Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46842 * 2 1 4 4 C 1.50705 * 109.47161 * 119.99586 * 2 1 3 5 5 O 1.21272 * 119.99958 * 103.67330 * 4 2 1 6 6 N 1.34780 * 119.99652 * 283.68016 * 4 2 1 7 7 C 1.46497 * 120.00703 * 359.97438 * 6 4 2 8 8 C 1.46505 * 119.99590 * 179.97438 * 6 4 2 9 9 C 1.50706 * 109.46843 * 89.99767 * 8 6 4 10 10 H 1.07994 * 120.00031 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99756 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99968 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99915 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46776 * 90.00256 * 13 11 9 15 15 H 1.48501 * 109.47050 * 209.99737 * 13 11 9 16 16 H 1.48495 * 109.47711 * 330.00302 * 13 11 9 17 17 N 1.46894 * 109.47590 * 239.99584 * 2 1 3 18 18 C 1.46949 * 111.00107 * 312.29414 * 17 2 1 19 19 C 1.53048 * 109.36590 * 183.18767 * 18 17 2 20 20 N 1.46958 * 109.36568 * 301.59360 * 19 18 17 21 21 C 1.46898 * 111.00461 * 183.18864 * 20 19 18 22 22 C 1.50695 * 109.47400 * 170.00023 * 21 20 19 23 23 C 1.38290 * 119.96859 * 89.99677 * 22 21 20 24 24 C 1.38250 * 120.10977 * 180.02562 * 23 22 21 25 25 C 1.38166 * 120.05703 * 359.96144 * 24 23 22 26 26 C 1.38719 * 119.94284 * 0.02562 * 25 24 23 27 27 O 1.35899 * 120.05585 * 180.02562 * 26 25 24 28 28 C 1.38117 * 119.97521 * 269.72633 * 22 21 20 29 29 C 1.46958 * 110.87785 * 59.31810 * 20 19 18 30 30 C 1.46958 * 110.99732 * 76.08910 * 17 2 1 31 31 H 1.09004 * 109.46842 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47387 * 299.99937 * 1 2 3 33 33 H 1.08994 * 109.47284 * 60.00512 * 1 2 3 34 34 H 1.09001 * 109.46925 * 89.99955 * 7 6 4 35 35 H 1.08993 * 109.47575 * 210.00454 * 7 6 4 36 36 H 1.09004 * 109.46577 * 330.00830 * 7 6 4 37 37 H 1.08991 * 109.47156 * 209.99605 * 8 6 4 38 38 H 1.08993 * 109.47415 * 330.00252 * 8 6 4 39 39 H 0.97000 * 120.00061 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.49495 * 63.21661 * 18 17 2 41 41 H 1.09006 * 109.50704 * 303.16102 * 18 17 2 42 42 H 1.09004 * 109.48842 * 181.63016 * 19 18 17 43 43 H 1.09002 * 109.49390 * 61.56570 * 19 18 17 44 44 H 1.09000 * 109.47020 * 49.99917 * 21 20 19 45 45 H 1.09001 * 109.47002 * 290.00527 * 21 20 19 46 46 H 1.08003 * 119.94756 * 359.97438 * 23 22 21 47 47 H 1.07997 * 119.97257 * 179.97438 * 24 23 22 48 48 H 1.07991 * 120.02981 * 180.02562 * 25 24 23 49 49 H 0.96694 * 113.99741 * 90.00452 * 27 26 25 50 50 H 1.08008 * 120.02679 * 0.02562 * 28 22 21 51 51 H 1.09002 * 109.48452 * 60.64877 * 29 20 19 52 52 H 1.08998 * 109.49215 * 180.70982 * 29 20 19 53 53 H 1.09000 * 109.49079 * 296.77991 * 30 17 2 54 54 H 1.08998 * 109.49101 * 56.82736 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4685 -1.8386 1.1438 6 7 1.9967 -0.0917 2.4275 7 6 1.4702 1.2714 2.5323 8 6 2.4845 -0.7825 3.6238 9 6 3.9537 -0.4987 3.8036 10 1 4.4720 0.1332 3.0977 11 6 4.6358 -1.0452 4.8700 12 7 5.9178 -0.7972 5.0273 13 14 3.7388 -2.1365 6.0922 14 1 3.8125 -3.5495 5.6411 15 1 4.3743 -2.0097 7.4284 16 1 2.3166 -1.7181 6.1787 17 7 2.0197 -0.6925 -1.1993 18 6 1.3250 -1.9735 -1.3884 19 6 1.9175 -2.6984 -2.5991 20 7 1.7821 -1.8485 -3.7902 21 6 2.2719 -2.5409 -4.9896 22 6 1.8964 -1.7490 -6.2155 23 6 2.7568 -0.7828 -6.7040 24 6 2.4151 -0.0542 -7.8281 25 6 1.2129 -0.2903 -8.4668 26 6 0.3482 -1.2592 -7.9789 27 8 -0.8346 -1.4937 -8.6056 28 6 0.6959 -1.9926 -6.8534 29 6 2.4769 -0.5673 -3.6012 30 6 1.8843 0.1575 -2.3904 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 0.3980 1.2329 2.7248 35 1 1.9679 1.7912 3.3507 36 1 1.6528 1.8041 1.5989 37 1 1.9366 -0.4281 4.4968 38 1 2.3331 -1.8559 3.5107 39 1 6.3977 -1.1819 5.7773 40 1 0.2640 -1.7903 -1.5577 41 1 1.4500 -2.5903 -0.4983 42 1 1.3843 -3.6356 -2.7586 43 1 2.9722 -2.9060 -2.4184 44 1 1.8223 -3.5323 -5.0458 45 1 3.3564 -2.6363 -4.9367 46 1 3.6969 -0.5965 -6.2061 47 1 3.0885 0.7001 -8.2075 48 1 0.9465 0.2788 -9.3451 49 1 -0.7863 -2.1674 -9.2975 50 1 0.0260 -2.7500 -6.4738 51 1 3.5379 -0.7507 -3.4319 52 1 2.3516 0.0491 -4.4913 53 1 0.8297 0.3650 -2.5712 54 1 2.4172 1.0948 -2.2308 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081010826.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -46.540699 kcal Electronic energy + Delta-G solvation = -33000.410122 eV Core-core repulsion = 28744.007567 eV Total energy + Delta-G solvation = -4256.402555 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43093 -40.78351 -39.69467 -37.94039 -36.74014 -36.43205 -34.71694 -33.16874 -32.03331 -31.53274 -30.63422 -30.03146 -28.04503 -27.42319 -25.99226 -24.88796 -24.66137 -23.47561 -23.11912 -22.10966 -20.57612 -19.80555 -19.13009 -18.96232 -18.00733 -17.53302 -17.29554 -16.87544 -16.74259 -16.46374 -16.23066 -16.10473 -15.79768 -15.58544 -15.49303 -15.34228 -14.85137 -14.71072 -14.60495 -14.44245 -13.96724 -13.83312 -13.64059 -13.45458 -13.27916 -13.25495 -13.15321 -13.00587 -12.92221 -12.69553 -12.68892 -12.50988 -12.40549 -12.30757 -12.04340 -11.97406 -11.84279 -11.73587 -11.70200 -11.32883 -10.82949 -10.41782 -9.82344 -9.58298 -9.40101 -9.33473 -9.12434 -8.33507 -6.38246 0.28540 0.40076 1.32041 1.36378 1.44819 1.83589 2.25928 2.31045 2.58240 2.98108 3.00860 3.08111 3.31978 3.65256 3.77523 3.84354 3.96109 4.00341 4.10819 4.16436 4.22244 4.24692 4.31957 4.35699 4.41151 4.44534 4.45435 4.58469 4.61976 4.66015 4.69169 4.70609 4.78243 4.84921 4.86926 4.91964 4.93569 4.96561 4.98009 5.01792 5.07569 5.10414 5.21027 5.46711 5.47633 5.49001 5.61382 5.64631 5.86426 5.92619 5.95840 6.11250 6.19712 6.26157 6.63096 6.75747 6.88457 7.22626 7.49837 8.83609 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.001890 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.660934 B =14808.363810 C =15050.645057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.117 0.883 4 C 0.505 3.495 5 O -0.577 6.577 6 N -0.608 5.608 7 C 0.076 3.924 8 C 0.226 3.774 9 C -0.533 4.533 10 H 0.026 0.974 11 C 0.008 3.992 12 N -0.946 5.946 13 Si 0.950 3.050 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.237 1.237 17 N -0.541 5.541 18 C 0.059 3.941 19 C 0.066 3.934 20 N -0.533 5.533 21 C 0.093 3.907 22 C -0.064 4.064 23 C -0.130 4.130 24 C -0.103 4.103 25 C -0.154 4.154 26 C 0.095 3.905 27 O -0.513 6.513 28 C -0.136 4.136 29 C 0.059 3.941 30 C 0.060 3.940 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.268 0.732 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.023 0.977 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.130 0.870 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.409 0.591 50 H 0.128 0.872 51 H 0.029 0.971 52 H 0.096 0.904 53 H 0.053 0.947 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 2.537 -27.263 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 H 0.134 0.866 4 C 0.293 3.707 5 O -0.457 6.457 6 N -0.340 5.340 7 C -0.066 4.066 8 C 0.103 3.897 9 C -0.572 4.572 10 H 0.044 0.956 11 C -0.190 4.190 12 N -0.586 5.586 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.200 1.200 16 H -0.160 1.160 17 N -0.266 5.266 18 C -0.069 4.069 19 C -0.062 4.062 20 N -0.257 5.257 21 C -0.034 4.034 22 C -0.064 4.064 23 C -0.149 4.149 24 C -0.121 4.121 25 C -0.172 4.172 26 C 0.051 3.949 27 O -0.326 6.326 28 C -0.155 4.155 29 C -0.069 4.069 30 C -0.068 4.068 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.147 0.853 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.267 0.733 50 H 0.146 0.854 51 H 0.047 0.953 52 H 0.114 0.886 53 H 0.071 0.929 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.980 2.350 -26.795 30.788 hybrid contribution 0.776 -0.967 0.613 1.383 sum -14.203 1.383 -26.183 29.819 Atomic orbital electron populations 1.22296 0.92774 1.03044 1.04604 1.21583 0.95955 0.98202 0.87867 0.86568 1.21137 0.77985 0.86502 0.85035 1.90570 1.47878 1.21457 1.85785 1.47934 1.61452 1.16918 1.07695 1.22020 0.99481 0.81346 1.03754 1.19295 0.92922 0.93028 0.84436 1.21562 0.94810 1.30604 1.10204 0.95606 1.25889 0.95576 0.97539 0.99967 1.70060 1.10091 1.46542 1.31955 0.85688 0.80380 0.78843 0.77842 1.20325 1.20001 1.15988 1.61910 1.57685 1.04727 1.02321 1.22216 0.95967 0.90800 0.97879 1.22081 0.99023 0.96212 0.88921 1.62242 1.56664 1.04503 1.02325 1.21059 0.98381 0.97014 0.86974 1.19611 0.94268 0.96969 0.95572 1.21291 1.00176 0.96214 0.97207 1.21272 0.96402 0.99394 0.94990 1.21649 0.94182 0.99553 1.01850 1.18604 0.85933 0.96457 0.93899 1.84785 1.28797 1.63714 1.55309 1.21358 0.96517 1.00993 0.96615 1.22218 0.95457 0.91239 0.97990 1.22237 1.00451 0.95839 0.88243 0.92691 0.89853 0.89455 0.90050 0.91607 0.89544 0.93199 0.96471 0.92334 0.93102 0.91215 0.89011 0.95871 0.89021 0.93659 0.85256 0.83487 0.84178 0.73262 0.85407 0.95266 0.88623 0.92932 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 8.20 71.98 0.59 -3.06 16 2 C 0.08 2.19 1.93 44.17 0.09 2.27 16 3 H 0.12 2.94 6.27 -2.39 -0.01 2.93 16 4 C 0.51 20.73 6.85 87.66 0.60 21.33 16 5 O -0.58 -29.31 13.84 -3.01 -0.04 -29.35 16 6 N -0.61 -24.81 2.86 -851.14 -2.43 -27.24 16 7 C 0.08 2.15 9.36 127.77 1.20 3.34 16 8 C 0.23 11.13 4.23 85.63 0.36 11.49 16 9 C -0.53 -31.98 9.94 25.60 0.25 -31.73 16 10 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 11 C 0.01 0.48 5.47 84.66 0.46 0.94 16 12 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 13 Si 0.95 45.12 27.47 68.60 1.88 47.00 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 17 N -0.54 -16.05 4.42 -874.89 -3.87 -19.92 16 18 C 0.06 1.72 4.43 86.31 0.38 2.10 16 19 C 0.07 1.67 5.61 86.31 0.48 2.15 16 20 N -0.53 -11.49 4.70 -900.29 -4.23 -15.72 16 21 C 0.09 1.66 5.12 85.56 0.44 2.10 16 22 C -0.06 -1.07 4.89 -19.88 -0.10 -1.17 16 23 C -0.13 -1.95 7.91 22.28 0.18 -1.77 16 24 C -0.10 -1.32 10.04 22.26 0.22 -1.10 16 25 C -0.15 -2.12 9.99 22.37 0.22 -1.90 16 26 C 0.10 1.52 6.71 22.51 0.15 1.67 16 27 O -0.51 -7.25 13.50 -92.41 -1.25 -8.50 16 28 C -0.14 -2.30 9.64 22.36 0.22 -2.08 16 29 C 0.06 1.27 5.25 86.31 0.45 1.72 16 30 C 0.06 1.34 5.40 86.31 0.47 1.81 16 31 H 0.05 1.33 6.39 -2.39 -0.02 1.32 16 32 H 0.08 1.57 6.48 -2.39 -0.02 1.55 16 33 H 0.09 1.51 7.02 -2.39 -0.02 1.49 16 34 H 0.08 1.74 7.45 -2.39 -0.02 1.72 16 35 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 36 H 0.09 1.96 6.02 -2.39 -0.01 1.95 16 37 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 38 H 0.02 0.91 6.85 -2.39 -0.02 0.90 16 39 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.05 1.34 6.41 -2.39 -0.02 1.32 16 41 H 0.07 2.54 5.88 -2.38 -0.01 2.53 16 42 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 1.47 7.97 -2.39 -0.02 1.45 16 45 H 0.05 0.83 8.06 -2.39 -0.02 0.81 16 46 H 0.13 1.72 7.99 -2.91 -0.02 1.70 16 47 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 48 H 0.14 1.45 8.06 -2.92 -0.02 1.43 16 49 H 0.41 1.69 9.06 -74.06 -0.67 1.02 16 50 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 51 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.10 1.77 5.95 -2.39 -0.01 1.76 16 53 H 0.05 1.08 7.02 -2.39 -0.02 1.06 16 54 H 0.09 1.78 8.02 -2.39 -0.02 1.76 16 Total: -1.00 -82.69 415.40 -2.79 -85.47 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.18 Total: 20.65 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.67 Total: 8.13 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -10.23 Total: -123.40 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.29 Total: -37.85 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -82.69 -2.79 -85.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081010826.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.931 kcal (2) G-P(sol) polarization free energy of solvation -82.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds