Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00317 * 2 1 4 4 H 1.48499 * 109.46945 * 269.99934 * 3 2 1 5 5 H 1.48503 * 109.46788 * 29.99919 * 3 2 1 6 6 H 1.48495 * 109.47246 * 149.99963 * 3 2 1 7 7 C 1.37886 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99869 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00231 * 89.99819 * 10 9 7 12 12 O 1.21276 * 120.00497 * 185.01995 * 11 10 9 13 13 C 1.50705 * 119.99748 * 5.01960 * 11 10 9 14 14 H 1.09002 * 109.30691 * 335.02933 * 13 11 10 15 15 S 1.81329 * 109.15453 * 94.54255 * 13 11 10 16 16 C 1.82065 * 100.84597 * 166.11585 * 15 13 11 17 17 C 1.52150 * 107.72781 * 295.94710 * 16 15 13 18 18 C 1.50227 * 113.57593 * 52.93120 * 17 16 15 19 19 C 1.39955 * 114.46808 * 159.55902 * 18 17 16 20 20 C 1.37457 * 121.52121 * 178.85225 * 19 18 17 21 21 C 1.38291 * 119.51144 * 359.88864 * 20 19 18 22 22 C 1.37574 * 119.25776 * 0.85337 * 21 20 19 23 23 C 1.36941 * 126.73482 * 339.06474 * 18 17 16 24 24 C 1.46504 * 119.99710 * 270.00246 * 10 9 7 25 25 C 1.53178 * 109.53956 * 237.85610 * 24 10 9 26 26 C 1.53100 * 109.15437 * 183.24475 * 25 24 10 27 27 O 1.42905 * 109.49017 * 57.47273 * 26 25 24 28 28 C 1.42901 * 114.09487 * 298.88817 * 27 26 25 29 29 C 1.53088 * 109.41525 * 61.15815 * 28 27 26 30 30 H 0.96994 * 119.99451 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47008 * 59.99795 * 9 7 2 32 32 H 1.09003 * 109.47234 * 300.00042 * 9 7 2 33 33 H 1.08999 * 109.81077 * 55.50381 * 16 15 13 34 34 H 1.09001 * 109.80903 * 176.39429 * 16 15 13 35 35 H 1.09002 * 108.66508 * 173.99421 * 17 16 15 36 36 H 1.09005 * 108.66447 * 292.01164 * 17 16 15 37 37 H 1.07992 * 119.23698 * 358.87689 * 19 18 17 38 38 H 1.07997 * 120.24269 * 180.14157 * 20 19 18 39 39 H 1.07999 * 120.37155 * 180.59842 * 21 20 19 40 40 H 1.08001 * 119.32831 * 179.47412 * 22 21 20 41 41 H 1.08997 * 109.54178 * 358.03055 * 24 10 9 42 42 H 1.09004 * 109.52278 * 303.05388 * 25 24 10 43 43 H 1.08994 * 109.52651 * 63.24566 * 25 24 10 44 44 H 1.09001 * 109.40515 * 297.48929 * 26 25 24 45 45 H 1.09003 * 109.49415 * 177.50763 * 26 25 24 46 46 H 1.09000 * 109.48412 * 301.17515 * 28 27 26 47 47 H 1.09006 * 109.48750 * 181.14819 * 28 27 26 48 48 H 1.09005 * 109.52364 * 182.47767 * 29 28 27 49 49 H 1.09001 * 109.57480 * 62.32499 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 7 3.9999 -2.5754 0.0001 11 6 4.2240 -3.2110 -1.1670 12 8 4.5405 -4.3818 -1.1690 13 6 4.0814 -2.4669 -2.4698 14 1 3.3985 -1.6285 -2.3330 15 16 5.7055 -1.8407 -2.9781 16 6 5.3711 -1.3870 -4.7093 17 6 5.0285 -2.6626 -5.4647 18 6 3.9313 -3.4640 -4.8239 19 6 3.2930 -4.3646 -5.6843 20 6 2.2839 -5.1873 -5.2434 21 6 1.8874 -5.1299 -3.9198 22 6 2.5002 -4.2360 -3.0725 23 6 3.5246 -3.3983 -3.5179 24 6 4.2445 -3.2657 1.2689 25 6 5.7040 -3.7269 1.3282 26 6 5.9291 -4.5169 2.6202 27 8 5.0241 -5.6218 2.6672 28 6 3.6451 -5.2470 2.6633 29 6 3.3276 -4.4884 1.3721 30 1 -0.4849 0.8400 -0.0004 31 1 3.8753 -0.6798 0.8894 32 1 3.8746 -0.6810 -0.8905 33 1 4.5308 -0.6943 -4.7540 34 1 6.2557 -0.9246 -5.1475 35 1 4.7214 -2.3971 -6.4763 36 1 5.9224 -3.2836 -5.5241 37 1 3.6007 -4.4146 -6.7182 38 1 1.8070 -5.8763 -5.9248 39 1 1.1026 -5.7768 -3.5564 40 1 2.1856 -4.1842 -2.0406 41 1 4.0425 -2.5874 2.0979 42 1 5.9197 -4.3644 0.4708 43 1 6.3616 -2.8578 1.3117 44 1 5.7539 -3.8668 3.4774 45 1 6.9545 -4.8855 2.6472 46 1 3.4400 -4.6065 3.5211 47 1 3.0250 -6.1416 2.7212 48 1 2.2872 -4.1634 1.3870 49 1 3.4930 -5.1411 0.5150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080024812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -49.431295 kcal Electronic energy + Delta-G solvation = -31952.979697 eV Core-core repulsion = 27971.078822 eV Total energy + Delta-G solvation = -3981.900875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.34206 -39.30455 -38.09212 -35.33187 -34.38403 -33.29500 -32.46383 -31.46502 -30.82180 -29.59879 -27.91178 -27.52804 -24.57098 -23.60745 -23.28512 -22.76641 -22.11967 -20.61861 -20.19569 -18.57240 -17.14142 -16.64621 -16.51042 -16.38814 -15.90340 -15.78367 -15.33896 -15.13042 -14.86239 -14.53702 -14.37311 -14.21641 -14.07874 -13.62569 -13.44622 -13.14379 -12.90959 -12.85472 -12.75958 -12.51542 -12.38427 -12.11570 -11.96686 -11.89936 -11.40793 -11.31521 -11.27521 -11.04480 -10.90286 -10.79905 -10.71358 -10.58785 -10.24444 -10.03742 -9.85967 -9.71379 -9.45220 -8.98343 -8.79852 -8.49267 -8.40665 -7.85760 -7.55595 -6.29543 -4.32336 1.41040 1.59143 1.67315 2.45768 3.12179 3.20504 3.22593 3.35198 3.60056 3.97265 4.11317 4.19845 4.59320 4.70012 4.83622 4.85926 5.01612 5.09892 5.11581 5.18531 5.21579 5.28539 5.33401 5.40066 5.46952 5.52532 5.57382 5.66037 5.66858 5.68976 5.73787 5.83638 5.85473 5.88238 5.93528 6.14531 6.23546 6.25561 6.31873 6.38314 6.55576 6.57804 6.62007 6.68615 6.72353 6.78536 7.18131 7.27571 7.34515 7.41085 7.97072 8.29816 8.70098 8.78070 9.29235 10.82566 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007009 B = 0.005314 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.886842 B = 5267.558592 C = 6989.997777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.203 3.797 10 N -0.580 5.580 11 C 0.547 3.453 12 O -0.534 6.534 13 C -0.043 4.043 14 H 0.137 0.863 15 S -0.220 6.220 16 C -0.087 4.087 17 C -0.076 4.076 18 C -0.075 4.075 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.052 4.052 24 C 0.161 3.839 25 C -0.175 4.175 26 C 0.070 3.930 27 O -0.385 6.385 28 C 0.067 3.933 29 C -0.172 4.172 30 H 0.267 0.733 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -5.076 -6.029 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.082 3.918 10 N -0.309 5.309 11 C 0.332 3.668 12 O -0.413 6.413 13 C -0.174 4.174 14 H 0.155 0.845 15 S 0.008 5.992 16 C -0.235 4.235 17 C -0.114 4.114 18 C -0.075 4.075 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.099 4.099 23 C -0.054 4.054 24 C 0.057 3.943 25 C -0.214 4.214 26 C -0.008 4.008 27 O -0.303 6.303 28 C -0.010 4.010 29 C -0.211 4.211 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.797 -5.598 -5.398 12.508 hybrid contribution -1.149 1.445 -0.653 1.958 sum 8.648 -4.154 -6.051 11.343 Atomic orbital electron populations 1.69882 1.06186 1.27284 1.49016 1.24854 0.94709 0.98825 0.94089 0.86996 0.80595 0.84057 0.79148 1.19705 1.20764 1.18672 1.21353 0.88818 0.95081 1.53037 0.90250 1.19968 0.96012 0.77846 0.97988 1.47896 1.63389 1.15633 1.04015 1.19177 0.77297 0.86468 0.83888 1.90611 1.48366 1.15517 1.86777 1.22376 0.97976 1.01806 0.95278 0.84520 1.86942 1.16418 1.81896 1.13946 1.23337 1.05822 1.00131 0.94218 1.20386 0.97656 0.94745 0.98661 1.19279 0.97447 0.98273 0.92509 1.21173 0.97448 0.97040 0.99053 1.20935 0.97498 0.99186 0.95924 1.20989 1.00228 0.99028 0.93757 1.21318 0.94259 0.94171 1.00124 1.18889 0.96992 0.97348 0.92161 1.20870 0.93645 0.93593 0.86161 1.22661 0.97011 1.01194 1.00485 1.22467 0.93726 0.88596 0.95988 1.87890 1.15851 1.31888 1.94710 1.22536 0.82425 0.99564 0.96452 1.22632 1.00590 0.98001 0.99836 0.92283 0.94588 0.94801 0.89146 0.87001 0.89958 0.89603 0.86453 0.86207 0.85952 0.85948 0.89568 0.88780 0.91285 0.93535 0.89168 0.93419 0.89081 0.90263 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 13.96 55.43 0.77 -24.27 16 2 C 0.08 2.08 5.47 -17.81 -0.10 1.99 16 3 Si 0.87 19.41 27.47 -169.99 -4.67 14.74 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 7 C -0.54 -13.78 9.72 -34.44 -0.33 -14.11 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.20 4.38 3.83 -5.19 -0.02 4.36 16 10 N -0.58 -11.52 2.41 -167.26 -0.40 -11.93 16 11 C 0.55 10.93 4.74 -10.98 -0.05 10.87 16 12 O -0.53 -11.38 11.82 5.56 0.07 -11.31 16 13 C -0.04 -0.82 2.27 -28.95 -0.07 -0.88 16 14 H 0.14 2.80 5.94 -51.92 -0.31 2.49 16 15 S -0.22 -3.61 21.66 -107.50 -2.33 -5.94 16 16 C -0.09 -1.06 6.57 36.72 0.24 -0.82 16 17 C -0.08 -0.90 5.29 -28.55 -0.15 -1.05 16 18 C -0.07 -1.12 5.74 -104.68 -0.60 -1.72 16 19 C -0.13 -1.72 9.39 -39.22 -0.37 -2.09 16 20 C -0.12 -1.58 10.05 -39.85 -0.40 -1.98 16 21 C -0.12 -1.88 10.07 -39.80 -0.40 -2.28 16 22 C -0.08 -1.45 8.30 -39.31 -0.33 -1.77 16 23 C -0.05 -0.93 5.20 -104.49 -0.54 -1.47 16 24 C 0.16 2.87 2.64 -67.75 -0.18 2.69 16 25 C -0.18 -2.81 5.36 -26.59 -0.14 -2.96 16 26 C 0.07 0.97 6.84 37.21 0.25 1.22 16 27 O -0.38 -6.09 10.77 -35.23 -0.38 -6.47 16 28 C 0.07 0.99 6.84 37.20 0.25 1.25 16 29 C -0.17 -3.00 5.41 -26.60 -0.14 -3.14 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 0.77 6.96 -51.93 -0.36 0.41 16 32 H 0.03 0.73 5.62 -51.93 -0.29 0.44 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.12 1.21 7.94 -52.49 -0.42 0.79 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.46 6.90 -52.49 -0.36 2.10 16 41 H 0.09 1.50 7.79 -51.93 -0.40 1.10 16 42 H 0.09 1.75 6.12 -51.93 -0.32 1.43 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.09 1.82 6.07 -51.93 -0.32 1.50 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -29.81 389.62 -11.58 -41.38 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.43 Total: 9.82 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.08 Total: -11.90 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.37 Total: -36.19 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.31 Total: -17.78 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.67 Total: 14.74 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.33 Total: -5.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.81 -11.58 -41.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080024812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.047 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds