.1991 7 6 0.7428 -2.6176 0.6380 8 6 0.5952 -3.9862 0.6735 9 6 1.5830 -4.7785 1.2644 10 6 1.4319 -6.2463 1.2987 11 8 0.3224 -6.7427 1.3293 12 7 2.5238 -7.0364 1.2961 13 6 2.5207 -8.2877 0.5341 14 6 3.0171 -8.0255 -0.8644 15 1 3.3056 -7.0266 -1.1566 16 6 3.1020 -9.0606 -1.7713 17 7 2.7502 -10.2769 -1.4156 18 14 3.7166 -8.7354 -3.5050 19 1 5.0986 -8.1951 -3.4470 20 1 3.7136 -10.0038 -4.2773 21 1 2.8269 -7.7490 -4.1688 22 6 3.7138 -6.6439 2.0551 23 6 3.2881 -5.9759 3.3661 24 6 4.5351 -5.4989 4.1152 25 8 5.2747 -4.6022 3.2839 26 6 5.7396 -5.1859 2.0651 27 6 4.5409 -5.6503 1.2336 28 6 2.7145 -4.1774 1.8223 29 6 2.8516 -2.8077 1.7882 30 1 -0.3633 0.9879 0.2829 31 1 -0.3634 -0.2491 -0.9970 32 1 -0.3633 -0.7390 0.7142 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.7010 -1.7571 -1.2346 37 1 1.6529 -0.2248 -2.1390 38 1 3.1296 -0.6958 -1.2641 39 1 -0.0178 -2.0049 0.1769 40 1 -0.2807 -4.4470 0.2412 41 1 3.1738 -9.0115 1.0216 42 1 1.5064 -8.6845 0.4913 43 1 2.8102 -11.0052 -2.0534 44 1 4.3150 -7.5267 2.2726 45 1 2.6455 -5.1228 3.1483 46 1 2.7458 -6.6938 3.9814 47 1 5.1576 -6.3571 4.3682 48 1 4.2360 -4.9847 5.0285 49 1 6.3778 -6.0401 2.2913 50 1 6.3083 -4.4463 1.5015 51 1 4.8947 -6.1353 0.3239 52 1 3.9236 -4.7906 0.9727 53 1 3.4803 -4.7864 2.2795 54 1 3.7260 -2.3424 2.2189 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079545968.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:26 Heat of formation + Delta-G solvation = 1.679555 kcal Electronic energy + Delta-G solvation = -35311.729245 eV Core-core repulsion = 31025.124926 eV Total energy + Delta-G solvation = -4286.604319 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.17716 -41.33079 -39.93289 -38.40489 -37.05782 -35.25807 -34.94121 -33.45507 -32.20502 -31.73353 -31.28626 -29.22841 -28.46282 -28.23930 -25.77182 -25.51177 -24.63421 -24.43983 -23.54395 -22.04131 -21.34476 -19.85041 -18.76784 -18.58101 -18.19570 -17.54132 -17.25701 -17.04708 -16.77685 -16.65604 -16.34587 -16.07843 -15.72982 -15.63670 -15.28211 -15.05273 -14.87992 -14.81859 -14.58624 -14.43850 -14.10417 -13.78440 -13.55644 -13.45973 -13.29377 -13.26378 -13.15488 -12.99038 -12.92208 -12.77066 -12.63066 -12.60920 -12.32897 -12.22534 -12.11989 -11.98667 -11.67009 -11.59328 -11.53697 -11.33792 -10.91732 -10.84465 -10.64839 -10.20499 -9.72360 -9.47181 -9.12527 -8.23632 -6.40589 -0.14720 0.30912 1.35632 1.38896 1.46416 1.58266 2.13590 2.32090 2.39716 2.76192 2.87845 3.04817 3.46461 3.59291 3.67468 3.73857 3.81417 3.85518 3.88438 3.92546 3.98459 4.03007 4.21632 4.27391 4.33375 4.42895 4.52737 4.56416 4.61926 4.65397 4.70914 4.72234 4.80352 4.83581 4.84421 4.89546 4.92356 4.95821 4.98200 5.05664 5.08937 5.13370 5.15819 5.21687 5.24607 5.28393 5.32424 5.38537 5.47186 5.58483 5.67960 5.87935 6.03269 6.19436 6.49089 6.64667 6.69538 7.09302 7.32303 8.82426 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.008921 B = 0.003781 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.756178 B = 7404.545259 C = 8713.238981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.102 3.898 3 C -0.135 4.135 4 C -0.188 4.188 5 O -0.320 6.320 6 C 0.155 3.845 7 C -0.219 4.219 8 C -0.046 4.046 9 C -0.201 4.201 10 C 0.574 3.426 11 O -0.580 6.580 12 N -0.623 5.623 13 C 0.268 3.732 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.276 1.276 22 C 0.144 3.856 23 C -0.235 4.235 24 C 0.068 3.932 25 O -0.383 6.383 26 C 0.066 3.934 27 C -0.222 4.222 28 C -0.109 4.109 29 C -0.166 4.166 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.169 0.831 40 H 0.118 0.882 41 H 0.020 0.980 42 H -0.005 1.005 43 H 0.268 0.732 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.126 0.874 49 H 0.069 0.931 50 H 0.120 0.880 51 H 0.074 0.926 52 H 0.112 0.888 53 H 0.235 0.765 54 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 23.038 6.455 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.066 3.934 3 C -0.192 4.192 4 C -0.245 4.245 5 O -0.236 6.236 6 C 0.109 3.891 7 C -0.237 4.237 8 C -0.066 4.066 9 C -0.204 4.204 10 C 0.366 3.634 11 O -0.461 6.461 12 N -0.355 5.355 13 C 0.147 3.853 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.201 1.201 22 C 0.041 3.959 23 C -0.272 4.272 24 C -0.009 4.009 25 O -0.302 6.302 26 C -0.011 4.011 27 C -0.259 4.259 28 C -0.125 4.125 29 C -0.184 4.184 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.186 0.814 40 H 0.136 0.864 41 H 0.038 0.962 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.137 0.863 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.144 0.856 49 H 0.087 0.913 50 H 0.138 0.862 51 H 0.092 0.908 52 H 0.129 0.871 53 H 0.250 0.750 54 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.320 22.874 6.589 24.193 hybrid contribution -0.545 -1.432 -1.445 2.106 sum 3.775 21.442 5.144 22.371 Atomic orbital electron populations 1.22965 0.94253 1.04282 1.03832 1.22127 0.94507 0.93763 0.83041 1.21885 1.02195 0.91073 1.04018 1.22672 1.02397 1.01200 0.98252 1.86082 1.80531 1.15426 1.41549 1.19171 0.92327 0.83282 0.94274 1.22070 1.00101 0.94581 1.06918 1.21094 0.96670 0.93651 0.95151 1.20105 0.99231 0.92267 1.08803 1.18650 0.83674 0.87548 0.73573 1.90634 1.27967 1.77783 1.49703 1.47769 1.13548 1.23490 1.50663 1.18794 0.95539 0.80818 0.90147 1.21716 1.44371 0.95103 0.97036 0.92179 1.25858 0.95289 0.94568 1.03144 1.70057 1.48424 1.00958 1.37248 0.85496 0.79386 0.77563 0.78593 1.18289 1.20508 1.20126 1.21263 0.86107 0.98256 0.90307 1.24008 1.02743 1.03850 0.96625 1.22708 0.89790 0.94982 0.93431 1.87941 1.71929 1.38634 1.31685 1.22720 0.93816 1.00021 0.84589 1.23893 0.99622 1.01417 1.00952 1.24116 0.96944 0.96617 0.94774 1.20885 0.99631 0.92093 1.05773 0.89785 0.90096 0.91049 0.91677 0.88437 0.91142 0.92804 0.88935 0.91824 0.81376 0.86369 0.96175 0.98683 0.92343 0.89018 0.86314 0.90185 0.90852 0.85646 0.91254 0.86243 0.90776 0.87076 0.75026 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 8.00 71.98 0.58 -2.31 16 2 C 0.10 1.74 1.11 -10.79 -0.01 1.73 16 3 C -0.13 -1.61 8.57 71.98 0.62 -1.00 16 4 C -0.19 -3.35 7.88 71.98 0.57 -2.79 16 5 O -0.32 -7.35 9.73 -90.33 -0.88 -8.23 16 6 C 0.16 4.09 5.43 22.63 0.12 4.22 16 7 C -0.22 -6.04 6.72 22.32 0.15 -5.89 16 8 C -0.05 -1.62 9.59 22.50 0.22 -1.41 16 9 C -0.20 -7.63 5.43 -20.08 -0.11 -7.74 16 10 C 0.57 26.91 6.15 86.71 0.53 27.44 16 11 O -0.58 -31.75 16.67 -3.99 -0.07 -31.82 16 12 N -0.62 -28.36 2.41 -805.14 -1.94 -30.30 16 13 C 0.27 14.78 5.40 85.63 0.46 15.24 16 14 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 15 H 0.06 3.33 7.62 -2.91 -0.02 3.31 16 16 C 0.01 0.61 5.46 84.65 0.46 1.07 16 17 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 18 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.14 4.94 2.60 45.11 0.12 5.06 16 23 C -0.24 -6.52 4.54 30.68 0.14 -6.39 16 24 C 0.07 1.34 6.81 72.01 0.49 1.83 16 25 O -0.38 -8.18 10.05 -148.98 -1.50 -9.67 16 26 C 0.07 1.42 6.83 72.02 0.49 1.91 16 27 C -0.22 -6.71 5.12 30.69 0.16 -6.55 16 28 C -0.11 -3.35 3.66 22.50 0.08 -3.27 16 29 C -0.17 -4.46 9.95 22.32 0.22 -4.24 16 30 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 31 H 0.08 1.02 7.65 -2.39 -0.02 1.00 16 32 H 0.07 1.26 5.21 -2.39 -0.01 1.25 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 1.20 5.71 -2.38 -0.01 1.18 16 37 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.17 3.78 4.11 -2.91 -0.01 3.77 16 40 H 0.12 4.31 7.91 -2.91 -0.02 4.28 16 41 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 42 H 0.00 -0.32 7.44 -2.39 -0.02 -0.33 16 43 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.09 3.11 7.82 -2.39 -0.02 3.09 16 45 H 0.12 3.57 3.24 -41.04 -0.13 3.44 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.13 1.87 8.14 -2.39 -0.02 1.86 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16 52 H 0.11 3.54 3.43 -47.93 -0.16 3.38 16 53 H 0.23 6.62 0.10 -57.87 -0.01 6.61 16 54 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -74.20 403.11 4.09 -70.11 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.64 Total: 33.10 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.53 Total: -13.67 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.66 Total: -85.79 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.44 Total: -49.72 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -74.20 4.09 -70.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079545968.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.792 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds