Wall clock time and date at job start Tue Mar 31 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48502 * 109.47182 * 269.99505 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99850 * 3 2 1 6 6 H 1.48503 * 109.47098 * 149.99863 * 3 2 1 7 7 C 1.37870 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99790 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00312 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47367 * 185.08878 * 9 7 2 11 11 C 1.46908 * 111.00045 * 195.86831 * 10 9 7 12 12 C 1.50706 * 109.46728 * 165.68508 * 11 10 9 13 13 N 1.30364 * 126.17896 * 99.12153 * 12 11 10 14 14 N 1.28668 * 109.53013 * 179.97438 * 13 12 11 15 15 C 1.31256 * 109.24911 * 0.02562 * 14 13 12 16 16 C 1.47810 * 126.37977 * 179.97438 * 15 14 13 17 17 C 1.39586 * 120.11189 * 179.70089 * 16 15 14 18 18 C 1.37907 * 119.87908 * 179.74376 * 17 16 15 19 19 C 1.38601 * 120.11375 * 0.52894 * 18 17 16 20 20 F 1.35103 * 119.87797 * 179.74230 * 19 18 17 21 21 C 1.38588 * 120.23872 * 359.72689 * 19 18 17 22 22 C 1.37902 * 120.11932 * 0.02562 * 21 19 18 23 23 O 1.34433 * 126.18622 * 278.80569 * 12 11 10 24 24 C 1.46901 * 110.99853 * 71.91614 * 10 9 7 25 25 C 1.53180 * 109.54418 * 205.91329 * 24 10 9 26 26 C 1.53088 * 109.16304 * 183.15078 * 25 24 10 27 27 O 1.42912 * 109.41411 * 57.61547 * 26 25 24 28 28 C 1.42904 * 114.09162 * 298.83941 * 27 26 25 29 29 C 1.53090 * 109.41771 * 61.15803 * 28 27 26 30 30 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46997 * 65.08908 * 9 7 2 32 32 H 1.08995 * 109.47149 * 305.09595 * 9 7 2 33 33 H 1.08999 * 109.47257 * 285.68659 * 11 10 9 34 34 H 1.09001 * 109.46978 * 45.69326 * 11 10 9 35 35 H 1.08001 * 120.06388 * 359.97323 * 17 16 15 36 36 H 1.07997 * 119.94784 * 180.27253 * 18 17 16 37 37 H 1.08003 * 119.94167 * 180.02562 * 21 19 18 38 38 H 1.08001 * 120.06349 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.54619 * 326.18623 * 24 10 9 40 40 H 1.08997 * 109.52376 * 303.06270 * 25 24 10 41 41 H 1.09000 * 109.51680 * 63.25101 * 25 24 10 42 42 H 1.09002 * 109.48329 * 297.63094 * 26 25 24 43 43 H 1.08997 * 109.47899 * 177.59277 * 26 25 24 44 44 H 1.08999 * 109.48498 * 301.17385 * 28 27 26 45 45 H 1.09001 * 109.48487 * 181.14756 * 28 27 26 46 46 H 1.08996 * 109.52278 * 182.47601 * 29 28 27 47 47 H 1.09004 * 109.51914 * 62.29757 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0012 -2.5735 -0.1222 11 6 5.4207 -2.6628 0.2459 12 6 5.7965 -4.1079 0.4505 13 7 6.4002 -4.8757 -0.4128 14 7 6.5638 -6.0471 0.0939 15 6 6.0653 -6.0668 1.3079 16 6 6.0499 -7.2215 2.2307 17 6 5.4879 -7.0944 3.5020 18 6 5.4714 -8.1763 4.3571 19 6 6.0214 -9.3849 3.9600 20 9 6.0073 -10.4402 4.8035 21 6 6.5855 -9.5149 2.7008 22 6 6.6027 -8.4409 1.8361 23 8 5.5750 -4.8363 1.5585 24 6 3.7748 -3.0944 -1.4769 25 6 3.6710 -4.6219 -1.4278 26 6 3.5141 -5.1610 -2.8520 27 8 4.6230 -4.7345 -3.6462 28 6 4.7425 -3.3156 -3.7669 29 6 4.9487 -2.7023 -2.3795 30 1 -0.4850 0.8400 -0.0004 31 1 3.8753 -0.7604 0.9316 32 1 3.8746 -0.6037 -0.8414 33 1 6.0303 -2.2383 -0.5518 34 1 5.5923 -2.1086 1.1686 35 1 5.0634 -6.1517 3.8142 36 1 5.0329 -8.0805 5.3394 37 1 7.0123 -10.4591 2.3962 38 1 7.0421 -8.5433 0.8548 39 1 2.8512 -2.6775 -1.8783 40 1 4.5750 -5.0343 -0.9797 41 1 2.8044 -4.9090 -0.8322 42 1 2.5890 -4.7802 -3.2850 43 1 3.4826 -6.2502 -2.8270 44 1 3.8336 -2.9106 -4.2119 45 1 5.5959 -3.0752 -4.4011 46 1 4.9961 -1.6167 -2.4644 47 1 5.8786 -3.0759 -1.9507 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095405143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:31 Heat of formation + Delta-G solvation = 4.474576 kcal Electronic energy + Delta-G solvation = -32856.097564 eV Core-core repulsion = 28342.613798 eV Total energy + Delta-G solvation = -4513.483766 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.32336 -44.17979 -39.57508 -39.28938 -36.92728 -36.12537 -33.14350 -32.64845 -31.67494 -31.52540 -30.77324 -30.34962 -28.03139 -25.99866 -24.46791 -24.00337 -23.34908 -23.26395 -22.07771 -21.87106 -20.96169 -19.42604 -18.30034 -17.61578 -17.25188 -16.97828 -16.70077 -16.37762 -16.00595 -15.94505 -15.74162 -15.16361 -14.79342 -14.64684 -14.36126 -14.10074 -14.09455 -14.03991 -13.62207 -13.56103 -13.12568 -13.03700 -12.97968 -12.60455 -12.34913 -12.17844 -11.89769 -11.85049 -11.69818 -11.50258 -11.05958 -11.00647 -10.87627 -10.84896 -10.65564 -10.48090 -10.19433 -10.00047 -9.65156 -9.61603 -9.52782 -9.22739 -8.71173 -8.57291 -7.73327 -6.17829 -4.16903 0.12930 0.77608 1.46560 2.17065 2.39546 3.17456 3.21992 3.25384 3.26856 3.63382 3.78109 4.13464 4.17147 4.28903 4.33430 4.40323 4.56032 4.74892 4.77950 5.06379 5.12329 5.14225 5.18215 5.21342 5.28903 5.31205 5.42670 5.46068 5.50976 5.55987 5.63119 5.63922 5.69289 5.74419 5.78170 5.84242 5.92718 5.94115 6.12858 6.20122 6.27312 6.32931 6.43179 6.50347 6.69295 6.76054 7.36990 7.48506 7.58798 7.70154 8.31096 8.47526 8.91777 9.42126 10.94983 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.002794 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.687869 B =10018.907765 C =11471.745415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.165 3.835 10 N -0.515 5.515 11 C 0.125 3.875 12 C 0.205 3.795 13 N -0.276 5.276 14 N -0.269 5.269 15 C 0.186 3.814 16 C -0.024 4.024 17 C -0.055 4.055 18 C -0.153 4.153 19 C 0.118 3.882 20 F -0.135 7.135 21 C -0.155 4.155 22 C -0.041 4.041 23 O -0.207 6.207 24 C 0.089 3.911 25 C -0.161 4.161 26 C 0.068 3.932 27 O -0.380 6.380 28 C 0.071 3.929 29 C -0.195 4.195 30 H 0.265 0.735 31 H 0.031 0.969 32 H -0.006 1.006 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.602 -14.023 3.633 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.040 3.960 10 N -0.239 5.239 11 C -0.005 4.005 12 C -0.005 4.005 13 N -0.124 5.124 14 N -0.117 5.117 15 C -0.022 4.022 16 C -0.026 4.026 17 C -0.075 4.075 18 C -0.172 4.172 19 C 0.098 3.902 20 F -0.113 7.113 21 C -0.173 4.173 22 C -0.061 4.061 23 O -0.086 6.086 24 C -0.020 4.020 25 C -0.199 4.199 26 C -0.009 4.009 27 O -0.299 6.299 28 C -0.006 4.006 29 C -0.234 4.234 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.012 0.988 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.860 -14.677 2.837 20.386 hybrid contribution -0.115 1.912 0.902 2.117 sum 13.746 -12.765 3.739 19.128 Atomic orbital electron populations 1.69876 1.06132 1.27020 1.50308 1.24877 0.94728 0.98766 0.94712 0.86900 0.80327 0.84140 0.78584 1.20203 1.21040 1.19194 1.20918 0.88214 0.94862 1.51043 0.90019 1.20262 0.97581 0.82392 0.95739 1.62142 1.10894 1.25579 1.25312 1.20838 0.93757 0.82396 1.03511 1.28185 0.94815 0.97826 0.79632 1.74455 1.16417 0.96953 1.24609 1.74687 1.18175 1.13810 1.05019 1.25196 0.97890 0.84757 0.94356 1.17231 1.04178 0.89117 0.92113 1.21197 0.95524 0.99366 0.91380 1.21085 1.02732 0.91481 1.01891 1.17935 0.99334 0.84338 0.88616 1.91531 1.94341 1.55275 1.70178 1.21083 1.02916 1.00703 0.92615 1.21048 0.95203 0.89677 1.00123 1.84881 1.62369 1.21011 1.40304 1.21738 0.98718 0.94222 0.87299 1.22582 1.03492 0.96267 0.97559 1.22472 0.88904 0.99168 0.90346 1.87897 1.49466 1.21642 1.70860 1.22403 1.01052 0.81323 0.95858 1.22979 1.01469 1.01187 0.97744 0.92474 0.95083 0.98779 0.89051 0.87789 0.83694 0.83676 0.83608 0.83182 0.88087 0.90671 0.91011 0.93319 0.89617 0.93363 0.89437 0.91061 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.96 55.43 0.77 -25.40 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 20.09 27.37 -169.99 -4.65 15.43 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -5.80 6.69 56.52 0.38 -5.42 16 7 C -0.51 -13.52 8.85 -34.44 -0.30 -13.83 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.17 3.59 3.72 -4.98 -0.02 3.57 16 10 N -0.52 -9.79 4.35 -229.29 -1.00 -10.79 16 11 C 0.12 1.95 5.10 -4.97 -0.03 1.93 16 12 C 0.20 3.26 5.71 -12.90 -0.07 3.19 16 13 N -0.28 -4.54 9.20 32.58 0.30 -4.24 16 14 N -0.27 -4.20 11.80 32.07 0.38 -3.82 16 15 C 0.19 2.62 7.99 -13.88 -0.11 2.51 16 16 C -0.02 -0.27 5.87 -104.98 -0.62 -0.89 16 17 C -0.05 -0.52 9.72 -39.20 -0.38 -0.90 16 18 C -0.15 -1.25 10.01 -39.57 -0.40 -1.65 16 19 C 0.12 1.00 7.30 -39.32 -0.29 0.72 16 20 F -0.13 -1.22 17.26 2.25 0.04 -1.18 16 21 C -0.15 -1.20 10.01 -39.58 -0.40 -1.60 16 22 C -0.04 -0.38 9.69 -39.20 -0.38 -0.76 16 23 O -0.21 -3.21 10.67 3.94 0.04 -3.17 16 24 C 0.09 1.60 2.04 -67.53 -0.14 1.47 16 25 C -0.16 -2.77 5.35 -26.59 -0.14 -2.91 16 26 C 0.07 1.07 6.84 37.20 0.25 1.32 16 27 O -0.38 -6.24 10.77 -35.23 -0.38 -6.62 16 28 C 0.07 1.05 6.84 37.20 0.25 1.30 16 29 C -0.19 -3.05 4.31 -26.59 -0.11 -3.17 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 32 H -0.01 -0.12 6.52 -51.93 -0.34 -0.46 16 33 H 0.09 1.31 5.52 -51.93 -0.29 1.02 16 34 H 0.10 1.46 7.76 -51.93 -0.40 1.06 16 35 H 0.15 1.29 7.93 -52.49 -0.42 0.87 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.15 1.28 7.86 -52.49 -0.41 0.87 16 39 H 0.10 2.09 7.07 -51.93 -0.37 1.72 16 40 H 0.08 1.32 3.49 -51.93 -0.18 1.14 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.08 7.51 -51.93 -0.39 0.69 16 47 H 0.09 1.34 4.81 -51.93 -0.25 1.09 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -30.65 379.95 -7.70 -38.35 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.96 Total: 3.55 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.97 Total: -7.85 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.45 Total: -44.26 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.34 Total: -9.79 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.65 Total: 15.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.65 -7.70 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.828 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds