Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00317 * 2 1 4 4 H 1.48499 * 109.46945 * 269.99934 * 3 2 1 5 5 H 1.48503 * 109.46788 * 29.99919 * 3 2 1 6 6 H 1.48495 * 109.47246 * 149.99963 * 3 2 1 7 7 C 1.37886 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99869 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00231 * 89.99819 * 10 9 7 12 12 O 1.21276 * 120.00497 * 185.01995 * 11 10 9 13 13 C 1.50705 * 119.99748 * 5.01960 * 11 10 9 14 14 H 1.09002 * 109.30691 * 335.02933 * 13 11 10 15 15 S 1.81329 * 109.15453 * 94.54255 * 13 11 10 16 16 C 1.82065 * 100.84597 * 166.11585 * 15 13 11 17 17 C 1.52150 * 107.72781 * 295.94710 * 16 15 13 18 18 C 1.50227 * 113.57593 * 52.93120 * 17 16 15 19 19 C 1.39955 * 114.46808 * 159.55902 * 18 17 16 20 20 C 1.37457 * 121.52121 * 178.85225 * 19 18 17 21 21 C 1.38291 * 119.51144 * 359.88864 * 20 19 18 22 22 C 1.37574 * 119.25776 * 0.85337 * 21 20 19 23 23 C 1.36941 * 126.73482 * 339.06474 * 18 17 16 24 24 C 1.46504 * 119.99710 * 270.00246 * 10 9 7 25 25 C 1.53178 * 109.53956 * 237.85610 * 24 10 9 26 26 C 1.53100 * 109.15437 * 183.24475 * 25 24 10 27 27 O 1.42905 * 109.49017 * 57.47273 * 26 25 24 28 28 C 1.42901 * 114.09487 * 298.88817 * 27 26 25 29 29 C 1.53088 * 109.41525 * 61.15815 * 28 27 26 30 30 H 0.96994 * 119.99451 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47008 * 59.99795 * 9 7 2 32 32 H 1.09003 * 109.47234 * 300.00042 * 9 7 2 33 33 H 1.08999 * 109.81077 * 55.50381 * 16 15 13 34 34 H 1.09001 * 109.80903 * 176.39429 * 16 15 13 35 35 H 1.09002 * 108.66508 * 173.99421 * 17 16 15 36 36 H 1.09005 * 108.66447 * 292.01164 * 17 16 15 37 37 H 1.07992 * 119.23698 * 358.87689 * 19 18 17 38 38 H 1.07997 * 120.24269 * 180.14157 * 20 19 18 39 39 H 1.07999 * 120.37155 * 180.59842 * 21 20 19 40 40 H 1.08001 * 119.32831 * 179.47412 * 22 21 20 41 41 H 1.08997 * 109.54178 * 358.03055 * 24 10 9 42 42 H 1.09004 * 109.52278 * 303.05388 * 25 24 10 43 43 H 1.08994 * 109.52651 * 63.24566 * 25 24 10 44 44 H 1.09001 * 109.40515 * 297.48929 * 26 25 24 45 45 H 1.09003 * 109.49415 * 177.50763 * 26 25 24 46 46 H 1.09000 * 109.48412 * 301.17515 * 28 27 26 47 47 H 1.09006 * 109.48750 * 181.14819 * 28 27 26 48 48 H 1.09005 * 109.52364 * 182.47767 * 29 28 27 49 49 H 1.09001 * 109.57480 * 62.32499 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 7 3.9999 -2.5754 0.0001 11 6 4.2240 -3.2110 -1.1670 12 8 4.5405 -4.3818 -1.1690 13 6 4.0814 -2.4669 -2.4698 14 1 3.3985 -1.6285 -2.3330 15 16 5.7055 -1.8407 -2.9781 16 6 5.3711 -1.3870 -4.7093 17 6 5.0285 -2.6626 -5.4647 18 6 3.9313 -3.4640 -4.8239 19 6 3.2930 -4.3646 -5.6843 20 6 2.2839 -5.1873 -5.2434 21 6 1.8874 -5.1299 -3.9198 22 6 2.5002 -4.2360 -3.0725 23 6 3.5246 -3.3983 -3.5179 24 6 4.2445 -3.2657 1.2689 25 6 5.7040 -3.7269 1.3282 26 6 5.9291 -4.5169 2.6202 27 8 5.0241 -5.6218 2.6672 28 6 3.6451 -5.2470 2.6633 29 6 3.3276 -4.4884 1.3721 30 1 -0.4849 0.8400 -0.0004 31 1 3.8753 -0.6798 0.8894 32 1 3.8746 -0.6810 -0.8905 33 1 4.5308 -0.6943 -4.7540 34 1 6.2557 -0.9246 -5.1475 35 1 4.7214 -2.3971 -6.4763 36 1 5.9224 -3.2836 -5.5241 37 1 3.6007 -4.4146 -6.7182 38 1 1.8070 -5.8763 -5.9248 39 1 1.1026 -5.7768 -3.5564 40 1 2.1856 -4.1842 -2.0406 41 1 4.0425 -2.5874 2.0979 42 1 5.9197 -4.3644 0.4708 43 1 6.3616 -2.8578 1.3117 44 1 5.7539 -3.8668 3.4774 45 1 6.9545 -4.8855 2.6472 46 1 3.4400 -4.6065 3.5211 47 1 3.0250 -6.1416 2.7212 48 1 2.2872 -4.1634 1.3870 49 1 3.4930 -5.1411 0.5150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080024812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -65.613671 kcal Electronic energy + Delta-G solvation = -31953.681417 eV Core-core repulsion = 27971.078822 eV Total energy + Delta-G solvation = -3982.602596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79541 -40.52115 -39.42536 -36.95984 -35.43675 -34.96137 -34.10075 -32.89861 -32.09615 -30.71473 -29.74616 -28.84266 -25.83409 -24.87298 -24.61504 -24.41463 -23.41379 -21.87717 -21.45690 -20.07373 -19.13029 -18.11081 -17.94789 -17.65664 -17.28074 -17.01428 -16.55522 -16.38827 -16.14853 -16.06938 -15.72716 -15.62733 -15.36046 -14.98000 -14.77319 -14.62929 -14.40646 -14.23268 -14.01887 -13.95390 -13.73640 -13.51600 -13.32145 -13.12787 -12.98613 -12.75863 -12.59035 -12.46135 -12.30030 -12.17797 -12.10669 -11.90475 -11.84213 -11.66390 -11.35016 -11.05468 -10.84994 -10.84160 -10.39986 -9.70486 -9.61294 -9.49680 -8.83706 -8.35428 -6.43400 0.15458 0.39332 0.43738 1.31247 1.34386 1.35970 1.45470 1.80402 2.10893 2.28599 2.75711 2.93364 2.97985 3.33273 3.42369 3.71640 3.78606 3.81099 3.84656 4.00868 4.03185 4.09876 4.14000 4.18056 4.23275 4.28737 4.36025 4.49038 4.49940 4.53135 4.58067 4.68318 4.70516 4.71556 4.73749 4.78200 4.87875 4.90934 4.98273 5.01537 5.12823 5.17795 5.18482 5.36198 5.48314 5.51291 5.56655 5.70998 6.03085 6.10622 6.21392 6.48044 6.62069 7.13147 7.24626 8.80466 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007009 B = 0.005314 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3993.886842 B = 5267.558592 C = 6989.997777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.540 4.540 8 H 0.031 0.969 9 C 0.215 3.785 10 N -0.586 5.586 11 C 0.547 3.453 12 O -0.553 6.553 13 C -0.040 4.040 14 H 0.107 0.893 15 S -0.247 6.247 16 C -0.076 4.076 17 C -0.075 4.075 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.081 4.081 24 C 0.150 3.850 25 C -0.163 4.163 26 C 0.069 3.931 27 O -0.398 6.398 28 C 0.073 3.927 29 C -0.164 4.164 30 H 0.269 0.731 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.105 0.895 48 H 0.054 0.946 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -4.282 -8.103 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.578 4.578 8 H 0.049 0.951 9 C 0.093 3.907 10 N -0.316 5.316 11 C 0.333 3.667 12 O -0.433 6.433 13 C -0.171 4.171 14 H 0.124 0.876 15 S -0.019 6.019 16 C -0.223 4.223 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.140 4.140 20 C -0.130 4.130 21 C -0.152 4.152 22 C -0.133 4.133 23 C -0.083 4.083 24 C 0.047 3.953 25 C -0.202 4.202 26 C -0.008 4.008 27 O -0.316 6.316 28 C -0.004 4.004 29 C -0.203 4.203 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.123 0.877 48 H 0.073 0.927 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.496 -4.824 -7.462 15.333 hybrid contribution -2.053 1.084 -0.108 2.324 sum 10.443 -3.739 -7.570 13.429 Atomic orbital electron populations 1.70041 1.08231 1.28378 1.50955 1.25718 0.95419 1.02782 0.93556 0.85943 0.80007 0.78826 0.79830 1.18688 1.20652 1.16207 1.21431 0.90856 0.93271 1.52277 0.95110 1.19735 0.93274 0.79164 0.98546 1.47949 1.63413 1.15210 1.05016 1.19468 0.76494 0.86311 0.84461 1.90580 1.49310 1.16249 1.87166 1.22138 0.98890 1.00903 0.95166 0.87554 1.86893 1.14796 1.81775 1.18405 1.23570 1.07433 1.00739 0.90589 1.20500 0.96898 0.94053 0.99874 1.19771 0.98162 0.98862 0.91384 1.21694 0.96233 0.95356 1.00692 1.21376 0.97214 0.99355 0.95035 1.21216 1.00482 0.98612 0.94924 1.21187 0.96415 0.96860 0.98872 1.19021 0.97739 0.97977 0.93580 1.21122 0.95144 0.93507 0.85495 1.22554 0.95475 1.01344 1.00822 1.22654 0.94507 0.88334 0.95255 1.87877 1.16153 1.33017 1.94602 1.22549 0.82560 1.00137 0.95115 1.22503 0.99221 0.97911 1.00637 0.92192 0.93425 0.94099 0.89179 0.83382 0.85964 0.88419 0.82074 0.82468 0.85080 0.90199 0.88970 0.91633 0.90101 0.91204 0.86854 0.91462 0.87728 0.92683 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.59 13.96 21.45 0.30 -55.29 16 2 C 0.02 1.35 5.47 84.66 0.46 1.82 16 3 Si 0.93 40.22 27.47 68.60 1.88 42.10 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 7 C -0.54 -29.12 9.72 25.60 0.25 -28.87 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.21 9.61 3.83 85.63 0.33 9.94 16 10 N -0.59 -24.77 2.41 -801.48 -1.93 -26.70 16 11 C 0.55 23.46 4.74 87.66 0.42 23.88 16 12 O -0.55 -25.47 11.82 -3.02 -0.04 -25.51 16 13 C -0.04 -1.58 2.27 29.16 0.07 -1.52 16 14 H 0.11 4.70 5.94 -2.39 -0.01 4.68 16 15 S -0.25 -7.96 21.66 -56.49 -1.22 -9.18 16 16 C -0.08 -1.63 6.57 71.70 0.47 -1.16 16 17 C -0.08 -1.49 5.29 29.42 0.16 -1.33 16 18 C -0.08 -2.31 5.74 -19.90 -0.11 -2.42 16 19 C -0.12 -2.85 9.39 22.50 0.21 -2.64 16 20 C -0.11 -2.79 10.05 22.10 0.22 -2.56 16 21 C -0.13 -4.32 10.07 22.13 0.22 -4.10 16 22 C -0.11 -4.53 8.30 22.45 0.19 -4.35 16 23 C -0.08 -3.02 5.20 -19.78 -0.10 -3.13 16 24 C 0.15 5.60 2.64 45.11 0.12 5.71 16 25 C -0.16 -5.29 5.36 30.69 0.16 -5.12 16 26 C 0.07 1.82 6.84 72.02 0.49 2.32 16 27 O -0.40 -12.35 10.77 -148.98 -1.60 -13.95 16 28 C 0.07 2.19 6.84 72.01 0.49 2.69 16 29 C -0.16 -6.18 5.41 30.68 0.17 -6.01 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.05 2.03 6.96 -2.39 -0.02 2.01 16 32 H 0.04 1.80 5.62 -2.39 -0.01 1.78 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 1.54 7.96 -2.39 -0.02 1.52 16 36 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.16 2.36 7.94 -2.91 -0.02 2.34 16 38 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.08 3.73 6.90 -2.91 -0.02 3.71 16 41 H 0.09 3.27 7.79 -2.39 -0.02 3.25 16 42 H 0.06 2.52 6.12 -2.39 -0.01 2.51 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 48 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.06 2.81 6.07 -2.39 -0.01 2.79 16 Total: -1.00 -72.07 389.62 2.49 -69.58 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.89 Total: 35.81 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.21 Total: -16.86 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.64 Total: -82.00 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.64 Total: -39.46 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.88 Total: 42.10 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.22 Total: -9.18 kcal Total: -72.07 2.49 -69.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080024812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.967 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds