Wall clock time and date at job start Tue Mar 31 2020 05:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86810 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47012 * 240.00222 * 3 2 1 5 5 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47293 * 120.00120 * 3 2 1 7 7 C 1.37874 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00609 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99221 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46717 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.46530 * 179.97438 * 10 9 7 12 12 C 1.35908 * 116.99415 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.02101 * 359.72537 * 12 11 10 14 14 C 1.38177 * 120.09081 * 179.74097 * 13 12 11 15 15 C 1.38154 * 120.12151 * 0.51121 * 14 13 12 16 16 C 1.38909 * 120.03951 * 359.76665 * 15 14 13 17 17 N 1.39847 * 120.04435 * 180.02562 * 16 15 14 18 18 C 1.34784 * 120.00000 * 213.32405 * 17 16 15 19 19 O 1.21591 * 119.99991 * 5.28210 * 18 17 16 20 20 C 1.47573 * 119.99849 * 185.28248 * 18 17 16 21 21 C 1.39755 * 120.08271 * 179.97438 * 20 18 17 22 22 C 1.37708 * 119.93002 * 180.02562 * 21 20 18 23 23 C 1.38974 * 120.10302 * 359.97438 * 22 21 20 24 24 O 1.35735 * 119.90780 * 180.02562 * 23 22 21 25 25 C 1.39079 * 120.17310 * 359.97438 * 23 22 21 26 26 Cl 1.73595 * 119.96533 * 180.02562 * 25 23 22 27 27 C 1.37816 * 120.06616 * 359.76695 * 25 23 22 28 28 C 1.38576 * 120.01355 * 179.97438 * 12 11 10 29 29 H 0.97000 * 119.99966 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47373 * 60.00277 * 9 7 2 31 31 H 1.08997 * 109.47107 * 299.99613 * 9 7 2 32 32 H 1.08997 * 109.46840 * 60.00114 * 10 9 7 33 33 H 1.08997 * 109.47149 * 299.99751 * 10 9 7 34 34 H 1.08000 * 119.95544 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.93786 * 180.23082 * 14 13 12 36 36 H 1.08001 * 119.98257 * 179.74030 * 15 14 13 37 37 H 0.97003 * 120.00152 * 33.32027 * 17 16 15 38 38 H 1.08003 * 120.03428 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.94270 * 180.02562 * 22 21 20 40 40 H 0.96701 * 113.99721 * 90.00270 * 24 23 22 41 41 H 1.07999 * 120.04836 * 180.25646 * 27 25 23 42 42 H 1.07996 * 120.06743 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8995 0.0011 12 6 2.2710 -6.0393 0.0007 13 6 3.6571 -5.9672 -0.0061 14 6 4.4111 -7.1251 -0.0012 15 6 3.7881 -8.3581 -0.0002 16 6 2.4012 -8.4365 0.0008 17 7 1.7705 -9.6846 0.0024 18 6 0.5956 -9.8468 -0.6380 19 8 0.1315 -8.9363 -1.2968 20 6 -0.1275 -11.1295 -0.5395 21 6 -1.3461 -11.2993 -1.2023 22 6 -2.0185 -12.4974 -1.1078 23 6 -1.4869 -13.5376 -0.3549 24 8 -2.1527 -14.7169 -0.2649 25 6 -0.2740 -13.3735 0.3056 26 17 0.3855 -14.6766 1.2440 27 6 0.4075 -12.1793 0.2115 28 6 1.6422 -7.2742 0.0018 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8894 34 1 4.1470 -5.0047 -0.0114 35 1 5.4895 -7.0660 -0.0027 36 1 4.3797 -9.2617 -0.0005 37 1 2.1785 -10.4337 0.4643 38 1 -1.7601 -10.4918 -1.7880 39 1 -2.9600 -12.6290 -1.6202 40 1 -1.9165 -15.3554 -0.9517 41 1 1.3514 -12.0537 0.7211 42 1 0.5638 -7.3323 0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080392855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:11 Heat of formation + Delta-G solvation = -70.093002 kcal Electronic energy + Delta-G solvation = -27474.347023 eV Core-core repulsion = 23217.840293 eV Total energy + Delta-G solvation = -4256.506730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16595 -40.13381 -39.23604 -37.46201 -37.15878 -36.79737 -34.80032 -33.34452 -31.68909 -31.04882 -30.76641 -29.40330 -28.89142 -25.14665 -24.60844 -23.59887 -22.83146 -22.11340 -21.17543 -20.27937 -19.31698 -18.73715 -17.99522 -16.87807 -16.32863 -16.20188 -15.96824 -15.90102 -15.69574 -15.39542 -15.27511 -14.92486 -14.71030 -14.47852 -14.31974 -13.65525 -13.54926 -13.10679 -13.04104 -12.84162 -12.71470 -12.30567 -12.02263 -11.82682 -11.75218 -11.70919 -11.44716 -11.23392 -10.91129 -10.86904 -10.58224 -10.44082 -10.10061 -9.82588 -9.66315 -9.63923 -9.29533 -9.28573 -8.43694 -8.29946 -7.85136 -6.08092 -4.12992 -0.00562 0.46947 1.33841 1.46972 1.60891 2.26111 2.62027 3.09747 3.29998 3.34299 3.36013 3.37083 3.79131 3.94395 4.01733 4.17325 4.42514 4.44067 4.61635 4.75083 4.95278 5.00209 5.14877 5.23268 5.28051 5.33643 5.40559 5.49675 5.56846 5.66279 5.81732 5.87992 6.03288 6.05456 6.21901 6.31352 6.49987 6.58152 6.73773 6.87861 6.92677 7.07605 7.52640 7.66810 7.76073 7.82563 8.07660 8.25661 8.92382 9.51097 11.03394 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.001606 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.859749 B =17430.815165 C =18483.230858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.165 3.835 13 C -0.223 4.223 14 C -0.061 4.061 15 C -0.194 4.194 16 C 0.176 3.824 17 N -0.666 5.666 18 C 0.557 3.443 19 O -0.499 6.499 20 C -0.129 4.129 21 C -0.034 4.034 22 C -0.139 4.139 23 C 0.144 3.856 24 O -0.485 6.485 25 C -0.073 4.073 26 Cl -0.049 7.049 27 C -0.063 4.063 28 C -0.162 4.162 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.409 0.591 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.398 0.602 41 H 0.141 0.859 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -33.573 -0.647 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.224 6.224 12 C 0.117 3.883 13 C -0.243 4.243 14 C -0.079 4.079 15 C -0.215 4.215 16 C 0.083 3.917 17 N -0.312 5.312 18 C 0.345 3.655 19 O -0.373 6.373 20 C -0.133 4.133 21 C -0.053 4.053 22 C -0.157 4.157 23 C 0.098 3.902 24 O -0.296 6.296 25 C -0.100 4.100 26 Cl -0.020 7.020 27 C -0.083 4.083 28 C -0.183 4.183 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.246 0.754 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.256 0.744 41 H 0.159 0.841 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.372 -32.649 -0.550 32.682 hybrid contribution 1.186 0.189 -0.014 1.201 sum 2.558 -32.459 -0.564 32.565 Atomic orbital electron populations 1.69965 1.06100 1.27068 1.49557 1.24990 0.94905 0.99364 0.94926 0.86545 0.79490 0.82617 0.78690 1.20098 1.21128 1.20111 1.20931 0.93002 0.90209 1.52404 0.92394 1.19131 0.94193 0.88965 0.98948 1.23363 0.97119 0.80727 0.99724 1.86199 1.36491 1.13130 1.86614 1.18940 0.89870 0.87303 0.92186 1.21410 0.93090 1.00022 1.09749 1.20666 0.99447 0.91193 0.96628 1.20610 0.91951 0.98366 1.10552 1.17226 0.91076 0.83816 0.99630 1.43305 1.22513 1.11516 1.53831 1.18129 0.80718 0.87446 0.79214 1.90903 1.66094 1.41809 1.38507 1.19843 0.97431 0.93801 1.02204 1.21352 0.91952 0.97132 0.94902 1.21444 1.01638 0.92815 0.99842 1.18449 0.88854 0.87962 0.94922 1.84796 1.64772 1.23902 1.56149 1.21235 0.95427 0.91919 1.01469 1.98397 1.85034 1.47660 1.70934 1.21119 0.99587 0.90540 0.97019 1.20258 1.01153 0.88623 1.08271 0.92650 0.95334 0.95366 0.93020 0.93004 0.84950 0.85588 0.86028 0.75414 0.83017 0.83336 0.74382 0.84085 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.66 5.34 -27.87 -0.15 0.51 16 10 C 0.06 1.41 4.68 37.16 0.17 1.58 16 11 O -0.31 -6.69 10.13 -19.45 -0.20 -6.89 16 12 C 0.17 3.00 6.68 -39.25 -0.26 2.74 16 13 C -0.22 -3.46 9.04 -39.40 -0.36 -3.82 16 14 C -0.06 -0.75 10.03 -39.63 -0.40 -1.15 16 15 C -0.19 -2.23 9.96 -39.36 -0.39 -2.62 16 16 C 0.18 2.32 6.27 -83.74 -0.53 1.80 16 17 N -0.67 -6.69 5.28 -10.80 -0.06 -6.74 16 18 C 0.56 6.41 7.50 -12.45 -0.09 6.31 16 19 O -0.50 -7.81 14.03 5.29 0.07 -7.74 16 20 C -0.13 -1.10 5.87 -104.97 -0.62 -1.72 16 21 C -0.03 -0.27 9.58 -39.21 -0.38 -0.64 16 22 C -0.14 -0.85 9.97 -39.50 -0.39 -1.24 16 23 C 0.14 0.93 6.70 -39.00 -0.26 0.67 16 24 O -0.48 -2.59 12.94 -18.91 -0.24 -2.84 16 25 C -0.07 -0.50 6.32 -39.42 -0.25 -0.75 16 26 Cl -0.05 -0.32 28.49 -51.86 -1.48 -1.80 16 27 C -0.06 -0.42 9.31 -39.18 -0.36 -0.78 16 28 C -0.16 -2.72 8.59 -39.24 -0.34 -3.06 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 33 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 34 H 0.13 2.00 6.29 -52.49 -0.33 1.67 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.41 2.52 6.85 -40.82 -0.28 2.24 16 38 H 0.15 1.19 7.64 -52.48 -0.40 0.79 16 39 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.40 0.31 9.06 45.56 0.41 0.73 16 41 H 0.14 0.61 6.41 -52.49 -0.34 0.27 16 42 H 0.14 2.53 6.42 -52.49 -0.34 2.19 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -34.95 379.94 -9.19 -44.14 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.72 Total: 1.41 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -5.01 Total: -15.67 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.68 Total: -32.72 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.37 Total: -17.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.48 Total: -1.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.95 -9.19 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080392855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.949 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds