Wall clock time and date at job start Tue Mar 31 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47103 * 269.99604 * 3 2 1 5 5 H 1.48495 * 109.47246 * 29.99775 * 3 2 1 6 6 H 1.48507 * 109.47241 * 150.00019 * 3 2 1 7 7 C 1.39939 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00103 * 169.99432 * 7 2 1 9 9 C 1.41441 * 119.99561 * 349.99615 * 7 2 1 10 10 C 1.40791 * 120.17079 * 150.58553 * 9 7 2 11 11 C 1.37720 * 120.04030 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41097 * 359.71799 * 11 10 9 13 13 C 1.39899 * 120.35858 * 0.56036 * 12 11 10 14 14 C 1.47852 * 120.02770 * 179.71588 * 13 12 11 15 15 O 1.21556 * 120.00109 * 179.73019 * 14 13 12 16 16 N 1.34779 * 119.99826 * 359.72804 * 14 13 12 17 17 C 1.39843 * 119.99811 * 175.53808 * 16 14 13 18 18 C 1.38949 * 120.04261 * 215.24732 * 17 16 14 19 19 C 1.38130 * 120.04330 * 179.78787 * 18 17 16 20 20 C 1.38207 * 120.12424 * 0.46585 * 19 18 17 21 21 C 1.38789 * 120.08968 * 359.79145 * 20 19 18 22 22 O 1.35896 * 120.02116 * 179.97438 * 21 20 19 23 23 C 1.35692 * 117.99967 * 255.66034 * 22 21 20 24 24 C 1.39275 * 120.14143 * 185.24846 * 23 22 21 25 25 C 1.38634 * 117.92099 * 179.97438 * 24 23 22 26 26 C 1.38769 * 118.01956 * 359.97438 * 25 24 23 27 27 N 1.31821 * 119.97879 * 359.97438 * 26 25 24 28 28 N 1.28343 * 122.26079 * 359.73403 * 27 26 25 29 29 C 1.38640 * 119.95537 * 359.97432 * 21 20 19 30 30 C 1.39043 * 119.94535 * 359.44665 * 13 12 11 31 31 H 0.97003 * 120.00285 * 0.02562 * 1 2 3 32 32 H 1.07993 * 119.98194 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.78924 * 180.02562 * 11 10 9 34 34 H 1.08006 * 119.82244 * 180.30318 * 12 11 10 35 35 H 0.96998 * 120.00239 * 355.25638 * 16 14 13 36 36 H 1.08003 * 119.98007 * 0.02562 * 18 17 16 37 37 H 1.07994 * 119.94056 * 180.21149 * 19 18 17 38 38 H 1.08001 * 119.96028 * 179.76691 * 20 19 18 39 39 H 1.08003 * 121.03961 * 359.95564 * 24 23 22 40 40 H 1.07998 * 120.99405 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.00842 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.05763 * 179.97438 * 29 21 20 43 43 H 1.07993 * 120.20362 * 180.25268 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0756 -1.2191 -0.1620 9 6 1.3168 -2.4274 0.2139 10 6 1.7923 -3.6219 -0.3599 11 6 1.1169 -4.8038 -0.1509 12 6 -0.0273 -4.8285 0.6268 13 6 -0.5181 -3.6506 1.2003 14 6 -1.7449 -3.6845 2.0248 15 8 -2.1681 -2.6616 2.5269 16 7 -2.3939 -4.8495 2.2196 17 6 -3.4997 -4.8994 3.0742 18 6 -3.7283 -6.0287 3.8508 19 6 -4.8181 -6.0763 4.6982 20 6 -5.6890 -5.0054 4.7689 21 6 -5.4687 -3.8769 3.9917 22 8 -6.3262 -2.8250 4.0620 23 6 -7.2031 -2.6487 3.0416 24 6 -8.0266 -1.5258 3.0133 25 6 -8.9049 -1.3916 1.9491 26 6 -8.9091 -2.3831 0.9782 27 7 -8.0931 -3.4128 1.0849 28 7 -7.2742 -3.5393 2.0650 29 6 -4.3733 -3.8235 3.1435 30 6 0.1520 -2.4491 0.9989 31 1 -0.4851 0.8400 -0.0004 32 1 2.6872 -3.6114 -0.9643 33 1 1.4855 -5.7177 -0.5926 34 1 -0.5467 -5.7616 0.7885 35 1 -2.0966 -5.6525 1.7638 36 1 -3.0513 -6.8684 3.7946 37 1 -4.9923 -6.9535 5.3035 38 1 -6.5423 -5.0470 5.4296 39 1 -7.9826 -0.7830 3.7961 40 1 -9.5657 -0.5403 1.8774 41 1 -9.5801 -2.3106 0.1351 42 1 -4.2006 -2.9462 2.5377 43 1 -0.2209 -1.5380 1.4430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081740579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:49 Heat of formation + Delta-G solvation = 29.693689 kcal Electronic energy + Delta-G solvation = -30160.500389 eV Core-core repulsion = 25943.046336 eV Total energy + Delta-G solvation = -4217.454053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.53495 -41.70417 -40.64403 -39.26371 -38.49158 -35.92169 -35.47549 -34.28008 -32.93373 -32.41175 -31.39783 -31.18787 -30.26052 -27.26763 -26.07771 -25.54013 -25.21860 -23.65718 -23.14181 -22.72776 -21.30626 -20.51125 -19.55211 -18.76234 -18.21808 -17.87587 -17.66435 -17.45701 -17.20937 -16.92712 -16.50148 -16.24221 -16.04048 -15.72989 -15.43243 -15.21976 -15.10691 -14.69991 -14.47986 -14.32774 -14.22998 -14.09486 -13.74534 -13.51494 -12.99208 -12.83138 -12.80749 -12.67881 -12.58566 -12.42922 -12.23938 -11.93174 -11.57778 -11.50789 -11.34334 -11.15279 -10.89662 -10.73880 -10.42618 -9.84923 -9.63285 -9.40133 -9.21376 -8.64530 -6.44983 -0.27369 -0.17201 -0.01874 0.12929 0.43767 0.96346 1.34033 1.43131 1.49483 1.71563 1.96021 1.98114 2.17404 2.47463 2.70891 2.80167 3.02388 3.37344 3.62289 3.73380 3.76311 3.86607 3.96067 4.03607 4.09392 4.13418 4.32829 4.39556 4.44462 4.53370 4.59293 4.71150 4.81009 4.85089 5.03190 5.10486 5.17447 5.18380 5.21655 5.26578 5.30343 5.37355 5.45596 5.72068 5.79297 5.84714 6.00822 6.19902 6.22904 6.36836 6.56806 6.84830 6.89401 7.08165 7.57649 8.31224 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.002699 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.897317 B =10373.226580 C =12183.135615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.497 4.497 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.205 4.205 11 C -0.097 4.097 12 C -0.189 4.189 13 C -0.143 4.143 14 C 0.561 3.439 15 O -0.567 6.567 16 N -0.656 5.656 17 C 0.145 3.855 18 C -0.131 4.131 19 C -0.073 4.073 20 C -0.133 4.133 21 C 0.085 3.915 22 O -0.252 6.252 23 C 0.232 3.768 24 C -0.138 4.138 25 C -0.064 4.064 26 C 0.011 3.989 27 N -0.251 5.251 28 N -0.324 5.324 29 C -0.147 4.147 30 C -0.120 4.120 31 H 0.283 0.717 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.427 0.573 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.211 0.789 41 H 0.216 0.784 42 H 0.096 0.904 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 -8.469 6.617 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.527 4.527 8 H 0.104 0.896 9 C 0.063 3.937 10 C -0.225 4.225 11 C -0.115 4.115 12 C -0.208 4.208 13 C -0.146 4.146 14 C 0.353 3.647 15 O -0.447 6.447 16 N -0.303 5.303 17 C 0.050 3.950 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.152 4.152 21 C 0.042 3.958 22 O -0.156 6.156 23 C 0.048 3.952 24 C -0.167 4.167 25 C -0.092 4.092 26 C -0.156 4.156 27 N -0.093 5.093 28 N -0.178 5.178 29 C -0.168 4.168 30 C -0.141 4.141 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.268 0.732 36 H 0.186 0.814 37 H 0.200 0.800 38 H 0.170 0.830 39 H 0.200 0.800 40 H 0.228 0.772 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.980 -8.882 6.566 20.257 hybrid contribution 0.154 2.293 0.040 2.298 sum -16.826 -6.589 6.606 19.240 Atomic orbital electron populations 1.69881 1.09189 1.30262 1.37153 1.26869 0.95505 1.05011 0.91435 0.85142 0.78951 0.75626 0.79649 1.18196 1.19976 1.17645 1.19866 0.96226 0.91243 1.45346 0.89636 1.17966 0.91974 0.94107 0.89690 1.21528 1.03093 0.93437 1.04404 1.20971 0.94975 0.97648 0.97923 1.20930 0.99825 0.95730 1.04329 1.19639 0.95817 0.96196 1.02952 1.18984 0.83793 0.82677 0.79293 1.90696 1.68276 1.34767 1.50931 1.43267 1.28667 1.12420 1.45970 1.17818 0.87315 0.95909 0.93913 1.21428 1.00460 0.97757 0.95478 1.21286 0.92138 0.98513 0.97193 1.21422 1.02112 0.90747 1.00871 1.18561 0.89359 0.88297 0.99563 1.84567 1.44355 1.46682 1.39981 1.22135 0.90406 0.93823 0.88833 1.22053 0.95671 0.96306 1.02670 1.22933 0.95870 1.00184 0.90252 1.25016 0.98092 0.91051 1.01431 1.72733 1.01555 1.21961 1.13024 1.73053 1.18167 1.26015 1.00570 1.21215 0.94993 0.99684 1.00892 1.21478 0.97669 0.95795 0.99123 0.90624 0.86884 0.83804 0.84154 0.73179 0.81419 0.80029 0.82962 0.79993 0.77187 0.76780 0.88547 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.03 10.84 21.82 0.24 -47.79 16 2 C 0.02 1.32 5.26 85.26 0.45 1.77 16 3 Si 0.99 40.36 29.57 68.60 2.03 42.39 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.26 9.06 23.47 0.21 -27.05 16 8 H 0.09 4.39 7.87 -2.91 -0.02 4.37 16 9 C 0.06 3.54 5.54 -21.32 -0.12 3.42 16 10 C -0.20 -9.46 9.78 22.77 0.22 -9.24 16 11 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 12 C -0.19 -7.32 9.55 22.70 0.22 -7.10 16 13 C -0.14 -6.85 5.87 -20.14 -0.12 -6.97 16 14 C 0.56 25.88 7.61 86.79 0.66 26.54 16 15 O -0.57 -30.95 13.80 -3.89 -0.05 -31.00 16 16 N -0.66 -22.82 5.28 -306.14 -1.62 -24.44 16 17 C 0.14 4.84 6.29 38.16 0.24 5.08 16 18 C -0.13 -3.02 9.96 22.41 0.22 -2.79 16 19 C -0.07 -1.42 10.03 22.24 0.22 -1.20 16 20 C -0.13 -3.25 9.98 22.39 0.22 -3.02 16 21 C 0.08 2.81 5.12 22.50 0.12 2.92 16 22 O -0.25 -8.24 9.98 -33.51 -0.33 -8.57 16 23 C 0.23 6.93 7.46 84.86 0.63 7.57 16 24 C -0.14 -2.73 10.16 22.61 0.23 -2.50 16 25 C -0.06 -0.85 10.20 22.49 0.23 -0.62 16 26 C 0.01 0.20 11.31 84.82 0.96 1.16 16 27 N -0.25 -7.24 11.49 -57.21 -0.66 -7.90 16 28 N -0.32 -10.76 10.38 -170.19 -1.77 -12.53 16 29 C -0.15 -5.73 8.36 22.49 0.19 -5.54 16 30 C -0.12 -6.77 8.20 23.01 0.19 -6.58 16 31 H 0.28 15.08 8.30 -92.71 -0.77 14.31 16 32 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.14 4.01 6.39 -2.91 -0.02 3.99 16 35 H 0.43 11.41 6.85 -92.71 -0.64 10.77 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.10 4.64 6.26 -2.91 -0.02 4.63 16 43 H 0.10 6.22 5.82 -2.91 -0.02 6.21 16 Total: -1.00 -84.65 378.35 3.49 -81.16 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.45 Total: 36.40 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 5.20 Total: -27.72 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.80 Total: -92.65 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.39 Total: -39.58 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -84.65 3.49 -81.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081740579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.851 kcal (2) G-P(sol) polarization free energy of solvation -84.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds