Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48502 * 109.47182 * 269.99505 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99850 * 3 2 1 6 6 H 1.48503 * 109.47098 * 149.99863 * 3 2 1 7 7 C 1.37870 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99790 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00312 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47367 * 185.08878 * 9 7 2 11 11 C 1.46908 * 111.00045 * 195.86831 * 10 9 7 12 12 C 1.50706 * 109.46728 * 165.68508 * 11 10 9 13 13 N 1.30364 * 126.17896 * 99.12153 * 12 11 10 14 14 N 1.28668 * 109.53013 * 179.97438 * 13 12 11 15 15 C 1.31256 * 109.24911 * 0.02562 * 14 13 12 16 16 C 1.47810 * 126.37977 * 179.97438 * 15 14 13 17 17 C 1.39586 * 120.11189 * 179.70089 * 16 15 14 18 18 C 1.37907 * 119.87908 * 179.74376 * 17 16 15 19 19 C 1.38601 * 120.11375 * 0.52894 * 18 17 16 20 20 F 1.35103 * 119.87797 * 179.74230 * 19 18 17 21 21 C 1.38588 * 120.23872 * 359.72689 * 19 18 17 22 22 C 1.37902 * 120.11932 * 0.02562 * 21 19 18 23 23 O 1.34433 * 126.18622 * 278.80569 * 12 11 10 24 24 C 1.46901 * 110.99853 * 71.91614 * 10 9 7 25 25 C 1.53180 * 109.54418 * 205.91329 * 24 10 9 26 26 C 1.53088 * 109.16304 * 183.15078 * 25 24 10 27 27 O 1.42912 * 109.41411 * 57.61547 * 26 25 24 28 28 C 1.42904 * 114.09162 * 298.83941 * 27 26 25 29 29 C 1.53090 * 109.41771 * 61.15803 * 28 27 26 30 30 H 0.96994 * 120.00294 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46997 * 65.08908 * 9 7 2 32 32 H 1.08995 * 109.47149 * 305.09595 * 9 7 2 33 33 H 1.08999 * 109.47257 * 285.68659 * 11 10 9 34 34 H 1.09001 * 109.46978 * 45.69326 * 11 10 9 35 35 H 1.08001 * 120.06388 * 359.97323 * 17 16 15 36 36 H 1.07997 * 119.94784 * 180.27253 * 18 17 16 37 37 H 1.08003 * 119.94167 * 180.02562 * 21 19 18 38 38 H 1.08001 * 120.06349 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.54619 * 326.18623 * 24 10 9 40 40 H 1.08997 * 109.52376 * 303.06270 * 25 24 10 41 41 H 1.09000 * 109.51680 * 63.25101 * 25 24 10 42 42 H 1.09002 * 109.48329 * 297.63094 * 26 25 24 43 43 H 1.08997 * 109.47899 * 177.59277 * 26 25 24 44 44 H 1.08999 * 109.48498 * 301.17385 * 28 27 26 45 45 H 1.09001 * 109.48487 * 181.14756 * 28 27 26 46 46 H 1.08996 * 109.52278 * 182.47601 * 29 28 27 47 47 H 1.09004 * 109.51914 * 62.29757 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0012 -2.5735 -0.1222 11 6 5.4207 -2.6628 0.2459 12 6 5.7965 -4.1079 0.4505 13 7 6.4002 -4.8757 -0.4128 14 7 6.5638 -6.0471 0.0939 15 6 6.0653 -6.0668 1.3079 16 6 6.0499 -7.2215 2.2307 17 6 5.4879 -7.0944 3.5020 18 6 5.4714 -8.1763 4.3571 19 6 6.0214 -9.3849 3.9600 20 9 6.0073 -10.4402 4.8035 21 6 6.5855 -9.5149 2.7008 22 6 6.6027 -8.4409 1.8361 23 8 5.5750 -4.8363 1.5585 24 6 3.7748 -3.0944 -1.4769 25 6 3.6710 -4.6219 -1.4278 26 6 3.5141 -5.1610 -2.8520 27 8 4.6230 -4.7345 -3.6462 28 6 4.7425 -3.3156 -3.7669 29 6 4.9487 -2.7023 -2.3795 30 1 -0.4850 0.8400 -0.0004 31 1 3.8753 -0.7604 0.9316 32 1 3.8746 -0.6037 -0.8414 33 1 6.0303 -2.2383 -0.5518 34 1 5.5923 -2.1086 1.1686 35 1 5.0634 -6.1517 3.8142 36 1 5.0329 -8.0805 5.3394 37 1 7.0123 -10.4591 2.3962 38 1 7.0421 -8.5433 0.8548 39 1 2.8512 -2.6775 -1.8783 40 1 4.5750 -5.0343 -0.9797 41 1 2.8044 -4.9090 -0.8322 42 1 2.5890 -4.7802 -3.2850 43 1 3.4826 -6.2502 -2.8270 44 1 3.8336 -2.9106 -4.2119 45 1 5.5959 -3.0752 -4.4011 46 1 4.9961 -1.6167 -2.4644 47 1 5.8786 -3.0759 -1.9507 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095405143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -18.094072 kcal Electronic energy + Delta-G solvation = -32857.076214 eV Core-core repulsion = 28342.613798 eV Total energy + Delta-G solvation = -4514.462416 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.02607 -45.34547 -40.88362 -40.05508 -38.30488 -37.30639 -34.91593 -33.87635 -32.96855 -32.35258 -32.04691 -31.55219 -29.51519 -27.39360 -25.55156 -25.25312 -24.63378 -24.25736 -23.22826 -22.85375 -22.50781 -20.80331 -19.14638 -18.92091 -18.51304 -18.39860 -17.74578 -17.40259 -17.13211 -16.98029 -16.70587 -16.66446 -16.13435 -15.78090 -15.68546 -15.45415 -15.37097 -14.95411 -14.69210 -14.66410 -14.34464 -14.30824 -13.86067 -13.76962 -13.65361 -13.49943 -13.33575 -13.12283 -13.03750 -12.65328 -12.57171 -12.30666 -12.24778 -12.11491 -11.97978 -11.90036 -11.79385 -11.56826 -11.26530 -10.90308 -10.77255 -10.51216 -10.28610 -9.52228 -9.20161 -8.26813 -6.31074 -0.75144 0.10680 0.42104 1.08257 1.28039 1.37933 1.39703 1.49645 2.35626 2.46225 2.56330 2.88694 3.00246 3.07263 3.08784 3.26811 3.59030 3.75405 3.76599 3.79852 3.89140 4.04711 4.06711 4.09597 4.14984 4.21011 4.24192 4.32158 4.34797 4.48559 4.53291 4.58370 4.65544 4.71731 4.72065 4.82697 4.83969 4.89213 4.93795 4.96010 5.03614 5.04194 5.15813 5.19722 5.29056 5.51342 5.65199 5.88969 6.13418 6.24014 6.52250 6.75856 7.13859 7.32121 8.89906 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.002794 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.687869 B =10018.907765 C =11471.745415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.513 4.513 8 H 0.032 0.968 9 C 0.176 3.824 10 N -0.534 5.534 11 C 0.126 3.874 12 C 0.194 3.806 13 N -0.284 5.284 14 N -0.291 5.291 15 C 0.200 3.800 16 C -0.050 4.050 17 C -0.056 4.056 18 C -0.149 4.149 19 C 0.118 3.882 20 F -0.136 7.136 21 C -0.146 4.146 22 C -0.038 4.038 23 O -0.217 6.217 24 C 0.092 3.908 25 C -0.157 4.157 26 C 0.071 3.929 27 O -0.389 6.389 28 C 0.067 3.933 29 C -0.187 4.187 30 H 0.266 0.734 31 H 0.043 0.957 32 H 0.007 0.993 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.155 0.845 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.223 -14.235 4.005 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.551 4.551 8 H 0.050 0.950 9 C 0.050 3.950 10 N -0.258 5.258 11 C -0.003 4.003 12 C -0.016 4.016 13 N -0.133 5.133 14 N -0.139 5.139 15 C -0.008 4.008 16 C -0.053 4.053 17 C -0.076 4.076 18 C -0.168 4.168 19 C 0.098 3.902 20 F -0.114 7.114 21 C -0.164 4.164 22 C -0.058 4.058 23 O -0.096 6.096 24 C -0.016 4.016 25 C -0.195 4.195 26 C -0.006 4.006 27 O -0.308 6.308 28 C -0.010 4.010 29 C -0.225 4.225 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.190 0.810 38 H 0.173 0.827 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.132 0.868 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.516 -14.923 3.200 22.488 hybrid contribution -0.979 1.744 0.882 2.186 sum 15.537 -13.178 4.082 20.778 Atomic orbital electron populations 1.70053 1.08347 1.28112 1.52436 1.25826 0.95509 1.03111 0.94328 0.85755 0.79801 0.78442 0.79205 1.19244 1.21373 1.16192 1.21133 0.90950 0.92972 1.50083 0.95004 1.20007 0.94262 0.84248 0.96516 1.61933 1.13665 1.24063 1.26131 1.20917 0.91633 0.82776 1.04940 1.28129 0.95608 0.97982 0.79894 1.74376 1.16589 0.97336 1.24956 1.74642 1.19730 1.13648 1.05846 1.25797 0.95909 0.84807 0.94260 1.17433 1.06436 0.88880 0.92508 1.21256 0.95343 0.99978 0.91022 1.21276 1.02161 0.90865 1.02487 1.18094 0.98991 0.84316 0.88802 1.91536 1.94294 1.55322 1.70249 1.21312 1.02002 1.01209 0.91920 1.21139 0.94751 0.89283 1.00580 1.84878 1.62727 1.21620 1.40383 1.21607 0.98253 0.94337 0.87452 1.22538 1.02547 0.95970 0.98457 1.22479 0.88968 0.99976 0.89216 1.87886 1.49495 1.22676 1.70710 1.22578 1.02302 0.80432 0.95646 1.22908 1.00187 1.01751 0.97701 0.92499 0.93947 0.97575 0.87248 0.86026 0.83545 0.81634 0.81038 0.82730 0.91627 0.90493 0.93129 0.93212 0.88224 0.93256 0.86791 0.90219 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 13.96 21.44 0.30 -57.26 16 2 C 0.01 0.53 5.47 84.65 0.46 1.00 16 3 Si 0.94 40.93 27.37 68.60 1.88 42.81 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.24 -9.19 6.69 99.48 0.67 -8.53 16 7 C -0.51 -27.92 8.85 25.60 0.23 -27.70 16 8 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 9 C 0.18 7.49 3.72 85.56 0.32 7.81 16 10 N -0.53 -20.25 4.35 -879.34 -3.83 -24.08 16 11 C 0.13 3.78 5.10 85.56 0.44 4.21 16 12 C 0.19 6.05 5.71 88.33 0.50 6.56 16 13 N -0.28 -9.17 9.20 -165.32 -1.52 -10.69 16 14 N -0.29 -8.97 11.80 -166.30 -1.96 -10.93 16 15 C 0.20 5.57 7.99 87.31 0.70 6.27 16 16 C -0.05 -1.07 5.87 -20.10 -0.12 -1.19 16 17 C -0.06 -1.01 9.72 22.52 0.22 -0.79 16 18 C -0.15 -2.15 10.01 22.28 0.22 -1.93 16 19 C 0.12 1.74 7.30 22.44 0.16 1.90 16 20 F -0.14 -2.12 17.26 44.97 0.78 -1.35 16 21 C -0.15 -1.93 10.01 22.27 0.22 -1.70 16 22 C -0.04 -0.64 9.69 22.51 0.22 -0.42 16 23 O -0.22 -6.67 10.67 -8.80 -0.09 -6.76 16 24 C 0.09 3.37 2.04 45.03 0.09 3.46 16 25 C -0.16 -5.53 5.35 30.68 0.16 -5.36 16 26 C 0.07 2.22 6.84 72.01 0.49 2.71 16 27 O -0.39 -12.34 10.77 -148.98 -1.60 -13.95 16 28 C 0.07 1.88 6.84 72.01 0.49 2.37 16 29 C -0.19 -5.60 4.31 30.68 0.13 -5.47 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.04 1.73 7.16 -2.38 -0.02 1.71 16 32 H 0.01 0.26 6.52 -2.39 -0.02 0.25 16 33 H 0.11 2.88 5.52 -2.39 -0.01 2.86 16 34 H 0.12 3.16 7.76 -2.39 -0.02 3.14 16 35 H 0.15 2.52 7.93 -2.91 -0.02 2.50 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.16 2.43 7.86 -2.91 -0.02 2.41 16 39 H 0.07 2.84 7.07 -2.39 -0.02 2.83 16 40 H 0.08 2.72 3.49 -2.39 -0.01 2.71 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 46 H 0.08 2.26 7.51 -2.39 -0.02 2.24 16 47 H 0.09 2.65 4.81 -2.39 -0.01 2.64 16 Total: -1.00 -68.50 379.95 -0.13 -68.63 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.98 Total: 21.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.95 Total: -8.27 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -7.01 Total: -102.96 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.70 Total: -20.71 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.35 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.81 kcal Total: -68.50 -0.13 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.535 kcal (2) G-P(sol) polarization free energy of solvation -68.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds