Wall clock time and date at job start Tue Mar 31 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47103 * 269.99604 * 3 2 1 5 5 H 1.48495 * 109.47246 * 29.99775 * 3 2 1 6 6 H 1.48507 * 109.47241 * 150.00019 * 3 2 1 7 7 C 1.39939 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00103 * 169.99432 * 7 2 1 9 9 C 1.41441 * 119.99561 * 349.99615 * 7 2 1 10 10 C 1.40791 * 120.17079 * 150.58553 * 9 7 2 11 11 C 1.37720 * 120.04030 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41097 * 359.71799 * 11 10 9 13 13 C 1.39899 * 120.35858 * 0.56036 * 12 11 10 14 14 C 1.47852 * 120.02770 * 179.71588 * 13 12 11 15 15 O 1.21556 * 120.00109 * 179.73019 * 14 13 12 16 16 N 1.34779 * 119.99826 * 359.72804 * 14 13 12 17 17 C 1.39843 * 119.99811 * 175.53808 * 16 14 13 18 18 C 1.38949 * 120.04261 * 215.24732 * 17 16 14 19 19 C 1.38130 * 120.04330 * 179.78787 * 18 17 16 20 20 C 1.38207 * 120.12424 * 0.46585 * 19 18 17 21 21 C 1.38789 * 120.08968 * 359.79145 * 20 19 18 22 22 O 1.35896 * 120.02116 * 179.97438 * 21 20 19 23 23 C 1.35692 * 117.99967 * 255.66034 * 22 21 20 24 24 C 1.39275 * 120.14143 * 185.24846 * 23 22 21 25 25 C 1.38634 * 117.92099 * 179.97438 * 24 23 22 26 26 C 1.38769 * 118.01956 * 359.97438 * 25 24 23 27 27 N 1.31821 * 119.97879 * 359.97438 * 26 25 24 28 28 N 1.28343 * 122.26079 * 359.73403 * 27 26 25 29 29 C 1.38640 * 119.95537 * 359.97432 * 21 20 19 30 30 C 1.39043 * 119.94535 * 359.44665 * 13 12 11 31 31 H 0.97003 * 120.00285 * 0.02562 * 1 2 3 32 32 H 1.07993 * 119.98194 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.78924 * 180.02562 * 11 10 9 34 34 H 1.08006 * 119.82244 * 180.30318 * 12 11 10 35 35 H 0.96998 * 120.00239 * 355.25638 * 16 14 13 36 36 H 1.08003 * 119.98007 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.94056 * 180.21149 * 19 18 17 38 38 H 1.08001 * 119.96028 * 179.76691 * 20 19 18 39 39 H 1.08003 * 121.03961 * 359.95564 * 24 23 22 40 40 H 1.07998 * 120.99405 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.00842 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.05763 * 179.97438 * 29 21 20 43 43 H 1.07993 * 120.20362 * 180.25268 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0756 -1.2191 -0.1620 9 6 1.3168 -2.4274 0.2139 10 6 1.7923 -3.6219 -0.3599 11 6 1.1169 -4.8038 -0.1509 12 6 -0.0273 -4.8285 0.6268 13 6 -0.5181 -3.6506 1.2003 14 6 -1.7449 -3.6845 2.0248 15 8 -2.1681 -2.6616 2.5269 16 7 -2.3939 -4.8495 2.2196 17 6 -3.4997 -4.8994 3.0742 18 6 -3.7283 -6.0287 3.8508 19 6 -4.8181 -6.0763 4.6982 20 6 -5.6890 -5.0054 4.7689 21 6 -5.4687 -3.8769 3.9917 22 8 -6.3262 -2.8250 4.0620 23 6 -7.2031 -2.6487 3.0416 24 6 -8.0266 -1.5258 3.0133 25 6 -8.9049 -1.3916 1.9491 26 6 -8.9091 -2.3831 0.9782 27 7 -8.0931 -3.4128 1.0849 28 7 -7.2742 -3.5393 2.0650 29 6 -4.3733 -3.8235 3.1435 30 6 0.1520 -2.4491 0.9989 31 1 -0.4851 0.8400 -0.0004 32 1 2.6872 -3.6114 -0.9643 33 1 1.4855 -5.7177 -0.5926 34 1 -0.5467 -5.7616 0.7885 35 1 -2.0966 -5.6525 1.7638 36 1 -3.0513 -6.8684 3.7946 37 1 -4.9923 -6.9535 5.3035 38 1 -6.5423 -5.0470 5.4296 39 1 -7.9826 -0.7830 3.7961 40 1 -9.5657 -0.5403 1.8774 41 1 -9.5801 -2.3106 0.1351 42 1 -4.2006 -2.9462 2.5377 43 1 -0.2209 -1.5380 1.4430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081740579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:50 Heat of formation + Delta-G solvation = 51.766651 kcal Electronic energy + Delta-G solvation = -30159.543234 eV Core-core repulsion = 25943.046336 eV Total energy + Delta-G solvation = -4216.496898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57759 -40.37238 -39.39556 -37.82656 -36.93488 -34.39176 -33.71021 -33.46425 -32.00291 -30.78694 -30.05813 -29.53532 -28.93126 -25.39884 -25.16346 -24.64698 -23.71559 -22.54217 -21.74398 -20.99800 -19.67526 -19.36662 -17.84727 -17.84050 -17.07869 -16.73914 -16.47782 -16.23219 -15.89967 -15.21999 -14.99979 -14.83016 -14.76935 -14.52126 -14.28600 -13.89034 -13.55115 -13.49956 -13.26525 -13.00252 -12.77538 -12.59762 -12.54841 -11.82810 -11.72821 -11.60055 -11.47182 -11.20159 -11.13241 -10.82068 -10.57534 -10.54911 -10.20324 -10.05492 -9.86527 -9.77543 -9.50378 -9.31650 -9.13277 -8.73923 -8.06908 -7.69815 -7.54921 -6.79033 -4.49122 0.51303 0.73624 1.06123 1.35839 2.08652 2.69881 2.75720 3.05608 3.07708 3.11035 3.33182 3.39811 3.61435 3.89033 3.91849 3.92841 4.16982 4.43421 4.55914 4.60280 4.79374 4.88228 5.08594 5.14733 5.30747 5.37584 5.44188 5.50544 5.52572 5.58694 5.79796 5.91238 5.97693 6.17032 6.25924 6.35258 6.37022 6.48725 6.63188 6.86380 6.92670 6.94782 7.15793 7.29003 7.29949 7.58434 7.62850 7.80138 7.93365 8.10314 8.43469 8.46958 8.67044 8.75587 8.77670 10.15069 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.002699 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.897317 B =10373.226580 C =12183.135615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.100 4.100 12 C -0.212 4.212 13 C -0.132 4.132 14 C 0.565 3.435 15 O -0.524 6.524 16 N -0.678 5.678 17 C 0.175 3.825 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.137 4.137 21 C 0.099 3.901 22 O -0.238 6.238 23 C 0.262 3.738 24 C -0.131 4.131 25 C -0.086 4.086 26 C 0.006 3.994 27 N -0.205 5.205 28 N -0.283 5.283 29 C -0.116 4.116 30 C -0.081 4.081 31 H 0.284 0.716 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.145 0.855 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.859 -5.904 6.148 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.118 4.118 12 C -0.232 4.232 13 C -0.136 4.136 14 C 0.357 3.643 15 O -0.400 6.400 16 N -0.324 5.324 17 C 0.080 3.920 18 C -0.165 4.165 19 C -0.107 4.107 20 C -0.156 4.156 21 C 0.057 3.943 22 O -0.140 6.140 23 C 0.078 3.922 24 C -0.161 4.161 25 C -0.115 4.115 26 C -0.161 4.161 27 N -0.048 5.048 28 N -0.138 5.138 29 C -0.137 4.137 30 C -0.101 4.101 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.193 0.807 42 H 0.163 0.837 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.643 -6.234 6.111 17.914 hybrid contribution -0.030 1.676 0.181 1.686 sum -15.674 -4.558 6.292 17.494 Atomic orbital electron populations 1.69744 1.07443 1.29614 1.35058 1.25951 0.94888 1.01502 0.92383 0.86218 0.80392 0.80388 0.79208 1.19427 1.20026 1.18438 1.19577 0.95866 0.90185 1.43322 0.90079 1.17621 0.91444 0.92608 0.88823 1.21201 1.02606 0.93429 1.05026 1.20456 0.95690 0.96835 0.98816 1.20375 1.00470 0.95156 1.07173 1.19362 0.95490 0.95992 1.02734 1.19059 0.83804 0.81870 0.79532 1.90709 1.67282 1.32859 1.49178 1.43632 1.29007 1.13581 1.46145 1.17529 0.87528 0.94647 0.92318 1.21025 0.99793 0.98629 0.97085 1.20692 0.93965 0.97830 0.98236 1.20995 1.01174 0.91652 1.01803 1.18303 0.89681 0.87035 0.99315 1.84623 1.43967 1.46269 1.39161 1.21732 0.89447 0.92207 0.88793 1.21575 0.96164 0.97207 1.01150 1.22327 0.96938 0.99720 0.92480 1.24270 0.99343 0.92195 1.00270 1.72853 0.99981 1.19262 1.12672 1.73211 1.16698 1.24344 0.99564 1.21432 0.92576 1.00234 0.99457 1.21707 0.95843 0.95679 0.96878 0.90524 0.88375 0.88623 0.89073 0.74955 0.85117 0.84916 0.85520 0.82389 0.82418 0.80682 0.83710 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.98 10.84 55.55 0.60 -20.38 16 2 C 0.07 1.77 5.26 -17.34 -0.09 1.68 16 3 Si 0.91 18.74 29.57 -169.99 -5.03 13.72 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -11.95 9.06 -37.73 -0.34 -12.29 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.10 2.54 5.54 -106.87 -0.59 1.95 16 10 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.46 16 12 C -0.21 -4.32 9.55 -38.91 -0.37 -4.70 16 13 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 14 C 0.56 12.35 7.61 -12.33 -0.09 12.25 16 15 O -0.52 -13.00 13.80 5.32 0.07 -12.92 16 16 N -0.68 -11.71 5.28 -10.73 -0.06 -11.77 16 17 C 0.18 2.89 6.29 -83.74 -0.53 2.37 16 18 C -0.14 -1.86 9.96 -39.36 -0.39 -2.25 16 19 C -0.09 -1.01 10.03 -39.63 -0.40 -1.41 16 20 C -0.14 -1.77 9.98 -39.39 -0.39 -2.16 16 21 C 0.10 1.57 5.12 -39.23 -0.20 1.37 16 22 O -0.24 -3.62 9.98 -2.96 -0.03 -3.65 16 23 C 0.26 3.70 7.46 -16.94 -0.13 3.57 16 24 C -0.13 -1.33 10.16 -39.05 -0.40 -1.72 16 25 C -0.09 -0.67 10.20 -39.24 -0.40 -1.07 16 26 C 0.01 0.05 11.31 -17.36 -0.20 -0.14 16 27 N -0.20 -2.87 11.49 30.56 0.35 -2.52 16 28 N -0.28 -4.43 10.38 30.51 0.32 -4.12 16 29 C -0.12 -2.10 8.36 -39.24 -0.33 -2.43 16 30 C -0.08 -2.13 8.20 -38.44 -0.32 -2.44 16 31 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 32 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.09 1.51 6.39 -52.48 -0.34 1.17 16 35 H 0.41 5.91 6.85 -40.82 -0.28 5.63 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.15 3.06 6.26 -52.48 -0.33 2.73 16 43 H 0.14 3.90 5.82 -52.49 -0.31 3.59 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -32.69 378.35 -8.80 -41.50 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -4.18 Total: 13.12 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -6.56 Total: -18.68 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 1.21 Total: -38.78 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.04 Total: -16.57 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.69 -8.80 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081740579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.264 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds