Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 120.00203 * 2 1 4 4 N 1.34783 * 120.00077 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99834 * 355.17679 * 4 2 1 6 6 C 1.50697 * 109.46831 * 275.55535 * 5 4 2 7 7 N 1.29945 * 126.28907 * 269.68815 * 6 5 4 8 8 O 1.21300 * 110.25140 * 179.84379 * 7 6 5 9 9 C 1.33642 * 109.81272 * 0.42739 * 8 7 6 10 10 C 1.50693 * 126.55249 * 179.75740 * 9 8 7 11 11 N 1.31127 * 106.89291 * 359.73525 * 9 8 7 12 12 C 1.46502 * 119.99772 * 175.17106 * 4 2 1 13 13 H 1.09006 * 110.27072 * 182.09269 * 12 4 2 14 14 C 1.54592 * 110.39404 * 304.23560 * 12 4 2 15 15 C 1.54938 * 102.91997 * 140.91854 * 14 12 4 16 16 N 1.48524 * 103.22966 * 322.58732 * 15 14 12 17 17 C 1.46900 * 111.00610 * 159.72128 * 16 15 14 18 18 C 1.53001 * 109.46706 * 52.60212 * 17 16 15 19 19 H 1.08996 * 109.46966 * 55.00460 * 18 17 16 20 20 C 1.47204 * 109.47178 * 295.00021 * 18 17 16 21 21 N 6.71500 * 162.93084 * 300.94033 * 2 1 3 22 22 C 1.53002 * 109.46765 * 175.00600 * 18 17 16 23 23 C 1.50699 * 109.46907 * 185.00000 * 22 18 17 24 24 H 1.08004 * 120.00297 * 359.72143 * 23 22 18 25 25 C 1.37878 * 119.99756 * 179.97438 * 23 22 18 26 26 N 1.31519 * 119.99778 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00361 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47158 * 89.99818 * 27 25 23 29 29 H 1.48499 * 109.47704 * 210.00162 * 27 25 23 30 30 H 1.48499 * 109.47158 * 329.99975 * 27 25 23 31 31 C 1.47903 * 105.82126 * 39.20445 * 16 15 14 32 32 H 1.09002 * 109.47023 * 185.34820 * 1 2 3 33 33 H 1.08995 * 109.47347 * 305.34154 * 1 2 3 34 34 H 1.08998 * 109.47217 * 65.34581 * 1 2 3 35 35 H 1.08998 * 109.47061 * 35.55948 * 5 4 2 36 36 H 1.08998 * 109.46704 * 155.55942 * 5 4 2 37 37 H 1.08997 * 109.47398 * 269.97304 * 10 9 8 38 38 H 1.09000 * 109.47456 * 29.97548 * 10 9 8 39 39 H 1.08998 * 109.47095 * 149.97533 * 10 9 8 40 40 H 1.08997 * 110.72516 * 259.27657 * 14 12 4 41 41 H 1.08999 * 110.72793 * 22.38283 * 14 12 4 42 42 H 1.08999 * 110.66504 * 204.14800 * 15 14 12 43 43 H 1.09003 * 110.66689 * 81.02346 * 15 14 12 44 44 H 1.09003 * 109.46580 * 292.60833 * 17 16 15 45 45 H 1.08995 * 109.47285 * 172.60674 * 17 16 15 46 46 H 1.08993 * 109.47278 * 64.99914 * 22 18 17 47 47 H 1.09002 * 109.47216 * 304.99654 * 22 18 17 48 48 H 0.97000 * 119.99983 * 179.97438 * 26 25 23 49 49 H 1.09004 * 109.91690 * 94.02161 * 31 16 15 50 50 H 1.09001 * 109.92285 * 215.32018 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4522 -2.4337 0.1078 6 6 1.1865 -2.7389 1.5594 7 7 1.9568 -3.4173 2.3562 8 8 1.4629 -3.4836 3.4621 9 6 0.2907 -2.8418 3.4738 10 6 -0.6404 -2.6949 4.6495 11 7 0.1057 -2.3641 2.2667 12 6 3.6420 -1.1695 -0.1063 13 1 4.0175 -2.1926 -0.1276 14 6 4.0906 -0.4068 -1.3739 15 6 5.3498 0.3564 -0.8916 16 7 4.9958 0.7543 0.4949 17 6 6.2001 1.0586 1.2792 18 6 7.0558 2.0781 0.5247 19 1 6.4542 2.9571 0.2935 20 6 7.5471 1.4767 -0.7258 21 7 7.9262 1.0134 -1.6906 22 6 8.2454 2.4887 1.3948 23 6 9.0194 3.5818 0.7040 24 1 8.6978 3.9439 -0.2613 25 6 10.1411 4.1159 1.3020 26 7 10.8163 5.0701 0.6994 27 14 10.7010 3.4852 2.9687 28 1 11.6449 2.3546 2.7786 29 1 11.3808 4.5784 3.7090 30 1 9.5224 3.0210 3.7438 31 6 4.2651 -0.3957 1.0703 32 1 -0.3633 -1.0232 0.0958 33 1 -0.3634 0.5944 0.8382 34 1 -0.3633 0.4287 -0.9340 35 1 0.5053 -2.3544 -0.4262 36 1 2.0494 -3.2344 -0.3284 37 1 -1.3433 -3.5278 4.6627 38 1 -0.0617 -2.6933 5.5733 39 1 -1.1895 -1.7574 4.5632 40 1 4.3442 -1.1029 -2.1734 41 1 3.3167 0.2879 -1.7003 42 1 5.5274 1.2357 -1.5107 43 1 6.2209 -0.2988 -0.8932 44 1 6.7743 0.1448 1.4324 45 1 5.9098 1.4716 2.2452 46 1 8.8947 1.6276 1.5524 47 1 7.8838 2.8519 2.3568 48 1 11.6052 5.4462 1.1202 49 1 4.9559 -1.0401 1.6142 50 1 3.4804 -0.0406 1.7383 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089718297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = 93.673589 kcal Electronic energy + Delta-G solvation = -32998.504280 eV Core-core repulsion = 28644.641529 eV Total energy + Delta-G solvation = -4353.862751 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.04560 -40.71558 -38.71816 -36.90477 -36.30785 -35.31513 -34.10344 -33.67071 -32.40087 -30.87095 -29.81152 -29.43144 -28.67110 -27.65139 -26.34395 -24.07333 -23.61347 -22.55042 -21.82409 -21.18542 -20.75604 -19.10774 -18.56379 -17.96415 -17.26111 -16.91327 -16.73827 -16.69157 -15.95575 -15.62559 -15.20519 -14.69645 -14.57333 -14.27518 -14.08218 -14.00694 -13.73187 -13.58670 -13.48128 -13.28612 -13.20222 -12.65685 -12.57399 -12.55946 -12.47909 -12.35724 -12.30843 -12.04358 -11.94476 -11.77285 -11.68571 -11.48418 -11.45479 -11.03960 -10.98365 -10.76310 -10.71494 -10.39408 -10.25151 -9.94795 -9.72562 -9.69055 -9.29149 -9.08312 -8.58077 -8.15528 -6.07061 -4.07295 0.68348 1.61902 2.35546 2.45233 2.72607 3.16431 3.29361 3.36880 3.37847 3.50364 3.55980 3.60975 4.09151 4.26372 4.38132 4.41513 4.52831 4.59214 4.68620 4.69885 4.72626 4.76682 4.80999 4.93787 5.04564 5.10075 5.22400 5.26063 5.27652 5.32078 5.33461 5.47553 5.49979 5.52924 5.64812 5.69170 5.71233 5.80619 6.01687 6.06199 6.17642 6.24458 6.37506 6.42312 6.96262 7.00600 7.09758 7.13156 7.23884 7.67488 7.70106 8.02998 8.37300 8.46481 8.96722 9.52805 11.06104 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.002321 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.932281 B =12062.676550 C =13100.620870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.506 3.494 3 O -0.493 6.493 4 N -0.609 5.609 5 C 0.201 3.799 6 C 0.148 3.852 7 N -0.368 5.368 8 O 0.080 5.920 9 C 0.180 3.820 10 C -0.063 4.063 11 N -0.476 5.476 12 C 0.139 3.861 13 H 0.093 0.907 14 C -0.128 4.128 15 C 0.033 3.967 16 N -0.495 5.495 17 C 0.052 3.948 18 C 0.015 3.985 19 H 0.117 0.883 20 C 0.247 3.753 21 N -0.474 5.474 22 C -0.003 4.003 23 C -0.526 4.526 24 H 0.074 0.926 25 C 0.071 3.929 26 N -0.897 5.897 27 Si 0.878 3.122 28 H -0.278 1.278 29 H -0.286 1.286 30 H -0.262 1.262 31 C 0.040 3.960 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.093 0.907 46 H 0.018 0.982 47 H 0.039 0.961 48 H 0.264 0.736 49 H 0.044 0.956 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.158 -20.691 6.276 36.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.365 6.365 4 N -0.345 5.345 5 C 0.075 3.925 6 C -0.127 4.127 7 N -0.075 5.075 8 O 0.020 5.980 9 C -0.040 4.040 10 C -0.122 4.122 11 N -0.211 5.211 12 C 0.035 3.965 13 H 0.111 0.889 14 C -0.167 4.167 15 C -0.095 4.095 16 N -0.219 5.219 17 C -0.078 4.078 18 C -0.007 4.007 19 H 0.134 0.866 20 C -0.069 4.069 21 N -0.151 5.151 22 C -0.042 4.042 23 C -0.564 4.564 24 H 0.092 0.908 25 C -0.132 4.132 26 N -0.536 5.536 27 Si 0.705 3.295 28 H -0.203 1.203 29 H -0.212 1.212 30 H -0.187 1.187 31 C -0.089 4.089 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.036 0.964 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.861 -20.300 4.251 34.733 hybrid contribution 0.851 -0.884 1.523 1.956 sum -27.011 -21.183 5.774 34.809 Atomic orbital electron populations 1.22001 0.91811 1.04750 1.04908 1.20913 0.90542 0.83167 0.75913 1.90894 1.69970 1.30010 1.45649 1.48161 1.06533 1.05293 1.74505 1.19786 0.99841 0.87863 0.84969 1.26419 0.88154 0.96965 1.01158 1.74664 1.20901 1.20290 0.91662 1.85314 1.29647 1.56432 1.26636 1.28856 0.87478 0.91230 0.96435 1.20422 0.95642 1.05611 0.90478 1.71863 1.23791 1.23133 1.02284 1.22031 0.78624 0.99821 0.96037 0.88917 1.22842 0.98776 0.99138 0.95931 1.23540 0.95678 0.99268 0.91062 1.64881 1.20493 1.35036 1.01487 1.22482 0.89582 0.97927 0.97770 1.19091 0.97884 0.97133 0.86601 0.86573 1.28914 0.91341 0.92376 0.94313 1.81036 1.11130 1.10829 1.12086 1.19628 0.91869 0.97293 0.95452 1.21033 1.10377 1.18549 1.06422 0.90775 1.24992 0.96084 0.94555 0.97523 1.69911 1.18372 1.26511 1.38761 0.86812 0.79361 0.78700 0.84647 1.20342 1.21235 1.18694 1.23058 0.98068 0.91466 0.96294 0.90001 0.88887 0.89002 0.86686 0.87313 0.87956 0.88311 0.87582 0.91173 0.89321 0.89371 0.93335 0.94416 0.88857 0.96357 0.94282 0.92602 0.93779 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 10.00 36.00 0.36 -0.97 16 2 C 0.51 5.69 6.60 -10.99 -0.07 5.62 16 3 O -0.49 -7.73 13.98 5.56 0.08 -7.66 16 4 N -0.61 -5.84 2.44 -165.93 -0.41 -6.25 16 5 C 0.20 1.35 5.67 -5.19 -0.03 1.32 16 6 C 0.15 1.26 7.66 -156.38 -1.20 0.06 16 7 N -0.37 -3.59 12.16 30.90 0.38 -3.22 16 8 O 0.08 0.67 11.31 18.10 0.20 0.87 16 9 C 0.18 1.12 8.51 -13.06 -0.11 1.01 16 10 C -0.06 -0.09 10.51 36.00 0.38 0.29 16 11 N -0.48 -3.75 10.99 -9.87 -0.11 -3.86 16 12 C 0.14 1.56 3.46 -66.58 -0.23 1.33 16 13 H 0.09 0.89 7.76 -51.93 -0.40 0.49 16 14 C -0.13 -1.63 6.26 -24.87 -0.16 -1.79 16 15 C 0.03 0.51 4.35 -1.90 -0.01 0.51 16 16 N -0.50 -7.80 5.03 -230.46 -1.16 -8.96 16 17 C 0.05 0.83 4.71 -3.82 -0.02 0.81 16 18 C 0.01 0.29 2.29 -93.40 -0.21 0.07 16 19 H 0.12 2.27 8.14 -51.93 -0.42 1.85 16 20 C 0.25 5.20 9.67 -20.78 -0.20 5.00 16 21 N -0.47 -10.55 17.37 42.13 0.73 -9.82 16 22 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 23 C -0.53 -14.69 9.15 -34.44 -0.32 -15.00 16 24 H 0.07 2.27 7.83 -52.48 -0.41 1.86 16 25 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 26 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 27 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 31 C 0.04 0.55 5.52 -2.75 -0.02 0.53 16 32 H 0.08 0.49 4.85 -51.93 -0.25 0.24 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.12 0.51 6.14 -51.93 -0.32 0.19 16 36 H 0.11 0.56 7.81 -51.93 -0.41 0.15 16 37 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.26 6.21 -51.93 -0.32 0.93 16 42 H 0.09 1.57 6.52 -51.93 -0.34 1.23 16 43 H 0.05 0.81 6.33 -51.93 -0.33 0.48 16 44 H 0.04 0.59 7.81 -51.93 -0.41 0.18 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 47 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.04 0.58 7.57 -51.93 -0.39 0.18 16 50 H 0.08 1.16 7.13 -51.93 -0.37 0.79 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -36.58 402.96 -7.40 -43.98 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.26 Total: -1.35 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.02 Total: 0.54 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.21 Total: -59.05 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.28 Total: -6.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.58 -7.40 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089718297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.652 kcal (2) G-P(sol) polarization free energy of solvation -36.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds