Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48496 * 109.46835 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47121 * 29.99614 * 3 2 1 6 6 H 1.48500 * 109.47370 * 149.99730 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99868 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47114 * 184.74691 * 9 7 2 11 11 C 1.46899 * 111.00126 * 297.43886 * 10 9 7 12 12 C 1.50706 * 109.47127 * 288.51293 * 11 10 9 13 13 N 1.30369 * 126.18371 * 90.02438 * 12 11 10 14 14 N 1.28659 * 109.53107 * 179.97438 * 13 12 11 15 15 C 1.31253 * 109.25049 * 0.02562 * 14 13 12 16 16 C 1.47810 * 126.37833 * 179.97438 * 15 14 13 17 17 C 1.39591 * 120.11277 * 179.75098 * 16 15 14 18 18 C 1.37906 * 119.87655 * 179.70305 * 17 16 15 19 19 C 1.38598 * 120.11980 * 0.56976 * 18 17 16 20 20 F 1.35094 * 119.88479 * 179.74856 * 19 18 17 21 21 C 1.38595 * 120.23353 * 359.72337 * 19 18 17 22 22 C 1.37905 * 120.12241 * 359.97438 * 21 19 18 23 23 O 1.34434 * 126.18615 * 269.71583 * 12 11 10 24 24 C 1.46898 * 111.00279 * 61.39112 * 10 9 7 25 25 C 1.53006 * 109.46868 * 78.16477 * 24 10 9 26 26 H 1.09001 * 110.45399 * 50.65104 * 25 24 10 27 27 C 1.54510 * 110.50858 * 173.25098 * 25 24 10 28 28 C 1.54484 * 104.06151 * 118.78268 * 27 25 24 29 29 O 1.44431 * 104.79951 * 23.97899 * 28 27 25 30 30 C 1.44782 * 105.29641 * 319.45322 * 29 28 27 31 31 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46815 * 64.74828 * 9 7 2 33 33 H 1.08997 * 109.47045 * 304.74874 * 9 7 2 34 34 H 1.08999 * 109.47417 * 48.51304 * 11 10 9 35 35 H 1.09002 * 109.47640 * 168.51609 * 11 10 9 36 36 H 1.07991 * 120.05770 * 359.96946 * 17 16 15 37 37 H 1.07998 * 119.94040 * 180.30103 * 18 17 16 38 38 H 1.08006 * 119.93660 * 179.97438 * 21 19 18 39 39 H 1.07999 * 120.06150 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.47141 * 318.17088 * 24 10 9 41 41 H 1.08999 * 109.47516 * 198.16578 * 24 10 9 42 42 H 1.08995 * 110.51018 * 237.42565 * 27 25 24 43 43 H 1.09003 * 110.51268 * 0.02562 * 27 25 24 44 44 H 1.08996 * 110.37100 * 142.80600 * 28 27 25 45 45 H 1.08994 * 110.37158 * 265.14828 * 28 27 25 46 46 H 1.09005 * 110.42457 * 281.77939 * 30 29 28 47 47 H 1.09003 * 110.48748 * 159.33208 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2014 -3.6133 0.1158 11 6 3.1094 -3.6522 -1.0383 12 6 2.3514 -4.1071 -2.2588 13 7 1.7239 -3.3397 -3.1055 14 7 1.1885 -4.0621 -4.0258 15 6 1.4580 -5.3258 -3.7956 16 6 1.0277 -6.4776 -4.6160 17 6 1.3951 -7.7738 -4.2508 18 6 0.9858 -8.8453 -5.0164 19 6 0.2211 -8.6361 -6.1532 20 9 -0.1730 -9.6888 -6.9025 21 6 -0.1413 -7.3506 -6.5237 22 6 0.2574 -6.2725 -5.7618 23 8 2.2049 -5.3772 -2.6745 24 6 2.9538 -3.5354 1.3751 25 6 2.0785 -4.0401 2.5241 26 1 1.6480 -5.0106 2.2771 27 6 2.8983 -4.1281 3.8308 28 6 2.1824 -3.1510 4.7896 29 8 0.8318 -3.0626 4.2854 30 6 0.9641 -3.0194 2.8443 31 1 -0.4849 0.8401 -0.0004 32 1 0.6901 -2.5948 -0.9291 33 1 0.5618 -2.5208 0.8446 34 1 3.5168 -2.6566 -1.2139 35 1 3.9241 -4.3477 -0.8365 36 1 1.9950 -7.9375 -3.3679 37 1 1.2653 -9.8490 -4.7320 38 1 -0.7369 -7.1931 -7.4107 39 1 -0.0258 -5.2713 -6.0512 40 1 3.2401 -2.5008 1.5639 41 1 3.8491 -4.1528 1.3022 42 1 2.8730 -5.1421 4.2299 43 1 3.9270 -3.8117 3.6583 44 1 2.1831 -3.5471 5.8050 45 1 2.6624 -2.1729 4.7625 46 1 1.2587 -2.0215 2.5191 47 1 0.0300 -3.3148 2.3664 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095405147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = -11.749873 kcal Electronic energy + Delta-G solvation = -31954.328962 eV Core-core repulsion = 27440.141651 eV Total energy + Delta-G solvation = -4514.187311 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.26392 -43.80171 -39.27586 -39.17792 -36.95517 -35.83471 -32.97392 -32.70864 -31.92140 -31.58700 -30.00852 -28.69776 -27.54735 -26.21419 -24.35893 -24.22599 -23.46025 -22.27664 -22.12056 -21.76849 -20.47011 -19.73458 -18.20475 -17.46930 -17.09683 -16.74202 -16.54132 -16.25077 -15.93812 -15.90967 -15.16585 -15.12083 -14.70349 -14.58277 -14.30507 -14.28398 -13.96671 -13.95121 -13.51645 -13.13288 -12.93901 -12.87902 -12.53570 -12.28322 -12.05670 -11.91132 -11.59574 -11.41887 -11.36626 -11.24349 -11.02957 -10.97921 -10.85288 -10.52649 -10.39033 -10.32489 -10.13070 -10.01828 -9.93142 -9.70522 -9.54177 -9.22633 -8.50102 -8.44887 -7.55156 -6.07824 -4.16335 0.25835 0.84976 1.68663 2.38503 2.71173 3.26726 3.33290 3.33583 3.34540 3.82008 3.89102 4.30844 4.37406 4.40696 4.47113 4.58951 4.80149 4.84418 4.90427 5.06569 5.17785 5.24561 5.28792 5.32249 5.35203 5.52529 5.58680 5.60124 5.63035 5.70305 5.71617 5.83331 5.88807 5.96626 5.99314 6.04041 6.06558 6.11060 6.19148 6.20278 6.40921 6.42210 6.62435 6.75051 7.01071 7.22960 7.46701 7.70574 7.83797 7.95306 8.15584 8.64863 8.88678 9.50076 10.98573 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002533 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.001729 B =11049.831113 C =12850.023611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.168 3.832 10 N -0.542 5.542 11 C 0.146 3.854 12 C 0.206 3.794 13 N -0.261 5.261 14 N -0.268 5.268 15 C 0.175 3.825 16 C -0.017 4.017 17 C -0.059 4.059 18 C -0.154 4.154 19 C 0.114 3.886 20 F -0.136 7.136 21 C -0.153 4.153 22 C -0.043 4.043 23 O -0.220 6.220 24 C 0.068 3.932 25 C -0.108 4.108 26 H 0.080 0.920 27 C -0.148 4.148 28 C 0.046 3.954 29 O -0.388 6.388 30 C 0.049 3.951 31 H 0.264 0.736 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.576 -16.198 -4.495 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.074 0.926 9 C 0.043 3.957 10 N -0.267 5.267 11 C 0.016 3.984 12 C -0.004 4.004 13 N -0.108 5.108 14 N -0.117 5.117 15 C -0.033 4.033 16 C -0.019 4.019 17 C -0.079 4.079 18 C -0.173 4.173 19 C 0.094 3.906 20 F -0.115 7.115 21 C -0.172 4.172 22 C -0.062 4.062 23 O -0.099 6.099 24 C -0.060 4.060 25 C -0.127 4.127 26 H 0.099 0.901 27 C -0.187 4.187 28 C -0.031 4.031 29 O -0.307 6.307 30 C -0.026 4.026 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.472 -15.445 -4.930 16.818 hybrid contribution 1.384 0.528 0.218 1.497 sum 5.856 -14.918 -4.712 16.704 Atomic orbital electron populations 1.69918 1.05980 1.26994 1.48972 1.24864 0.94675 0.98954 0.94550 0.86703 0.79808 0.83902 0.78262 1.20498 1.21171 1.20032 1.21469 0.92858 0.91761 1.52992 0.92601 1.20236 0.91210 0.85007 0.99266 1.62460 1.16625 1.48262 0.99309 1.20516 0.91984 1.01510 0.84353 1.28270 0.97778 0.75737 0.98649 1.74649 1.09427 1.26090 1.00586 1.74743 1.18260 0.99033 1.19629 1.25136 0.95754 0.95245 0.87141 1.17245 1.01599 0.88279 0.94780 1.21140 0.97364 0.90232 0.99127 1.21042 1.00597 1.00650 0.94976 1.17911 0.97625 0.83965 0.91122 1.91520 1.88940 1.55805 1.75191 1.21092 1.03329 0.90438 1.02293 1.21089 0.93478 1.00223 0.91402 1.84809 1.55986 1.33474 1.35676 1.22072 0.94390 1.00940 0.88588 1.22418 0.96276 1.00248 0.93783 0.90140 1.22944 0.99922 1.00107 0.95702 1.23298 0.83916 0.98325 0.97584 1.89138 1.25116 1.95288 1.21181 1.23987 0.99116 1.00173 0.79339 0.92658 0.94641 0.92898 0.88161 0.89474 0.83921 0.83854 0.83644 0.83100 0.91721 0.92472 0.91233 0.90748 0.90086 0.92598 0.89415 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.55 -13.81 6.74 -34.44 -0.23 -14.04 16 8 H 0.06 1.35 6.10 -52.49 -0.32 1.03 16 9 C 0.17 3.94 4.46 -4.98 -0.02 3.92 16 10 N -0.54 -10.22 4.57 -237.52 -1.09 -11.30 16 11 C 0.15 2.51 5.43 -4.97 -0.03 2.48 16 12 C 0.21 3.84 7.30 -12.90 -0.09 3.75 16 13 N -0.26 -5.55 11.54 32.58 0.38 -5.17 16 14 N -0.27 -5.14 11.92 32.07 0.38 -4.76 16 15 C 0.18 2.83 7.99 -13.89 -0.11 2.72 16 16 C -0.02 -0.21 5.87 -104.98 -0.62 -0.83 16 17 C -0.06 -0.58 9.72 -39.20 -0.38 -0.96 16 18 C -0.15 -1.30 10.01 -39.57 -0.40 -1.70 16 19 C 0.11 1.04 7.30 -39.32 -0.29 0.75 16 20 F -0.14 -1.29 17.26 2.25 0.04 -1.25 16 21 C -0.15 -1.35 10.01 -39.57 -0.40 -1.74 16 22 C -0.04 -0.45 9.69 -39.20 -0.38 -0.83 16 23 O -0.22 -3.68 10.67 3.96 0.04 -3.63 16 24 C 0.07 1.11 4.27 -3.82 -0.02 1.09 16 25 C -0.11 -1.69 3.33 -89.05 -0.30 -1.99 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 C -0.15 -1.90 6.74 -25.16 -0.17 -2.07 16 28 C 0.05 0.65 7.63 37.94 0.29 0.94 16 29 O -0.39 -7.08 11.66 -35.23 -0.41 -7.49 16 30 C 0.05 0.93 5.27 37.93 0.20 1.13 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.96 6.88 -51.93 -0.36 0.60 16 33 H 0.05 1.31 4.28 -51.93 -0.22 1.09 16 34 H 0.10 1.86 6.27 -51.93 -0.33 1.53 16 35 H 0.09 1.17 7.67 -51.93 -0.40 0.78 16 36 H 0.14 1.25 7.93 -52.49 -0.42 0.83 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.15 1.58 7.86 -52.49 -0.41 1.17 16 40 H 0.06 1.18 6.08 -51.93 -0.32 0.87 16 41 H 0.06 0.77 7.61 -51.93 -0.40 0.38 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.85 7.73 -51.93 -0.40 0.44 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.90 6.42 -51.93 -0.33 1.56 16 47 H 0.09 1.80 7.22 -51.93 -0.37 1.42 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -30.55 388.05 -8.07 -38.62 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.95 Total: 3.25 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.03 Total: -5.53 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.41 Total: -45.52 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.37 Total: -11.12 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.55 -8.07 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.873 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds