Wall clock time and date at job start Tue Mar 31 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21275 * 120.00282 * 2 1 4 4 N 1.34783 * 119.99484 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00193 * 5.03674 * 4 2 1 6 6 C 1.50699 * 109.47317 * 89.99992 * 5 4 2 7 7 N 1.29948 * 126.28647 * 90.02381 * 6 5 4 8 8 O 1.21301 * 110.25093 * 179.97438 * 7 6 5 9 9 C 1.33641 * 109.81151 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.55092 * 180.02562 * 9 8 7 11 11 N 1.31133 * 106.89604 * 359.77707 * 9 8 7 12 12 C 1.46496 * 119.99679 * 185.03739 * 4 2 1 13 13 H 1.08993 * 110.27728 * 180.64793 * 12 4 2 14 14 C 1.54599 * 110.31254 * 58.55397 * 12 4 2 15 15 C 1.55092 * 102.84917 * 219.18790 * 14 12 4 16 16 N 1.48534 * 103.28593 * 37.30567 * 15 14 12 17 17 C 1.46901 * 110.99985 * 200.33119 * 16 15 14 18 18 C 1.52998 * 109.47072 * 287.39800 * 17 16 15 19 19 H 1.08998 * 109.47184 * 55.00024 * 18 17 16 20 20 C 1.47201 * 109.47355 * 294.99675 * 18 17 16 21 21 N 5.76629 * 128.45605 * 346.34379 * 2 1 3 22 22 C 1.53004 * 109.46892 * 175.00253 * 18 17 16 23 23 C 1.50699 * 109.47206 * 185.00164 * 22 18 17 24 24 H 1.08006 * 120.00107 * 359.97438 * 23 22 18 25 25 C 1.37873 * 120.00123 * 179.97438 * 23 22 18 26 26 N 1.31514 * 120.00280 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00148 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46985 * 89.99871 * 27 25 23 29 29 H 1.48497 * 109.47358 * 210.00225 * 27 25 23 30 30 H 1.48498 * 109.47018 * 330.00388 * 27 25 23 31 31 C 1.47903 * 105.81770 * 320.84877 * 16 15 14 32 32 H 1.09007 * 109.47302 * 264.78747 * 1 2 3 33 33 H 1.09003 * 109.47630 * 144.78616 * 1 2 3 34 34 H 1.09005 * 109.47339 * 24.78288 * 1 2 3 35 35 H 1.09005 * 109.47016 * 209.99832 * 5 4 2 36 36 H 1.09004 * 109.47514 * 329.99670 * 5 4 2 37 37 H 1.09000 * 109.47631 * 359.97438 * 10 9 8 38 38 H 1.09007 * 109.47021 * 119.98613 * 10 9 8 39 39 H 1.08998 * 109.47393 * 239.98074 * 10 9 8 40 40 H 1.09000 * 110.72190 * 337.49311 * 14 12 4 41 41 H 1.09001 * 110.71715 * 100.76657 * 14 12 4 42 42 H 1.09008 * 110.59383 * 278.87112 * 15 14 12 43 43 H 1.09003 * 110.82778 * 155.85244 * 15 14 12 44 44 H 1.09004 * 109.46942 * 47.39897 * 17 16 15 45 45 H 1.08995 * 109.46812 * 167.39552 * 17 16 15 46 46 H 1.09005 * 109.46969 * 304.99799 * 22 18 17 47 47 H 1.09000 * 109.47466 * 65.00017 * 22 18 17 48 48 H 0.96995 * 120.00539 * 180.02562 * 26 25 23 49 49 H 1.09000 * 109.91256 * 265.97487 * 31 16 15 50 50 H 1.08998 * 110.07920 * 144.77815 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4525 -2.4334 -0.1125 6 6 1.3108 -2.8046 -1.5661 7 7 2.1436 -3.5192 -2.2621 8 8 1.7442 -3.6388 -3.4012 9 6 0.5831 -2.9927 -3.5442 10 6 -0.2417 -2.8970 -4.8019 11 7 0.2960 -2.4625 -2.3798 12 6 3.6415 -1.1699 0.1109 13 1 4.0207 -2.1913 0.0828 14 6 4.0813 -0.4700 1.4173 15 6 5.3387 0.3240 0.9769 16 7 4.9882 0.7874 -0.3901 17 6 6.1942 1.1352 -1.1534 18 6 6.7755 2.4458 -0.6192 19 1 6.9507 2.3553 0.4528 20 6 5.8260 3.5422 -0.8705 21 7 5.0931 4.3878 -1.0661 22 6 8.0979 2.7438 -1.3288 23 6 8.7311 3.9673 -0.7180 24 1 8.2393 4.4813 0.0947 25 6 9.9382 4.4307 -1.1967 26 7 10.5368 3.8052 -2.1867 27 14 10.7227 5.9478 -0.4401 28 1 11.6065 5.5407 0.6817 29 1 11.5244 6.6563 -1.4699 30 1 9.6609 6.8523 0.0694 31 6 4.2655 -0.3367 -1.0239 32 1 -0.3634 -0.0934 1.0235 33 1 -0.3634 -0.8396 -0.5926 34 1 -0.3634 0.9330 -0.4308 35 1 2.0021 -3.2162 0.4105 36 1 0.4635 -2.3244 0.3328 37 1 0.2540 -3.4436 -5.6041 38 1 -1.2272 -3.3274 -4.6237 39 1 -0.3486 -1.8505 -5.0875 40 1 3.3038 0.2058 1.7735 41 1 4.3351 -1.2045 2.1817 42 1 6.2130 -0.3265 0.9503 43 1 5.5123 1.1729 1.6382 44 1 6.9327 0.3405 -1.0480 45 1 5.9363 1.2543 -2.2057 46 1 8.7699 1.8929 -1.2172 47 1 7.9100 2.9221 -2.3876 48 1 11.3862 4.1309 -2.5232 49 1 4.9617 -0.9504 -1.5956 50 1 3.4821 0.0441 -1.6791 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089718295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:08 Heat of formation + Delta-G solvation = 48.363027 kcal Electronic energy + Delta-G solvation = -32857.282602 eV Core-core repulsion = 28501.455038 eV Total energy + Delta-G solvation = -4355.827564 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.60494 -41.54361 -39.53435 -37.87911 -37.47671 -36.19076 -35.59252 -34.47955 -33.92529 -31.95636 -30.66666 -29.90693 -29.41364 -28.58852 -27.56036 -24.98571 -24.62428 -23.59750 -23.15267 -22.32558 -22.08143 -19.91100 -19.17279 -18.62548 -18.54539 -18.23091 -17.72052 -17.54596 -16.77208 -16.73173 -16.32888 -15.92278 -15.68580 -15.32846 -15.08524 -14.80795 -14.68270 -14.45702 -14.22780 -14.17810 -13.91950 -13.87317 -13.78287 -13.61374 -13.36478 -13.21343 -13.12067 -13.06586 -12.95979 -12.88924 -12.78750 -12.68410 -12.53745 -12.45646 -12.36529 -12.18229 -12.08155 -11.87024 -11.81243 -11.39906 -11.17780 -10.93831 -10.62732 -10.57572 -9.93241 -9.23823 -8.21961 -6.30599 0.14941 1.04180 1.37827 1.39714 1.49771 1.63491 1.94101 2.01667 2.04568 2.11584 2.39442 2.67378 2.98971 3.01745 3.12865 3.31483 3.52645 3.66069 3.78254 3.92635 4.00161 4.16534 4.19429 4.27129 4.33934 4.36638 4.39695 4.47545 4.58475 4.59619 4.63003 4.64079 4.66680 4.68184 4.70977 4.78437 4.89171 4.93329 4.97141 4.99868 5.06425 5.14989 5.17854 5.41598 5.55259 5.57196 5.75353 5.99724 6.06491 6.19995 6.30475 6.79344 6.89872 7.14673 7.21941 7.37760 8.89199 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002181 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.759254 B =12834.055491 C =13394.653683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.500 3.500 3 O -0.549 6.549 4 N -0.603 5.603 5 C 0.200 3.800 6 C 0.144 3.856 7 N -0.394 5.394 8 O 0.067 5.933 9 C 0.187 3.813 10 C -0.063 4.063 11 N -0.501 5.501 12 C 0.143 3.857 13 H 0.122 0.878 14 C -0.117 4.117 15 C 0.033 3.967 16 N -0.524 5.524 17 C 0.065 3.935 18 C 0.027 3.973 19 H 0.114 0.886 20 C 0.265 3.735 21 N -0.517 5.517 22 C 0.041 3.959 23 C -0.539 4.539 24 H 0.051 0.949 25 C 0.011 3.989 26 N -0.923 5.923 27 Si 0.951 3.049 28 H -0.263 1.263 29 H -0.282 1.282 30 H -0.278 1.278 31 C 0.047 3.953 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.038 0.962 47 H -0.002 1.002 48 H 0.265 0.735 49 H 0.049 0.951 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.265 -25.457 2.264 35.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.290 3.710 3 O -0.425 6.425 4 N -0.338 5.338 5 C 0.075 3.925 6 C -0.131 4.131 7 N -0.104 5.104 8 O 0.009 5.991 9 C -0.033 4.033 10 C -0.121 4.121 11 N -0.236 5.236 12 C 0.039 3.961 13 H 0.139 0.861 14 C -0.155 4.155 15 C -0.094 4.094 16 N -0.248 5.248 17 C -0.064 4.064 18 C 0.005 3.995 19 H 0.132 0.868 20 C -0.051 4.051 21 N -0.195 5.195 22 C 0.002 3.998 23 C -0.578 4.578 24 H 0.070 0.930 25 C -0.187 4.187 26 N -0.563 5.563 27 Si 0.777 3.223 28 H -0.188 1.188 29 H -0.208 1.208 30 H -0.204 1.204 31 C -0.082 4.082 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.016 0.984 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -24.742 -23.234 2.498 34.033 hybrid contribution 1.476 0.289 -0.410 1.559 sum -23.266 -22.945 2.088 32.743 Atomic orbital electron populations 1.22020 0.89368 1.05494 1.06138 1.21533 0.91855 0.82878 0.74754 1.90917 1.71305 1.32140 1.48137 1.48106 1.06334 1.05907 1.73432 1.20144 1.01580 0.86607 0.84143 1.26800 0.87947 0.96452 1.01911 1.74621 1.22730 1.21181 0.91836 1.85280 1.33412 1.56365 1.24029 1.29750 0.85840 0.89138 0.98559 1.20727 0.98109 1.06529 0.86722 1.71842 1.26184 1.24256 1.01269 1.22022 0.79346 1.00341 0.94400 0.86052 1.22782 0.97051 0.99087 0.96609 1.23324 0.97481 0.98747 0.89896 1.64635 1.20671 1.36536 1.02962 1.22224 0.91639 0.95090 0.97481 1.19121 0.90365 0.86807 1.03186 0.86792 1.29405 0.91498 0.93141 0.91042 1.80938 1.13850 1.13338 1.11326 1.18981 0.89582 0.96818 0.94424 1.21507 1.05468 1.12516 1.18263 0.93046 1.25731 0.97801 0.99826 0.95391 1.70032 1.17517 1.41707 1.27042 0.85653 0.78445 0.79644 0.78589 1.18806 1.20752 1.20360 1.22891 0.97128 0.91233 0.96922 0.86463 0.87920 0.90309 0.84866 0.84314 0.86498 0.85741 0.87250 0.91972 0.87535 0.91385 0.90911 0.90607 0.92028 0.94424 0.98380 0.92609 0.93246 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.22 71.24 0.66 -2.01 16 2 C 0.50 11.88 6.61 87.66 0.58 12.46 16 3 O -0.55 -19.44 13.96 -3.01 -0.04 -19.48 16 4 N -0.60 -10.93 2.44 -797.29 -1.94 -12.87 16 5 C 0.20 2.22 5.63 85.63 0.48 2.70 16 6 C 0.14 2.35 7.68 138.46 1.06 3.41 16 7 N -0.39 -7.49 12.16 -60.32 -0.73 -8.22 16 8 O 0.07 1.13 11.31 74.85 0.85 1.97 16 9 C 0.19 2.38 8.51 88.38 0.75 3.13 16 10 C -0.06 -0.16 10.51 71.24 0.75 0.58 16 11 N -0.50 -8.01 10.62 -303.19 -3.22 -11.23 16 12 C 0.14 2.85 3.45 45.87 0.16 3.01 16 13 H 0.12 1.78 7.85 -2.39 -0.02 1.76 16 14 C -0.12 -2.39 6.30 31.86 0.20 -2.19 16 15 C 0.03 0.84 5.91 86.70 0.51 1.36 16 16 N -0.52 -16.80 4.53 -882.68 -4.00 -20.80 16 17 C 0.07 2.22 4.07 86.30 0.35 2.57 16 18 C 0.03 1.11 2.24 -12.60 -0.03 1.09 16 19 H 0.11 4.35 7.17 -2.39 -0.02 4.33 16 20 C 0.27 12.76 13.67 89.44 1.22 13.98 16 21 N -0.52 -27.04 18.54 20.01 0.37 -26.67 16 22 C 0.04 2.02 4.42 29.85 0.13 2.16 16 23 C -0.54 -30.21 8.60 25.60 0.22 -29.99 16 24 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 25 C 0.01 0.65 5.46 84.65 0.46 1.11 16 26 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 27 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 28 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 29 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 30 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 31 C 0.05 1.32 5.44 86.45 0.47 1.79 16 32 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.33 5.65 -2.39 -0.01 1.31 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.13 0.83 7.95 -2.38 -0.02 0.81 16 36 H 0.14 0.84 6.41 -2.38 -0.02 0.83 16 37 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.12 -0.13 8.14 -2.38 -0.02 -0.15 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.06 1.60 6.44 -2.39 -0.02 1.59 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.46 7.81 -2.38 -0.02 1.44 16 43 H 0.07 2.03 7.67 -2.39 -0.02 2.01 16 44 H 0.08 2.24 7.83 -2.38 -0.02 2.22 16 45 H 0.06 2.24 8.08 -2.39 -0.02 2.23 16 46 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.05 1.28 7.77 -2.39 -0.02 1.27 16 50 H 0.04 1.44 6.94 -2.39 -0.02 1.43 16 Total: -1.00 -84.22 414.05 2.54 -81.69 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.96 Total: 7.74 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 7.99 Total: 15.15 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -9.24 Total: -134.15 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.80 Total: -17.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -84.22 2.54 -81.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089718295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.050 kcal (2) G-P(sol) polarization free energy of solvation -84.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds