Wall clock time and date at job start Tue Mar 31 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86810 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47012 * 240.00222 * 3 2 1 5 5 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47293 * 120.00120 * 3 2 1 7 7 C 1.37874 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00609 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99221 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46717 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.46530 * 179.97438 * 10 9 7 12 12 C 1.35908 * 116.99415 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.02101 * 359.72537 * 12 11 10 14 14 C 1.38177 * 120.09081 * 179.74097 * 13 12 11 15 15 C 1.38154 * 120.12151 * 0.51121 * 14 13 12 16 16 C 1.38909 * 120.03951 * 359.76665 * 15 14 13 17 17 N 1.39847 * 120.04435 * 180.02562 * 16 15 14 18 18 C 1.34784 * 120.00000 * 213.32405 * 17 16 15 19 19 O 1.21591 * 119.99991 * 5.28210 * 18 17 16 20 20 C 1.47573 * 119.99849 * 185.28248 * 18 17 16 21 21 C 1.39755 * 120.08271 * 179.97438 * 20 18 17 22 22 C 1.37708 * 119.93002 * 180.02562 * 21 20 18 23 23 C 1.38974 * 120.10302 * 359.97438 * 22 21 20 24 24 O 1.35735 * 119.90780 * 180.02562 * 23 22 21 25 25 C 1.39079 * 120.17310 * 359.97438 * 23 22 21 26 26 Cl 1.73595 * 119.96533 * 180.02562 * 25 23 22 27 27 C 1.37816 * 120.06616 * 359.76695 * 25 23 22 28 28 C 1.38576 * 120.01355 * 179.97438 * 12 11 10 29 29 H 0.97000 * 119.99966 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47373 * 60.00277 * 9 7 2 31 31 H 1.08997 * 109.47107 * 299.99613 * 9 7 2 32 32 H 1.08997 * 109.46840 * 60.00114 * 10 9 7 33 33 H 1.08997 * 109.47149 * 299.99751 * 10 9 7 34 34 H 1.08000 * 119.95544 * 359.97438 * 13 12 11 35 35 H 1.08001 * 119.93786 * 180.23082 * 14 13 12 36 36 H 1.08001 * 119.98257 * 179.74030 * 15 14 13 37 37 H 0.97003 * 120.00152 * 33.32027 * 17 16 15 38 38 H 1.08003 * 120.03428 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.94270 * 180.02562 * 22 21 20 40 40 H 0.96701 * 113.99721 * 90.00270 * 24 23 22 41 41 H 1.07999 * 120.04836 * 180.25646 * 27 25 23 42 42 H 1.07996 * 120.06743 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5307 -4.8995 0.0011 12 6 2.2710 -6.0393 0.0007 13 6 3.6571 -5.9672 -0.0061 14 6 4.4111 -7.1251 -0.0012 15 6 3.7881 -8.3581 -0.0002 16 6 2.4012 -8.4365 0.0008 17 7 1.7705 -9.6846 0.0024 18 6 0.5956 -9.8468 -0.6380 19 8 0.1315 -8.9363 -1.2968 20 6 -0.1275 -11.1295 -0.5395 21 6 -1.3461 -11.2993 -1.2023 22 6 -2.0185 -12.4974 -1.1078 23 6 -1.4869 -13.5376 -0.3549 24 8 -2.1527 -14.7169 -0.2649 25 6 -0.2740 -13.3735 0.3056 26 17 0.3855 -14.6766 1.2440 27 6 0.4075 -12.1793 0.2115 28 6 1.6422 -7.2742 0.0018 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 2.8719 -3.6043 0.8905 33 1 2.8719 -3.6043 -0.8894 34 1 4.1470 -5.0047 -0.0114 35 1 5.4895 -7.0660 -0.0027 36 1 4.3797 -9.2617 -0.0005 37 1 2.1785 -10.4337 0.4643 38 1 -1.7601 -10.4918 -1.7880 39 1 -2.9600 -12.6290 -1.6202 40 1 -1.9165 -15.3554 -0.9517 41 1 1.3514 -12.0537 0.7211 42 1 0.5638 -7.3323 0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080392855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:10 Heat of formation + Delta-G solvation = -93.833785 kcal Electronic energy + Delta-G solvation = -27475.376501 eV Core-core repulsion = 23217.840293 eV Total energy + Delta-G solvation = -4257.536207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02712 -41.00231 -40.29248 -38.55574 -37.73462 -37.43117 -35.89537 -35.39042 -32.61216 -32.29488 -31.65404 -30.80290 -29.90472 -27.02376 -25.49689 -24.25965 -23.78570 -23.56820 -22.42006 -21.48138 -20.01307 -19.59768 -19.02793 -18.36590 -17.59301 -17.07509 -16.96118 -16.89699 -16.67907 -16.59916 -16.51942 -16.38054 -15.87141 -15.42471 -14.95180 -14.55277 -14.51509 -14.34083 -14.28539 -14.19960 -13.71072 -13.37742 -13.31939 -13.21681 -12.74250 -12.64862 -12.60778 -12.54513 -12.31072 -12.20547 -11.81968 -11.70987 -11.60719 -11.44724 -11.32639 -11.09450 -10.62055 -10.18165 -9.85549 -9.44895 -9.04087 -8.26481 -6.41005 -0.61605 -0.05080 0.26327 0.47265 0.95307 1.40714 1.45444 1.50361 1.53376 1.75891 2.28502 2.43774 2.51879 2.81794 2.92953 3.07603 3.39930 3.59477 3.87934 3.90056 4.06361 4.16083 4.19890 4.22773 4.23854 4.26645 4.41127 4.53258 4.57218 4.65675 4.71993 4.74795 4.97444 5.04905 5.23141 5.24956 5.30710 5.37314 5.39581 5.44830 5.50232 5.67387 5.87540 6.06092 6.24603 6.54953 6.63146 6.73698 6.92441 7.29231 8.86619 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.001606 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.859749 B =17430.815165 C =18483.230858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.345 6.345 12 C 0.124 3.876 13 C -0.232 4.232 14 C -0.051 4.051 15 C -0.172 4.172 16 C 0.177 3.823 17 N -0.651 5.651 18 C 0.556 3.444 19 O -0.551 6.551 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.136 4.136 23 C 0.154 3.846 24 O -0.492 6.492 25 C -0.083 4.083 26 Cl -0.045 7.045 27 C -0.051 4.051 28 C -0.185 4.185 29 H 0.267 0.733 30 H -0.006 1.006 31 H -0.003 1.003 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.430 0.570 38 H 0.141 0.859 39 H 0.169 0.831 40 H 0.419 0.581 41 H 0.165 0.835 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -35.986 -0.227 36.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.092 0.908 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.260 6.260 12 C 0.078 3.922 13 C -0.251 4.251 14 C -0.070 4.070 15 C -0.192 4.192 16 C 0.083 3.917 17 N -0.298 5.298 18 C 0.346 3.654 19 O -0.429 6.429 20 C -0.148 4.148 21 C -0.062 4.062 22 C -0.155 4.155 23 C 0.108 3.892 24 O -0.307 6.307 25 C -0.110 4.110 26 Cl -0.016 7.016 27 C -0.070 4.070 28 C -0.206 4.206 29 H 0.075 0.925 30 H 0.013 0.987 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.152 0.848 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.271 0.729 38 H 0.159 0.841 39 H 0.186 0.814 40 H 0.281 0.719 41 H 0.183 0.817 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.533 -35.147 -0.117 35.438 hybrid contribution 0.156 0.659 -0.143 0.692 sum 4.689 -34.487 -0.260 34.806 Atomic orbital electron populations 1.70129 1.08180 1.28306 1.50530 1.26100 0.95842 1.03871 0.94100 0.85292 0.78058 0.76920 0.79507 1.18748 1.20856 1.18645 1.21372 0.93920 0.90831 1.52286 0.90786 1.18985 0.94629 0.91653 0.95803 1.22903 0.95372 0.79902 1.00782 1.86101 1.37806 1.13942 1.88116 1.19239 0.91248 0.86245 0.95441 1.21555 0.91833 1.01646 1.10103 1.21154 1.01269 0.90124 0.94410 1.21138 0.91020 0.99993 1.07030 1.17367 0.91979 0.83742 0.98627 1.43201 1.22102 1.11101 1.53411 1.18619 0.80671 0.87861 0.78202 1.90887 1.67316 1.43747 1.40926 1.19607 0.97899 0.93039 1.04248 1.21391 0.92148 0.97644 0.95006 1.21576 1.02148 0.91936 0.99805 1.18531 0.88434 0.88354 0.93897 1.84744 1.64738 1.23914 1.57282 1.21319 0.95746 0.92114 1.01830 1.98401 1.84981 1.47373 1.70844 1.21246 1.00179 0.89655 0.95953 1.20235 1.00286 0.89884 1.10241 0.92460 0.98720 0.98483 0.91640 0.91980 0.84850 0.81488 0.81227 0.72875 0.84072 0.81403 0.71904 0.81745 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.29 21.44 0.28 -57.84 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.87 4.68 71.99 0.34 4.21 16 11 O -0.35 -16.00 10.13 -92.51 -0.94 -16.94 16 12 C 0.12 4.74 6.68 22.49 0.15 4.89 16 13 C -0.23 -7.02 9.04 22.39 0.20 -6.82 16 14 C -0.05 -1.09 10.03 22.24 0.22 -0.87 16 15 C -0.17 -3.27 9.96 22.41 0.22 -3.04 16 16 C 0.18 4.49 6.27 38.16 0.24 4.73 16 17 N -0.65 -12.19 5.28 -306.35 -1.62 -13.81 16 18 C 0.56 13.04 7.50 86.71 0.65 13.69 16 19 O -0.55 -18.57 14.03 -4.00 -0.06 -18.63 16 20 C -0.14 -2.40 5.87 -20.09 -0.12 -2.52 16 21 C -0.04 -0.67 9.58 22.51 0.22 -0.46 16 22 C -0.14 -1.51 9.97 22.32 0.22 -1.29 16 23 C 0.15 1.69 6.70 22.65 0.15 1.84 16 24 O -0.49 -4.12 12.94 -90.58 -1.17 -5.29 16 25 C -0.08 -0.95 6.32 22.37 0.14 -0.81 16 26 Cl -0.04 -0.49 28.49 -2.72 -0.08 -0.57 16 27 C -0.05 -0.58 9.31 22.53 0.21 -0.37 16 28 C -0.19 -6.55 8.59 22.49 0.19 -6.36 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.07 2.76 7.67 -2.39 -0.02 2.74 16 33 H 0.06 2.66 7.65 -2.39 -0.02 2.64 16 34 H 0.13 3.92 6.29 -2.91 -0.02 3.90 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.43 4.01 6.85 -92.71 -0.64 3.37 16 38 H 0.14 2.47 7.64 -2.91 -0.02 2.45 16 39 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.42 -0.42 9.06 -74.06 -0.67 -1.09 16 41 H 0.17 0.91 6.41 -2.91 -0.02 0.89 16 42 H 0.11 4.49 6.42 -2.91 -0.02 4.48 16 Total: -1.00 -81.85 379.94 2.14 -79.71 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -0.20 Total: 9.62 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 3.90 Total: -22.36 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.33 Total: -71.64 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.17 Total: -40.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -81.85 2.14 -79.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080392855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.127 kcal (2) G-P(sol) polarization free energy of solvation -81.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds