Wall clock time and date at job start Tue Mar 31 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21275 * 120.00282 * 2 1 4 4 N 1.34783 * 119.99484 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00193 * 5.03674 * 4 2 1 6 6 C 1.50699 * 109.47317 * 89.99992 * 5 4 2 7 7 N 1.29948 * 126.28647 * 90.02381 * 6 5 4 8 8 O 1.21301 * 110.25093 * 179.97438 * 7 6 5 9 9 C 1.33641 * 109.81151 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.55092 * 180.02562 * 9 8 7 11 11 N 1.31133 * 106.89604 * 359.77707 * 9 8 7 12 12 C 1.46496 * 119.99679 * 185.03739 * 4 2 1 13 13 H 1.08993 * 110.27728 * 180.64793 * 12 4 2 14 14 C 1.54599 * 110.31254 * 58.55397 * 12 4 2 15 15 C 1.55092 * 102.84917 * 219.18790 * 14 12 4 16 16 N 1.48534 * 103.28593 * 37.30567 * 15 14 12 17 17 C 1.46901 * 110.99985 * 200.33119 * 16 15 14 18 18 C 1.52998 * 109.47072 * 287.39800 * 17 16 15 19 19 H 1.08998 * 109.47184 * 55.00024 * 18 17 16 20 20 C 1.47201 * 109.47355 * 294.99675 * 18 17 16 21 21 N 5.76629 * 128.45605 * 346.34379 * 2 1 3 22 22 C 1.53004 * 109.46892 * 175.00253 * 18 17 16 23 23 C 1.50699 * 109.47206 * 185.00164 * 22 18 17 24 24 H 1.08006 * 120.00107 * 359.97438 * 23 22 18 25 25 C 1.37873 * 120.00123 * 179.97438 * 23 22 18 26 26 N 1.31514 * 120.00280 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00148 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46985 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.47358 * 210.00225 * 27 25 23 30 30 H 1.48498 * 109.47018 * 330.00388 * 27 25 23 31 31 C 1.47903 * 105.81770 * 320.84877 * 16 15 14 32 32 H 1.09007 * 109.47302 * 264.78747 * 1 2 3 33 33 H 1.09003 * 109.47630 * 144.78616 * 1 2 3 34 34 H 1.09005 * 109.47339 * 24.78288 * 1 2 3 35 35 H 1.09005 * 109.47016 * 209.99832 * 5 4 2 36 36 H 1.09004 * 109.47514 * 329.99670 * 5 4 2 37 37 H 1.09000 * 109.47631 * 359.97438 * 10 9 8 38 38 H 1.09007 * 109.47021 * 119.98613 * 10 9 8 39 39 H 1.08998 * 109.47393 * 239.98074 * 10 9 8 40 40 H 1.09000 * 110.72190 * 337.49311 * 14 12 4 41 41 H 1.09001 * 110.71715 * 100.76657 * 14 12 4 42 42 H 1.09008 * 110.59383 * 278.87112 * 15 14 12 43 43 H 1.09003 * 110.82778 * 155.85244 * 15 14 12 44 44 H 1.09004 * 109.46942 * 47.39897 * 17 16 15 45 45 H 1.08995 * 109.46812 * 167.39552 * 17 16 15 46 46 H 1.09005 * 109.46969 * 304.99799 * 22 18 17 47 47 H 1.09000 * 109.47466 * 65.00017 * 22 18 17 48 48 H 0.96995 * 120.00539 * 180.02562 * 26 25 23 49 49 H 1.09000 * 109.91256 * 265.97487 * 31 16 15 50 50 H 1.08998 * 110.07920 * 144.77815 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4525 -2.4334 -0.1125 6 6 1.3108 -2.8046 -1.5661 7 7 2.1436 -3.5192 -2.2621 8 8 1.7442 -3.6388 -3.4012 9 6 0.5831 -2.9927 -3.5442 10 6 -0.2417 -2.8970 -4.8019 11 7 0.2960 -2.4625 -2.3798 12 6 3.6415 -1.1699 0.1109 13 1 4.0207 -2.1913 0.0828 14 6 4.0813 -0.4700 1.4173 15 6 5.3387 0.3240 0.9769 16 7 4.9882 0.7874 -0.3901 17 6 6.1942 1.1352 -1.1534 18 6 6.7755 2.4458 -0.6192 19 1 6.9507 2.3553 0.4528 20 6 5.8260 3.5422 -0.8705 21 7 5.0931 4.3878 -1.0661 22 6 8.0979 2.7438 -1.3288 23 6 8.7311 3.9673 -0.7180 24 1 8.2393 4.4813 0.0947 25 6 9.9382 4.4307 -1.1967 26 7 10.5368 3.8052 -2.1867 27 14 10.7227 5.9478 -0.4401 28 1 11.6065 5.5407 0.6817 29 1 11.5244 6.6563 -1.4699 30 1 9.6609 6.8523 0.0694 31 6 4.2655 -0.3367 -1.0239 32 1 -0.3634 -0.0934 1.0235 33 1 -0.3634 -0.8396 -0.5926 34 1 -0.3634 0.9330 -0.4308 35 1 2.0021 -3.2162 0.4105 36 1 0.4635 -2.3244 0.3328 37 1 0.2540 -3.4436 -5.6041 38 1 -1.2272 -3.3274 -4.6237 39 1 -0.3486 -1.8505 -5.0875 40 1 3.3038 0.2058 1.7735 41 1 4.3351 -1.2045 2.1817 42 1 6.2130 -0.3265 0.9503 43 1 5.5123 1.1729 1.6382 44 1 6.9327 0.3405 -1.0480 45 1 5.9363 1.2543 -2.2057 46 1 8.7699 1.8929 -1.2172 47 1 7.9100 2.9221 -2.3876 48 1 11.3862 4.1309 -2.5232 49 1 4.9617 -0.9504 -1.5956 50 1 3.4821 0.0441 -1.6791 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089718295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:09 Heat of formation + Delta-G solvation = 75.144035 kcal Electronic energy + Delta-G solvation = -32856.121290 eV Core-core repulsion = 28501.455038 eV Total energy + Delta-G solvation = -4354.666253 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.00608 -40.62109 -38.31526 -36.84785 -36.16071 -35.31623 -33.89440 -33.52254 -32.36628 -30.63354 -29.77248 -29.40691 -28.62787 -27.38634 -26.14472 -24.02278 -23.43978 -22.43024 -21.77615 -21.44344 -20.89456 -19.08829 -18.52052 -17.91581 -17.16473 -16.70614 -16.43175 -16.31996 -15.97401 -15.34780 -15.13987 -14.84546 -14.55136 -14.41550 -13.96787 -13.88742 -13.72070 -13.54129 -13.25045 -13.04282 -12.97988 -12.70772 -12.54215 -12.48877 -12.37621 -12.29165 -11.99758 -11.83068 -11.78443 -11.69615 -11.52834 -11.43635 -11.17974 -11.04646 -10.97239 -10.86285 -10.56729 -10.45623 -10.35776 -10.08381 -9.66111 -9.45109 -9.18551 -9.03031 -8.40208 -8.05868 -6.04085 -4.06589 0.71891 1.65447 2.39106 2.51346 2.77209 3.19232 3.33027 3.39585 3.45470 3.54271 3.91289 4.02587 4.16251 4.29420 4.41199 4.46955 4.56412 4.63321 4.72790 4.75893 4.79296 4.87017 4.96347 5.06507 5.08821 5.12498 5.22557 5.26188 5.34035 5.35127 5.36878 5.50083 5.55511 5.67172 5.71481 5.75489 5.80512 5.84297 6.05407 6.08769 6.18693 6.41699 6.48956 6.59506 7.05670 7.18302 7.30698 7.49248 7.60920 7.73395 7.91875 8.08981 8.30316 8.77482 8.98506 9.58384 11.06979 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002181 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.759254 B =12834.055491 C =13394.653683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.504 3.496 3 O -0.488 6.488 4 N -0.610 5.610 5 C 0.203 3.797 6 C 0.148 3.852 7 N -0.369 5.369 8 O 0.080 5.920 9 C 0.182 3.818 10 C -0.063 4.063 11 N -0.478 5.478 12 C 0.139 3.861 13 H 0.093 0.907 14 C -0.128 4.128 15 C 0.038 3.962 16 N -0.499 5.499 17 C 0.053 3.947 18 C 0.016 3.984 19 H 0.098 0.902 20 C 0.256 3.744 21 N -0.478 5.478 22 C 0.031 3.969 23 C -0.523 4.523 24 H 0.057 0.943 25 C 0.061 3.939 26 N -0.893 5.893 27 Si 0.891 3.109 28 H -0.279 1.279 29 H -0.286 1.286 30 H -0.273 1.273 31 C 0.042 3.958 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.036 0.964 47 H 0.025 0.975 48 H 0.262 0.738 49 H 0.043 0.957 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.490 -23.297 1.082 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.292 3.708 3 O -0.359 6.359 4 N -0.347 5.347 5 C 0.077 3.923 6 C -0.127 4.127 7 N -0.076 5.076 8 O 0.020 5.980 9 C -0.039 4.039 10 C -0.121 4.121 11 N -0.213 5.213 12 C 0.035 3.965 13 H 0.111 0.889 14 C -0.167 4.167 15 C -0.090 4.090 16 N -0.222 5.222 17 C -0.076 4.076 18 C -0.006 4.006 19 H 0.115 0.885 20 C -0.061 4.061 21 N -0.155 5.155 22 C -0.007 4.007 23 C -0.561 4.561 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.205 1.205 29 H -0.212 1.212 30 H -0.198 1.198 31 C -0.087 4.087 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.939 -21.020 1.326 31.885 hybrid contribution 1.300 -0.357 0.035 1.349 sum -22.639 -21.377 1.361 31.166 Atomic orbital electron populations 1.22057 0.92040 1.05646 1.04306 1.20907 0.90518 0.83200 0.76145 1.90941 1.69959 1.29929 1.45101 1.48133 1.06602 1.05231 1.74695 1.19750 1.00142 0.87594 0.84793 1.26448 0.88100 0.96896 1.01208 1.74648 1.21769 1.19942 0.91255 1.85317 1.32639 1.55770 1.24272 1.28854 0.86520 0.90805 0.97676 1.20425 0.97740 1.05796 0.88176 1.71825 1.25688 1.23277 1.00528 1.22014 0.78710 0.99724 0.96060 0.88868 1.22850 0.98893 0.99101 0.95809 1.23234 0.95532 0.98522 0.91711 1.64773 1.21173 1.34601 1.01694 1.22424 0.90439 0.96440 0.98276 1.19127 0.92733 0.86127 1.02623 0.88456 1.28773 0.91833 0.93327 0.92140 1.80954 1.12502 1.12047 1.10000 1.19172 0.87820 0.97818 0.95909 1.21155 1.05162 1.11461 1.18309 0.92493 1.24955 0.97126 0.97046 0.94909 1.69941 1.17029 1.40261 1.25977 0.86593 0.79371 0.83202 0.78943 1.20506 1.21175 1.19829 1.22987 0.98004 0.91582 0.96144 0.89178 0.89220 0.89059 0.87416 0.86795 0.88396 0.87745 0.87697 0.89690 0.91016 0.93423 0.89570 0.92864 0.90666 0.94585 0.95672 0.92870 0.93871 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.22 36.01 0.33 -1.19 16 2 C 0.50 6.09 6.61 -10.98 -0.07 6.02 16 3 O -0.49 -8.36 13.96 5.56 0.08 -8.29 16 4 N -0.61 -6.01 2.44 -165.94 -0.40 -6.41 16 5 C 0.20 1.39 5.63 -5.20 -0.03 1.36 16 6 C 0.15 1.33 7.68 -156.38 -1.20 0.12 16 7 N -0.37 -3.71 12.16 30.90 0.38 -3.34 16 8 O 0.08 0.71 11.31 18.11 0.20 0.91 16 9 C 0.18 1.26 8.51 -13.06 -0.11 1.15 16 10 C -0.06 -0.14 10.51 36.01 0.38 0.24 16 11 N -0.48 -4.14 10.62 -9.87 -0.10 -4.24 16 12 C 0.14 1.51 3.45 -66.58 -0.23 1.28 16 13 H 0.09 0.85 7.85 -51.93 -0.41 0.44 16 14 C -0.13 -1.44 6.30 -24.78 -0.16 -1.59 16 15 C 0.04 0.51 5.91 -1.81 -0.01 0.50 16 16 N -0.50 -8.01 4.53 -230.35 -1.04 -9.06 16 17 C 0.05 0.91 4.07 -3.82 -0.02 0.90 16 18 C 0.02 0.33 2.24 -93.41 -0.21 0.12 16 19 H 0.10 1.88 7.17 -51.93 -0.37 1.51 16 20 C 0.26 6.02 13.67 -20.76 -0.28 5.73 16 21 N -0.48 -12.15 18.54 42.15 0.78 -11.37 16 22 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 23 C -0.52 -14.54 8.60 -34.44 -0.30 -14.83 16 24 H 0.06 1.59 7.59 -52.48 -0.40 1.19 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 27 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 31 C 0.04 0.59 5.44 -2.75 -0.01 0.58 16 32 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.09 0.66 5.65 -51.93 -0.29 0.37 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.54 7.95 -51.93 -0.41 0.12 16 36 H 0.11 0.53 6.41 -51.93 -0.33 0.20 16 37 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.10 0.07 8.14 -51.92 -0.42 -0.35 16 39 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.58 7.81 -51.92 -0.41 0.17 16 43 H 0.09 1.23 7.67 -51.93 -0.40 0.83 16 44 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 45 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.04 0.58 7.77 -51.93 -0.40 0.17 16 50 H 0.08 1.26 6.94 -51.93 -0.36 0.90 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -37.49 414.05 -7.76 -45.26 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.46 Total: -3.77 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.14 Total: 2.68 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.34 Total: -60.00 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.28 Total: -7.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -37.49 -7.76 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089718295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.402 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds