Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 120.00203 * 2 1 4 4 N 1.34783 * 120.00077 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99834 * 355.17679 * 4 2 1 6 6 C 1.50697 * 109.46831 * 275.55535 * 5 4 2 7 7 N 1.29945 * 126.28907 * 269.68815 * 6 5 4 8 8 O 1.21300 * 110.25140 * 179.84379 * 7 6 5 9 9 C 1.33642 * 109.81272 * 0.42739 * 8 7 6 10 10 C 1.50693 * 126.55249 * 179.75740 * 9 8 7 11 11 N 1.31127 * 106.89291 * 359.73525 * 9 8 7 12 12 C 1.46502 * 119.99772 * 175.17106 * 4 2 1 13 13 H 1.09006 * 110.27072 * 182.09269 * 12 4 2 14 14 C 1.54592 * 110.39404 * 304.23560 * 12 4 2 15 15 C 1.54938 * 102.91997 * 140.91854 * 14 12 4 16 16 N 1.48524 * 103.22966 * 322.58732 * 15 14 12 17 17 C 1.46900 * 111.00610 * 159.72128 * 16 15 14 18 18 C 1.53001 * 109.46706 * 52.60212 * 17 16 15 19 19 H 1.08996 * 109.46966 * 55.00460 * 18 17 16 20 20 C 1.47204 * 109.47178 * 295.00021 * 18 17 16 21 21 N 6.71500 * 162.93084 * 300.94033 * 2 1 3 22 22 C 1.53002 * 109.46765 * 175.00600 * 18 17 16 23 23 C 1.50699 * 109.46907 * 185.00000 * 22 18 17 24 24 H 1.08004 * 120.00297 * 359.72143 * 23 22 18 25 25 C 1.37878 * 119.99756 * 179.97438 * 23 22 18 26 26 N 1.31519 * 119.99778 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00361 * 359.97438 * 25 23 22 28 28 H 1.48505 * 109.47158 * 89.99818 * 27 25 23 29 29 H 1.48499 * 109.47704 * 210.00162 * 27 25 23 30 30 H 1.48499 * 109.47158 * 329.99975 * 27 25 23 31 31 C 1.47903 * 105.82126 * 39.20445 * 16 15 14 32 32 H 1.09002 * 109.47023 * 185.34820 * 1 2 3 33 33 H 1.08995 * 109.47347 * 305.34154 * 1 2 3 34 34 H 1.08998 * 109.47217 * 65.34581 * 1 2 3 35 35 H 1.08998 * 109.47061 * 35.55948 * 5 4 2 36 36 H 1.08998 * 109.46704 * 155.55942 * 5 4 2 37 37 H 1.08997 * 109.47398 * 269.97304 * 10 9 8 38 38 H 1.09000 * 109.47456 * 29.97548 * 10 9 8 39 39 H 1.08998 * 109.47095 * 149.97533 * 10 9 8 40 40 H 1.08997 * 110.72516 * 259.27657 * 14 12 4 41 41 H 1.08999 * 110.72793 * 22.38283 * 14 12 4 42 42 H 1.08999 * 110.66504 * 204.14800 * 15 14 12 43 43 H 1.09003 * 110.66689 * 81.02346 * 15 14 12 44 44 H 1.09003 * 109.46580 * 292.60833 * 17 16 15 45 45 H 1.08995 * 109.47285 * 172.60674 * 17 16 15 46 46 H 1.08993 * 109.47278 * 64.99914 * 22 18 17 47 47 H 1.09002 * 109.47216 * 304.99654 * 22 18 17 48 48 H 0.97000 * 119.99983 * 179.97438 * 26 25 23 49 49 H 1.09004 * 109.91690 * 94.02161 * 31 16 15 50 50 H 1.09001 * 109.92285 * 215.32018 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4522 -2.4337 0.1078 6 6 1.1865 -2.7389 1.5594 7 7 1.9568 -3.4173 2.3562 8 8 1.4629 -3.4836 3.4621 9 6 0.2907 -2.8418 3.4738 10 6 -0.6404 -2.6949 4.6495 11 7 0.1057 -2.3641 2.2667 12 6 3.6420 -1.1695 -0.1063 13 1 4.0175 -2.1926 -0.1276 14 6 4.0906 -0.4068 -1.3739 15 6 5.3498 0.3564 -0.8916 16 7 4.9958 0.7543 0.4949 17 6 6.2001 1.0586 1.2792 18 6 7.0558 2.0781 0.5247 19 1 6.4542 2.9571 0.2935 20 6 7.5471 1.4767 -0.7258 21 7 7.9262 1.0134 -1.6906 22 6 8.2454 2.4887 1.3948 23 6 9.0194 3.5818 0.7040 24 1 8.6978 3.9439 -0.2613 25 6 10.1411 4.1159 1.3020 26 7 10.8163 5.0701 0.6994 27 14 10.7010 3.4852 2.9687 28 1 11.6449 2.3546 2.7786 29 1 11.3808 4.5784 3.7090 30 1 9.5224 3.0210 3.7438 31 6 4.2651 -0.3957 1.0703 32 1 -0.3633 -1.0232 0.0958 33 1 -0.3634 0.5944 0.8382 34 1 -0.3633 0.4287 -0.9340 35 1 0.5053 -2.3544 -0.4262 36 1 2.0494 -3.2344 -0.3284 37 1 -1.3433 -3.5278 4.6627 38 1 -0.0617 -2.6933 5.5733 39 1 -1.1895 -1.7574 4.5632 40 1 4.3442 -1.1029 -2.1734 41 1 3.3167 0.2879 -1.7003 42 1 5.5274 1.2357 -1.5107 43 1 6.2209 -0.2988 -0.8932 44 1 6.7743 0.1448 1.4324 45 1 5.9098 1.4716 2.2452 46 1 8.8947 1.6276 1.5524 47 1 7.8838 2.8519 2.3568 48 1 11.6052 5.4462 1.1202 49 1 4.9559 -1.0401 1.6142 50 1 3.4804 -0.0406 1.7383 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089718297.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = 66.046108 kcal Electronic energy + Delta-G solvation = -32999.702298 eV Core-core repulsion = 28644.641529 eV Total energy + Delta-G solvation = -4355.060768 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.58793 -41.64903 -39.95463 -37.84176 -37.42906 -36.15398 -35.74094 -34.49501 -34.01911 -32.18923 -30.69614 -29.91390 -29.50851 -28.82542 -27.60234 -25.02781 -24.61840 -23.61422 -23.06891 -22.22692 -22.03954 -19.89309 -19.16021 -18.95001 -18.66635 -18.45351 -17.82146 -17.65026 -16.91531 -16.68032 -16.12781 -15.85901 -15.65886 -15.51671 -15.18348 -15.02229 -14.78599 -14.47857 -14.46530 -14.12051 -14.09139 -13.91749 -13.85033 -13.72232 -13.45367 -13.32824 -13.22727 -13.08929 -13.00033 -12.87646 -12.70755 -12.58956 -12.48994 -12.34733 -12.25091 -12.07236 -11.97872 -11.83573 -11.74680 -11.55497 -11.33884 -10.91226 -10.77161 -10.60881 -9.94906 -9.36715 -8.28104 -6.34235 0.17993 1.06353 1.39720 1.41404 1.52935 1.63046 1.86276 1.88602 1.97174 2.02525 2.37801 2.68544 2.90594 3.02639 3.06160 3.14732 3.48656 3.53749 3.72957 3.93807 3.95294 4.04290 4.14394 4.16757 4.26982 4.28543 4.34979 4.43292 4.52608 4.58623 4.61227 4.62865 4.67904 4.68724 4.71569 4.75741 4.79621 4.80084 4.86845 5.00762 5.04604 5.11189 5.17180 5.18859 5.36926 5.49111 5.58265 5.83580 5.99324 6.22419 6.29766 6.67030 6.74328 7.17873 7.21262 7.29818 8.88947 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.002321 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.932281 B =12062.676550 C =13100.620870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.502 3.498 3 O -0.546 6.546 4 N -0.603 5.603 5 C 0.198 3.802 6 C 0.144 3.856 7 N -0.396 5.396 8 O 0.067 5.933 9 C 0.187 3.813 10 C -0.063 4.063 11 N -0.495 5.495 12 C 0.144 3.856 13 H 0.117 0.883 14 C -0.119 4.119 15 C 0.035 3.965 16 N -0.509 5.509 17 C 0.061 3.939 18 C 0.022 3.978 19 H 0.109 0.891 20 C 0.253 3.747 21 N -0.500 5.500 22 C 0.001 3.999 23 C -0.532 4.532 24 H 0.026 0.974 25 C 0.003 3.997 26 N -0.953 5.953 27 Si 0.950 3.050 28 H -0.274 1.274 29 H -0.286 1.286 30 H -0.227 1.227 31 C 0.045 3.955 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.049 0.951 45 H 0.110 0.890 46 H 0.027 0.973 47 H 0.062 0.938 48 H 0.266 0.734 49 H 0.053 0.947 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.361 -23.479 8.643 40.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.422 6.422 4 N -0.337 5.337 5 C 0.073 3.927 6 C -0.131 4.131 7 N -0.106 5.106 8 O 0.009 5.991 9 C -0.033 4.033 10 C -0.121 4.121 11 N -0.230 5.230 12 C 0.040 3.960 13 H 0.135 0.865 14 C -0.158 4.158 15 C -0.093 4.093 16 N -0.233 5.233 17 C -0.068 4.068 18 C 0.000 4.000 19 H 0.127 0.873 20 C -0.062 4.062 21 N -0.177 5.177 22 C -0.038 4.038 23 C -0.570 4.570 24 H 0.045 0.955 25 C -0.194 4.194 26 N -0.593 5.593 27 Si 0.773 3.227 28 H -0.199 1.199 29 H -0.212 1.212 30 H -0.149 1.149 31 C -0.084 4.084 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.126 -23.139 6.635 38.562 hybrid contribution 1.448 0.026 0.721 1.618 sum -28.678 -23.112 7.356 37.559 Atomic orbital electron populations 1.21969 0.89005 1.06019 1.05422 1.21555 0.91890 0.82749 0.74590 1.90873 1.71199 1.31913 1.48233 1.48131 1.05916 1.06162 1.73522 1.20129 1.01126 0.86815 0.84593 1.26685 0.88183 0.96577 1.01640 1.74645 1.21992 1.21611 0.92307 1.85277 1.30469 1.57040 1.26292 1.29770 0.86938 0.89412 0.97137 1.20734 0.95336 1.06788 0.89242 1.71880 1.23980 1.24073 1.03024 1.21963 0.79788 1.00320 0.93969 0.86538 1.22750 0.96846 0.98995 0.97216 1.23371 0.96817 0.98157 0.90973 1.64815 1.20283 1.36659 1.01535 1.22400 0.89424 0.97314 0.97696 1.19058 0.97219 0.97987 0.85753 0.87305 1.29298 0.90693 0.91778 0.94474 1.81015 1.12009 1.11965 1.12748 1.19558 0.92376 0.95654 0.96220 1.21351 1.10967 1.19730 1.04995 0.95517 1.26056 0.96202 0.94690 1.02414 1.70090 1.19335 1.28637 1.41244 0.85666 0.79976 0.77979 0.79122 1.19917 1.21215 1.14904 1.23017 0.97575 0.90869 0.96910 0.88103 0.89184 0.87750 0.84138 0.85386 0.85738 0.86747 0.86879 0.89292 0.90886 0.92316 0.94208 0.93289 0.87195 0.95441 0.91967 0.92540 0.92903 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.00 71.23 0.71 -1.48 16 2 C 0.50 10.73 6.60 87.65 0.58 11.31 16 3 O -0.55 -17.19 13.98 -3.03 -0.04 -17.23 16 4 N -0.60 -10.43 2.44 -797.27 -1.95 -12.38 16 5 C 0.20 2.11 5.67 85.63 0.49 2.59 16 6 C 0.14 2.14 7.66 138.46 1.06 3.20 16 7 N -0.40 -7.07 12.16 -60.33 -0.73 -7.80 16 8 O 0.07 1.01 11.31 74.85 0.85 1.86 16 9 C 0.19 1.95 8.51 88.38 0.75 2.70 16 10 C -0.06 -0.01 10.51 71.23 0.75 0.74 16 11 N -0.49 -6.75 10.99 -303.22 -3.33 -10.08 16 12 C 0.14 2.98 3.46 45.87 0.16 3.14 16 13 H 0.12 1.90 7.76 -2.38 -0.02 1.88 16 14 C -0.12 -2.96 6.26 31.80 0.20 -2.76 16 15 C 0.04 1.11 4.35 86.65 0.38 1.49 16 16 N -0.51 -15.76 5.03 -883.03 -4.44 -20.20 16 17 C 0.06 1.87 4.71 86.30 0.41 2.28 16 18 C 0.02 0.84 2.29 -12.60 -0.03 0.81 16 19 H 0.11 4.38 8.14 -2.39 -0.02 4.36 16 20 C 0.25 10.88 9.67 89.45 0.87 11.74 16 21 N -0.50 -22.82 17.37 20.00 0.35 -22.47 16 22 C 0.00 0.04 3.49 29.85 0.10 0.14 16 23 C -0.53 -30.34 9.15 25.60 0.23 -30.11 16 24 H 0.03 1.72 7.83 -2.91 -0.02 1.70 16 25 C 0.00 0.18 5.47 84.65 0.46 0.65 16 26 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 27 Si 0.95 43.09 27.47 68.60 1.88 44.98 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 29 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 30 H -0.23 -8.91 6.54 99.48 0.65 -8.26 16 31 C 0.05 1.16 5.52 86.45 0.48 1.64 16 32 H 0.10 0.92 4.85 -2.39 -0.01 0.91 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.14 0.76 6.14 -2.39 -0.01 0.75 16 36 H 0.13 0.89 7.81 -2.39 -0.02 0.88 16 37 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.07 6.21 -2.39 -0.01 2.06 16 42 H 0.06 2.18 6.52 -2.39 -0.02 2.16 16 43 H 0.04 1.32 6.33 -2.39 -0.02 1.30 16 44 H 0.05 1.41 7.81 -2.39 -0.02 1.39 16 45 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 47 H 0.06 2.49 7.20 -2.39 -0.02 2.47 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 49 H 0.05 1.27 7.57 -2.38 -0.02 1.25 16 50 H 0.06 1.83 7.13 -2.39 -0.02 1.81 16 Total: -1.00 -83.58 402.96 1.39 -82.19 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.92 Total: 13.46 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.59 Total: 8.08 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -9.81 Total: -133.34 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.80 Total: -15.37 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Total: -83.58 1.39 -82.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089718297.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.240 kcal (2) G-P(sol) polarization free energy of solvation -83.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds