Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48496 * 109.46835 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47121 * 29.99614 * 3 2 1 6 6 H 1.48500 * 109.47370 * 149.99730 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99868 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47114 * 184.74691 * 9 7 2 11 11 C 1.46899 * 111.00126 * 297.43886 * 10 9 7 12 12 C 1.50706 * 109.47127 * 288.51293 * 11 10 9 13 13 N 1.30369 * 126.18371 * 90.02438 * 12 11 10 14 14 N 1.28659 * 109.53107 * 179.97438 * 13 12 11 15 15 C 1.31253 * 109.25049 * 0.02562 * 14 13 12 16 16 C 1.47810 * 126.37833 * 179.97438 * 15 14 13 17 17 C 1.39591 * 120.11277 * 179.75098 * 16 15 14 18 18 C 1.37906 * 119.87655 * 179.70305 * 17 16 15 19 19 C 1.38598 * 120.11980 * 0.56976 * 18 17 16 20 20 F 1.35094 * 119.88479 * 179.74856 * 19 18 17 21 21 C 1.38595 * 120.23353 * 359.72337 * 19 18 17 22 22 C 1.37905 * 120.12241 * 359.97438 * 21 19 18 23 23 O 1.34434 * 126.18615 * 269.71583 * 12 11 10 24 24 C 1.46898 * 111.00279 * 61.39112 * 10 9 7 25 25 C 1.53006 * 109.46868 * 78.16477 * 24 10 9 26 26 H 1.09001 * 110.45399 * 50.65104 * 25 24 10 27 27 C 1.54510 * 110.50858 * 173.25098 * 25 24 10 28 28 C 1.54484 * 104.06151 * 118.78268 * 27 25 24 29 29 O 1.44431 * 104.79951 * 23.97899 * 28 27 25 30 30 C 1.44782 * 105.29641 * 319.45322 * 29 28 27 31 31 H 0.96999 * 119.99641 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46815 * 64.74828 * 9 7 2 33 33 H 1.08997 * 109.47045 * 304.74874 * 9 7 2 34 34 H 1.08999 * 109.47417 * 48.51304 * 11 10 9 35 35 H 1.09002 * 109.47640 * 168.51609 * 11 10 9 36 36 H 1.07991 * 120.05770 * 359.96946 * 17 16 15 37 37 H 1.07998 * 119.94040 * 180.30103 * 18 17 16 38 38 H 1.08006 * 119.93660 * 179.97438 * 21 19 18 39 39 H 1.07999 * 120.06150 * 180.02562 * 22 21 19 40 40 H 1.09001 * 109.47141 * 318.17088 * 24 10 9 41 41 H 1.08999 * 109.47516 * 198.16578 * 24 10 9 42 42 H 1.08995 * 110.51018 * 237.42565 * 27 25 24 43 43 H 1.09003 * 110.51268 * 0.02562 * 27 25 24 44 44 H 1.08996 * 110.37100 * 142.80600 * 28 27 25 45 45 H 1.08994 * 110.37158 * 265.14828 * 28 27 25 46 46 H 1.09005 * 110.42457 * 281.77939 * 30 29 28 47 47 H 1.09003 * 110.48748 * 159.33208 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2014 -3.6133 0.1158 11 6 3.1094 -3.6522 -1.0383 12 6 2.3514 -4.1071 -2.2588 13 7 1.7239 -3.3397 -3.1055 14 7 1.1885 -4.0621 -4.0258 15 6 1.4580 -5.3258 -3.7956 16 6 1.0277 -6.4776 -4.6160 17 6 1.3951 -7.7738 -4.2508 18 6 0.9858 -8.8453 -5.0164 19 6 0.2211 -8.6361 -6.1532 20 9 -0.1730 -9.6888 -6.9025 21 6 -0.1413 -7.3506 -6.5237 22 6 0.2574 -6.2725 -5.7618 23 8 2.2049 -5.3772 -2.6745 24 6 2.9538 -3.5354 1.3751 25 6 2.0785 -4.0401 2.5241 26 1 1.6480 -5.0106 2.2771 27 6 2.8983 -4.1281 3.8308 28 6 2.1824 -3.1510 4.7896 29 8 0.8318 -3.0626 4.2854 30 6 0.9641 -3.0194 2.8443 31 1 -0.4849 0.8401 -0.0004 32 1 0.6901 -2.5948 -0.9291 33 1 0.5618 -2.5208 0.8446 34 1 3.5168 -2.6566 -1.2139 35 1 3.9241 -4.3477 -0.8365 36 1 1.9950 -7.9375 -3.3679 37 1 1.2653 -9.8490 -4.7320 38 1 -0.7369 -7.1931 -7.4107 39 1 -0.0258 -5.2713 -6.0512 40 1 3.2401 -2.5008 1.5639 41 1 3.8491 -4.1528 1.3022 42 1 2.8730 -5.1421 4.2299 43 1 3.9270 -3.8117 3.6583 44 1 2.1831 -3.5471 5.8050 45 1 2.6624 -2.1729 4.7625 46 1 1.2587 -2.0215 2.5191 47 1 0.0300 -3.3148 2.3664 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095405147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -35.017101 kcal Electronic energy + Delta-G solvation = -31955.337905 eV Core-core repulsion = 27440.141651 eV Total energy + Delta-G solvation = -4515.196254 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.01640 -45.16169 -40.55079 -40.05760 -38.45370 -37.21267 -34.64708 -34.19103 -33.15512 -32.34606 -31.20300 -29.94212 -29.31230 -27.57810 -26.11412 -25.34523 -24.45375 -23.53560 -23.37185 -22.80123 -21.99697 -21.07703 -19.10141 -18.66180 -18.47070 -18.34968 -17.61260 -17.41793 -17.14150 -16.73456 -16.67810 -16.49210 -16.22468 -15.76781 -15.68672 -15.59860 -15.34054 -14.67839 -14.47457 -14.34426 -14.26038 -13.81687 -13.74229 -13.56557 -13.45694 -13.36723 -13.01827 -12.95231 -12.82189 -12.72879 -12.60378 -12.19839 -12.13862 -12.00464 -11.98503 -11.84552 -11.61581 -11.54243 -11.28843 -11.13982 -10.63197 -10.52099 -10.27562 -9.55796 -9.17522 -8.11068 -6.25329 -0.71438 0.11708 0.50028 1.11607 1.37924 1.39175 1.40381 1.47279 2.40594 2.47697 2.67533 3.07963 3.10161 3.19813 3.25342 3.46479 3.63065 3.77118 3.80204 3.88033 3.98292 4.08830 4.12177 4.21951 4.24912 4.36061 4.37166 4.52895 4.55140 4.63276 4.68543 4.74079 4.79470 4.84863 4.89830 4.91764 4.96349 5.05036 5.08076 5.12492 5.13730 5.22329 5.33107 5.41113 5.44680 5.66468 5.78660 5.95036 6.00517 6.18713 6.35562 6.91067 7.27004 7.44157 8.93794 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002533 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.001729 B =11049.831113 C =12850.023611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.186 3.814 10 N -0.541 5.541 11 C 0.148 3.852 12 C 0.199 3.801 13 N -0.309 5.309 14 N -0.310 5.310 15 C 0.198 3.802 16 C -0.048 4.048 17 C -0.051 4.051 18 C -0.145 4.145 19 C 0.118 3.882 20 F -0.135 7.135 21 C -0.147 4.147 22 C -0.045 4.045 23 O -0.214 6.214 24 C 0.070 3.930 25 C -0.102 4.102 26 H 0.083 0.917 27 C -0.135 4.135 28 C 0.035 3.965 29 O -0.411 6.411 30 C 0.056 3.944 31 H 0.260 0.740 32 H -0.006 1.006 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.045 0.955 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 -19.266 -4.043 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.060 3.940 10 N -0.266 5.266 11 C 0.018 3.982 12 C -0.012 4.012 13 N -0.155 5.155 14 N -0.157 5.157 15 C -0.011 4.011 16 C -0.051 4.051 17 C -0.070 4.070 18 C -0.163 4.163 19 C 0.098 3.902 20 F -0.113 7.113 21 C -0.166 4.166 22 C -0.065 4.065 23 O -0.094 6.094 24 C -0.057 4.057 25 C -0.121 4.121 26 H 0.102 0.898 27 C -0.173 4.173 28 C -0.041 4.041 29 O -0.331 6.331 30 C -0.021 4.021 31 H 0.069 0.931 32 H 0.012 0.988 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.191 0.809 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.063 0.937 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.007 -18.516 -4.481 20.298 hybrid contribution 0.552 1.279 0.003 1.393 sum 7.559 -17.237 -4.478 19.347 Atomic orbital electron populations 1.70064 1.07625 1.27346 1.51366 1.25659 0.95305 1.02393 0.94900 0.85764 0.79222 0.80086 0.77893 1.20933 1.21525 1.18146 1.21796 0.93340 0.92254 1.50410 0.91610 1.19784 0.91731 0.86234 0.96273 1.62342 1.17303 1.45713 1.01214 1.20655 0.92405 1.02052 0.83043 1.28431 0.97819 0.76182 0.98810 1.74543 1.10880 1.28064 1.02024 1.74643 1.20280 1.00361 1.20379 1.25881 0.93385 0.95516 0.86280 1.17449 1.03997 0.88025 0.95583 1.21285 0.96884 0.89306 0.99539 1.21310 0.99416 1.01533 0.94047 1.18071 0.97061 0.83937 0.91105 1.91533 1.88857 1.55726 1.75187 1.21267 1.02928 0.89823 1.02564 1.21109 0.93412 1.00694 0.91273 1.84798 1.56203 1.32489 1.35872 1.22178 0.95591 1.00769 0.87210 1.22387 0.95541 0.98919 0.95292 0.89813 1.22926 1.00146 1.01148 0.93115 1.23618 0.82072 0.99072 0.99367 1.89108 1.28032 1.95398 1.20571 1.23680 0.99175 0.99230 0.79969 0.93134 0.98798 0.94670 0.89749 0.84644 0.82599 0.80908 0.81387 0.83754 0.93681 0.88074 0.88739 0.88499 0.87232 0.92843 0.93047 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 13.29 21.45 0.28 -55.13 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.54 -27.80 6.74 25.60 0.17 -27.63 16 8 H 0.07 3.20 6.10 -2.91 -0.02 3.18 16 9 C 0.19 9.16 4.46 85.56 0.38 9.54 16 10 N -0.54 -20.30 4.57 -905.36 -4.14 -24.45 16 11 C 0.15 4.94 5.43 85.56 0.46 5.41 16 12 C 0.20 7.55 7.30 88.33 0.64 8.19 16 13 N -0.31 -13.83 11.54 -165.32 -1.91 -15.73 16 14 N -0.31 -12.49 11.92 -166.31 -1.98 -14.47 16 15 C 0.20 6.50 7.99 87.31 0.70 7.20 16 16 C -0.05 -1.16 5.87 -20.09 -0.12 -1.28 16 17 C -0.05 -0.88 9.72 22.52 0.22 -0.66 16 18 C -0.14 -1.98 10.01 22.28 0.22 -1.75 16 19 C 0.12 1.82 7.30 22.44 0.16 1.99 16 20 F -0.13 -2.15 17.26 44.97 0.78 -1.37 16 21 C -0.15 -2.31 10.01 22.28 0.22 -2.09 16 22 C -0.05 -0.94 9.69 22.51 0.22 -0.72 16 23 O -0.21 -7.09 10.67 -8.74 -0.09 -7.18 16 24 C 0.07 2.13 4.27 86.31 0.37 2.50 16 25 C -0.10 -3.05 3.33 -9.78 -0.03 -3.08 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 C -0.14 -2.99 6.74 31.61 0.21 -2.78 16 28 C 0.03 0.92 7.63 72.49 0.55 1.47 16 29 O -0.41 -15.08 11.66 -148.98 -1.74 -16.82 16 30 C 0.06 2.16 5.27 72.48 0.38 2.54 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H -0.01 -0.35 6.88 -2.39 -0.02 -0.37 16 33 H 0.04 1.87 4.28 -2.39 -0.01 1.86 16 34 H 0.08 3.11 6.27 -2.39 -0.01 3.10 16 35 H 0.14 3.17 7.67 -2.39 -0.02 3.16 16 36 H 0.16 2.29 7.93 -2.92 -0.02 2.27 16 37 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.14 3.14 7.86 -2.91 -0.02 3.12 16 40 H 0.04 1.59 6.08 -2.39 -0.01 1.57 16 41 H 0.10 2.26 7.61 -2.39 -0.02 2.25 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 1.75 7.73 -2.39 -0.02 1.73 16 44 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 2.35 6.42 -2.38 -0.02 2.34 16 47 H 0.06 2.76 7.22 -2.39 -0.02 2.74 16 Total: -1.00 -72.24 388.05 -0.52 -72.76 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 1.02 Total: 16.46 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.24 Total: 0.25 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -7.75 Total: -109.78 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.83 Total: -24.00 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.24 -0.52 -72.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095405147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.740 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds