Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48496 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47207 * 300.00039 * 3 2 1 6 6 H 1.48506 * 109.47028 * 60.00266 * 3 2 1 7 7 C 1.37888 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99883 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99751 * 94.40496 * 10 9 7 12 12 O 1.21278 * 119.99683 * 174.38853 * 11 10 9 13 13 C 1.50704 * 119.99971 * 354.38068 * 11 10 9 14 14 H 1.08997 * 109.30715 * 25.35093 * 13 11 10 15 15 S 1.81319 * 109.31046 * 265.93512 * 13 11 10 16 16 C 1.82072 * 100.85676 * 193.78788 * 15 13 11 17 17 C 1.52143 * 107.72481 * 64.01776 * 16 15 13 18 18 C 1.50229 * 113.55944 * 306.96587 * 17 16 15 19 19 C 1.39947 * 114.46930 * 200.22296 * 18 17 16 20 20 C 1.37454 * 121.52003 * 181.73912 * 19 18 17 21 21 C 1.38285 * 119.50756 * 359.96984 * 20 19 18 22 22 C 1.37569 * 119.26838 * 359.59144 * 21 20 19 23 23 C 1.36937 * 126.72024 * 21.25626 * 18 17 16 24 24 C 1.46496 * 119.99914 * 274.68247 * 10 9 7 25 25 C 1.53175 * 109.54259 * 243.86973 * 24 10 9 26 26 C 1.53093 * 109.16134 * 183.15792 * 25 24 10 27 27 O 1.42902 * 109.42159 * 57.60535 * 26 25 24 28 28 C 1.42905 * 114.09735 * 298.84810 * 27 26 25 29 29 C 1.53092 * 109.41691 * 61.15072 * 28 27 26 30 30 H 0.96996 * 120.00256 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.47298 * 59.99885 * 9 7 2 32 32 H 1.09003 * 109.47523 * 300.00179 * 9 7 2 33 33 H 1.08995 * 109.81379 * 304.45641 * 16 15 13 34 34 H 1.09001 * 109.85949 * 183.59769 * 16 15 13 35 35 H 1.09000 * 108.66661 * 185.91565 * 17 16 15 36 36 H 1.08996 * 108.66926 * 68.02312 * 17 16 15 37 37 H 1.08007 * 119.23913 * 1.76203 * 19 18 17 38 38 H 1.08001 * 120.24394 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.36897 * 179.61180 * 21 20 19 40 40 H 1.08001 * 119.33456 * 180.11533 * 22 21 20 41 41 H 1.09004 * 109.54404 * 4.13698 * 24 10 9 42 42 H 1.08999 * 109.52298 * 303.05850 * 25 24 10 43 43 H 1.08997 * 109.52244 * 63.24943 * 25 24 10 44 44 H 1.09009 * 109.47751 * 297.61849 * 26 25 24 45 45 H 1.09000 * 109.48894 * 177.60061 * 26 25 24 46 46 H 1.09005 * 109.47734 * 301.16860 * 28 27 26 47 47 H 1.08992 * 109.49176 * 181.14509 * 28 27 26 48 48 H 1.08996 * 109.52048 * 182.48829 * 29 28 27 49 49 H 1.09000 * 109.51864 * 62.30005 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6128 0.0005 11 6 2.5727 -4.1832 1.1643 12 8 3.2799 -5.1684 1.1589 13 6 2.1074 -3.5967 2.4722 14 1 1.1783 -3.0499 2.3118 15 16 3.3687 -2.4552 3.0999 16 6 2.8017 -2.2272 4.8150 17 6 2.8990 -3.5730 5.5179 18 6 2.1956 -4.6829 4.7897 19 6 1.8817 -5.7906 5.5853 20 6 1.2690 -6.9029 5.0592 21 6 0.9526 -6.9336 3.7133 22 6 1.2502 -5.8444 2.9274 23 6 1.8664 -4.7107 3.4608 24 6 2.7577 -4.1022 -1.2639 25 6 2.3079 -5.5481 -1.4952 26 6 2.9556 -6.0768 -2.7777 27 8 4.3770 -5.9793 -2.6672 28 6 4.8588 -4.6447 -2.4971 29 6 4.2877 -4.0585 -1.2033 30 1 -0.4850 0.8400 0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 1.7679 -1.8819 4.8196 34 1 3.4361 -1.4995 5.3211 35 1 2.4649 -3.4789 6.5133 36 1 3.9514 -3.8365 5.6228 37 1 2.1261 -5.7709 6.6372 38 1 1.0365 -7.7465 5.6921 39 1 0.4768 -7.8029 3.2840 40 1 1.0018 -5.8665 1.8766 41 1 2.4071 -3.4744 -2.0832 42 1 2.6157 -6.1648 -0.6508 43 1 1.2230 -5.5805 -1.5948 44 1 2.6155 -5.4847 -3.6274 45 1 2.6730 -7.1192 -2.9247 46 1 4.5437 -4.0339 -3.3431 47 1 5.9473 -4.6553 -2.4419 48 1 4.6185 -3.0257 -1.0943 49 1 4.6355 -4.6451 -0.3530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080024816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = -64.255831 kcal Electronic energy + Delta-G solvation = -31872.770763 eV Core-core repulsion = 27890.227047 eV Total energy + Delta-G solvation = -3982.543716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74676 -40.49664 -39.38992 -36.87861 -35.40722 -34.92946 -34.01273 -32.77409 -32.07673 -30.68202 -29.11791 -28.76117 -25.80557 -25.12965 -24.55387 -24.48333 -23.41358 -21.85784 -21.42076 -20.03435 -18.66392 -18.06764 -17.86882 -17.57864 -17.23678 -16.98796 -16.53055 -16.31501 -16.28324 -16.03014 -15.70259 -15.54738 -15.30237 -15.02403 -14.67252 -14.43307 -14.29222 -14.07719 -14.01462 -13.88935 -13.60421 -13.38045 -13.29644 -13.02546 -12.90243 -12.76949 -12.60055 -12.43266 -12.20685 -12.18929 -12.10948 -12.02268 -11.81260 -11.53881 -11.32843 -10.93485 -10.79295 -10.60927 -10.34894 -9.68083 -9.57093 -9.48662 -8.64361 -8.18213 -6.28136 0.22187 0.41894 0.49966 1.38700 1.42791 1.44221 1.53451 1.95107 2.10573 2.43698 2.79174 2.94946 3.13686 3.41866 3.46784 3.73528 3.81494 3.84458 3.88584 4.02884 4.03439 4.10697 4.14558 4.21690 4.23144 4.30806 4.40726 4.50608 4.52464 4.56354 4.62936 4.71515 4.72767 4.77533 4.86488 4.88365 4.91335 5.00470 5.03068 5.10586 5.14110 5.21657 5.24919 5.51262 5.54557 5.58272 5.70530 5.83242 6.04534 6.05817 6.22590 6.48728 6.81276 7.21611 7.42059 8.88570 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.005523 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.889959 B = 5068.411894 C = 7769.217791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.251 3.749 10 N -0.588 5.588 11 C 0.544 3.456 12 O -0.555 6.555 13 C -0.031 4.031 14 H 0.101 0.899 15 S -0.250 6.250 16 C -0.079 4.079 17 C -0.074 4.074 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.084 4.084 24 C 0.152 3.848 25 C -0.163 4.163 26 C 0.070 3.930 27 O -0.397 6.397 28 C 0.073 3.927 29 C -0.164 4.164 30 H 0.266 0.734 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.113 0.887 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.060 0.940 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -10.316 7.591 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.130 3.870 10 N -0.318 5.318 11 C 0.330 3.670 12 O -0.436 6.436 13 C -0.162 4.162 14 H 0.119 0.881 15 S -0.021 6.021 16 C -0.227 4.227 17 C -0.113 4.113 18 C -0.083 4.083 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.086 4.086 24 C 0.048 3.952 25 C -0.202 4.202 26 C -0.007 4.007 27 O -0.316 6.316 28 C -0.004 4.004 29 C -0.202 4.202 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.125 0.875 48 H 0.079 0.921 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.798 -10.349 7.015 13.066 hybrid contribution -1.228 1.212 0.145 1.732 sum 2.570 -9.137 7.160 11.889 Atomic orbital electron populations 1.70005 1.07080 1.27829 1.51469 1.25481 0.95357 1.01808 0.94644 0.85649 0.79061 0.80181 0.77694 1.19742 1.20532 1.20477 1.21454 0.92948 0.90844 1.50294 0.93102 1.19202 0.87454 0.83423 0.96918 1.48214 1.44253 1.34048 1.05256 1.19443 0.80121 0.82941 0.84536 1.90573 1.39107 1.26549 1.87349 1.22033 1.01409 0.97388 0.95367 0.88115 1.87318 1.38751 1.60203 1.15835 1.23501 1.05565 1.01699 0.91902 1.20481 1.01804 0.89675 0.99295 1.19722 0.98749 0.98121 0.91702 1.21656 0.99113 0.92417 1.00874 1.21391 0.97729 0.98995 0.94940 1.21251 1.00544 0.97870 0.94899 1.21206 0.98827 0.94108 0.99134 1.19113 1.01463 0.94658 0.93374 1.21057 0.93410 0.95032 0.85653 1.22563 1.01106 0.95981 1.00541 1.22637 0.80054 1.02899 0.95144 1.87872 1.22285 1.27986 1.93490 1.22565 0.99853 0.83042 0.94929 1.22496 0.95593 1.01376 1.00783 0.92541 0.95953 0.95933 0.89587 0.84484 0.86208 0.88917 0.82624 0.82462 0.84092 0.88870 0.89586 0.91365 0.90688 0.91531 0.86911 0.91586 0.87473 0.92136 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.95 13.29 21.45 0.28 -50.66 16 2 C 0.03 1.41 5.46 84.66 0.46 1.87 16 3 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.52 -26.88 9.38 25.60 0.24 -26.64 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.25 12.15 4.92 85.63 0.42 12.57 16 10 N -0.59 -25.37 2.41 -801.47 -1.94 -27.30 16 11 C 0.54 23.44 4.75 87.66 0.42 23.86 16 12 O -0.56 -25.23 11.74 -3.02 -0.04 -25.27 16 13 C -0.03 -1.26 2.59 29.16 0.08 -1.18 16 14 H 0.10 4.51 5.57 -2.40 -0.01 4.49 16 15 S -0.25 -9.66 21.67 -56.49 -1.22 -10.89 16 16 C -0.08 -2.10 6.57 71.70 0.47 -1.63 16 17 C -0.07 -1.66 5.29 29.42 0.16 -1.50 16 18 C -0.08 -2.32 5.74 -19.90 -0.11 -2.44 16 19 C -0.12 -2.71 9.39 22.50 0.21 -2.50 16 20 C -0.11 -2.43 10.05 22.10 0.22 -2.21 16 21 C -0.13 -3.39 10.06 22.12 0.22 -3.17 16 22 C -0.11 -3.87 8.27 22.45 0.19 -3.68 16 23 C -0.08 -2.98 5.22 -19.78 -0.10 -3.08 16 24 C 0.15 5.74 2.64 45.11 0.12 5.86 16 25 C -0.16 -5.38 5.44 30.68 0.17 -5.22 16 26 C 0.07 1.87 6.84 72.01 0.49 2.36 16 27 O -0.40 -12.29 10.77 -148.98 -1.60 -13.89 16 28 C 0.07 2.14 6.84 72.01 0.49 2.63 16 29 C -0.16 -6.02 5.32 30.69 0.16 -5.86 16 30 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.02 1.14 8.06 -2.38 -0.02 1.12 16 32 H 0.02 1.17 5.68 -2.39 -0.01 1.16 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.12 1.78 7.96 -2.39 -0.02 1.76 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.16 2.24 7.94 -2.91 -0.02 2.22 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.09 3.49 6.84 -2.91 -0.02 3.47 16 41 H 0.09 3.24 7.89 -2.39 -0.02 3.22 16 42 H 0.07 2.60 6.23 -2.39 -0.01 2.58 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.07 2.83 5.97 -2.39 -0.01 2.82 16 Total: -1.00 -66.63 393.16 2.76 -63.87 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.95 Total: 29.38 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.30 Total: -9.96 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -1.65 Total: -77.97 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.64 Total: -39.15 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.22 Total: -10.89 kcal Total: -66.63 2.76 -63.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080024816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.385 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds