Wall clock time and date at job start Tue Mar 31 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46705 * 2 1 4 4 C 1.37841 * 119.99591 * 179.72580 * 3 2 1 5 5 N 1.30223 * 124.75128 * 0.30602 * 4 3 2 6 6 C 1.30880 * 117.26735 * 179.97438 * 5 4 3 7 7 C 1.36711 * 114.02850 * 359.97438 * 6 5 4 8 8 C 1.46227 * 126.11413 * 180.02562 * 7 6 5 9 9 O 1.21748 * 119.99466 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00251 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99977 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46950 * 180.02562 * 11 10 8 13 13 O 1.42906 * 109.46717 * 65.00591 * 12 11 10 14 14 C 1.35681 * 116.99540 * 179.97438 * 13 12 11 15 15 C 1.39311 * 119.81875 * 359.72036 * 14 13 12 16 16 C 1.36439 * 120.18121 * 179.76135 * 15 14 13 17 17 C 1.40831 * 119.81193 * 0.51809 * 16 15 14 18 18 C 1.41214 * 120.17681 * 179.71872 * 17 16 15 19 19 H 1.08002 * 120.00176 * 204.55959 * 18 17 16 20 20 C 1.39895 * 120.00083 * 24.56779 * 18 17 16 21 21 N 1.30878 * 120.00008 * 17.92103 * 20 18 17 22 22 Si 1.86800 * 119.99679 * 197.92368 * 20 18 17 23 23 H 1.48502 * 109.47346 * 90.00106 * 22 20 18 24 24 H 1.48504 * 109.46820 * 209.99673 * 22 20 18 25 25 H 1.48493 * 109.47500 * 329.99559 * 22 20 18 26 26 C 1.40826 * 119.64213 * 359.73621 * 17 16 15 27 27 C 1.36437 * 119.81323 * 0.02562 * 26 17 16 28 28 S 1.70923 * 124.74303 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47253 * 299.99326 * 1 2 3 31 31 H 1.08993 * 109.48029 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.47253 * 240.00674 * 2 1 3 33 33 H 1.08994 * 109.47544 * 120.00368 * 2 1 3 34 34 H 0.96996 * 120.00289 * 0.02562 * 3 2 1 35 35 H 1.08001 * 122.99059 * 179.97438 * 6 5 4 36 36 H 0.97002 * 119.99645 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47339 * 300.00181 * 11 10 8 38 38 H 1.08999 * 109.46510 * 60.00740 * 11 10 8 39 39 H 1.09002 * 109.47225 * 185.00160 * 12 11 10 40 40 H 1.08996 * 109.47598 * 305.00757 * 12 11 10 41 41 H 1.07997 * 119.90747 * 0.02879 * 15 14 13 42 42 H 1.08005 * 120.09268 * 180.25435 * 16 15 14 43 43 H 0.97001 * 120.00058 * 180.02562 * 21 20 18 44 44 H 1.08009 * 120.09510 * 179.97438 * 26 17 16 45 45 H 1.08006 * 119.90531 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3734 1.6332 0.0057 5 7 4.2987 0.7169 0.0056 6 6 5.5434 1.1216 0.0110 7 6 5.6866 2.4812 0.0154 8 6 6.9517 3.2145 0.0213 9 8 8.0071 2.6075 0.0221 10 7 6.9494 4.5622 0.0248 11 6 8.2169 5.2968 0.0312 12 6 7.9348 6.8006 0.0347 13 8 7.2833 7.1601 1.2548 14 6 6.9614 8.4679 1.4189 15 6 7.2745 9.3888 0.4216 16 6 6.9498 10.7049 0.5768 17 6 6.3062 11.1331 1.7540 18 6 5.9720 12.4944 1.9252 19 1 5.8572 12.9014 2.9190 20 6 5.7893 13.3158 0.8076 21 7 5.5785 12.7827 -0.3689 22 14 5.8464 15.1735 0.9946 23 1 7.2410 15.6475 0.8052 24 1 4.9677 15.8009 -0.0250 25 1 5.3760 15.5492 2.3521 26 6 5.9980 10.1966 2.7595 27 6 6.3251 8.8833 2.5865 28 16 4.0745 3.1920 0.0058 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.3879 2.1185 0.0004 35 1 6.3827 0.4420 0.0118 36 1 6.1085 5.0458 0.0237 37 1 8.7858 5.0322 0.9225 38 1 8.7920 5.0368 -0.8575 39 1 8.8743 7.3468 -0.0501 40 1 7.2912 7.0515 -0.8084 41 1 7.7718 9.0594 -0.4787 42 1 7.1896 11.4170 -0.1990 43 1 5.4522 13.3522 -1.1439 44 1 5.5048 10.5170 3.6654 45 1 6.0898 8.1638 3.3569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095429496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:59 Heat of formation + Delta-G solvation = -11.368144 kcal Electronic energy + Delta-G solvation = -27673.836265 eV Core-core repulsion = 23590.045588 eV Total energy + Delta-G solvation = -4083.790677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.23859 -39.39793 -38.72755 -36.79099 -36.54723 -34.71755 -33.34490 -31.79306 -30.46766 -29.68719 -29.23220 -28.39092 -25.35827 -24.85318 -23.90559 -23.01772 -21.51984 -21.06400 -20.34177 -19.78327 -19.36068 -17.42252 -17.15070 -17.09573 -16.90950 -15.96913 -15.84112 -15.48283 -15.39784 -15.15827 -14.77271 -14.62411 -14.29736 -14.08147 -13.96989 -13.58685 -13.16006 -12.88377 -12.81460 -12.39580 -12.38288 -12.30609 -12.20568 -11.94058 -11.72882 -11.47191 -11.24821 -11.09215 -11.01703 -10.65030 -10.59301 -10.30613 -9.99782 -9.84320 -9.81701 -9.63899 -9.42322 -9.12342 -9.05717 -8.08581 -7.70199 -7.07090 -6.77319 -4.29732 0.29589 0.69087 1.40072 2.40025 2.69426 2.72499 2.92220 3.05767 3.09114 3.12952 3.18318 3.21418 3.91582 3.97468 4.21649 4.44121 4.57188 4.57687 4.82572 4.85379 5.03829 5.17955 5.25871 5.27821 5.38490 5.48712 5.56304 5.63115 5.64999 5.71334 5.90283 6.06641 6.23222 6.34204 6.35875 6.56958 6.66592 6.84715 7.02548 7.23594 7.35973 7.39930 7.51203 7.58388 7.85910 7.96013 8.10264 8.12783 8.38502 8.60175 8.85971 8.94389 10.17420 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.001810 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.970543 B =15464.593348 C =17063.111940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.126 3.874 3 N -0.686 5.686 4 C 0.324 3.676 5 N -0.554 5.554 6 C 0.175 3.825 7 C -0.341 4.341 8 C 0.604 3.396 9 O -0.541 6.541 10 N -0.719 5.719 11 C 0.126 3.874 12 C 0.053 3.947 13 O -0.327 6.327 14 C -0.012 4.012 15 C -0.173 4.173 16 C -0.134 4.134 17 C 0.088 3.912 18 C -0.462 4.462 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.197 4.197 27 C -0.111 4.111 28 S 0.141 5.859 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.188 0.812 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.279 0.721 44 H 0.099 0.901 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -19.981 -3.276 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.325 5.325 4 C -0.045 4.045 5 N -0.279 5.279 6 C 0.016 3.984 7 C -0.467 4.467 8 C 0.390 3.610 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.003 3.997 12 C -0.023 4.023 13 O -0.244 6.244 14 C -0.055 4.055 15 C -0.192 4.192 16 C -0.153 4.153 17 C 0.085 3.915 18 C -0.492 4.492 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.426 5.426 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.216 4.216 27 C -0.130 4.130 28 S 0.392 5.608 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.205 0.795 36 H 0.237 0.763 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.559 -20.164 -3.399 21.801 hybrid contribution 0.018 0.987 -0.258 1.021 sum -7.541 -19.177 -3.658 20.929 Atomic orbital electron populations 1.22036 0.94119 1.03605 1.02786 1.21419 0.94150 0.81480 1.02854 1.44042 1.00324 1.09429 1.78690 1.23891 0.90672 0.93574 0.96382 1.66242 0.99771 1.34272 1.27608 1.22077 0.92825 0.91898 0.91557 1.25257 0.95771 0.97550 1.28168 1.16533 0.86726 0.81655 0.76055 1.90828 1.31367 1.68366 1.51500 1.45841 1.10248 1.05668 1.75289 1.21468 0.85752 0.89263 1.03241 1.22723 0.98116 0.93489 0.88010 1.85836 1.75830 1.25144 1.37540 1.18535 1.08279 0.81341 0.97361 1.20611 1.05787 0.95024 0.97760 1.20943 1.00611 0.93892 0.99899 1.17609 0.89707 0.93011 0.91146 1.19489 1.42213 0.93838 0.93696 0.90456 1.25880 0.92286 1.01301 0.94739 1.69834 1.34464 1.37832 1.00422 0.86323 0.79040 0.82221 0.79193 1.19334 1.20403 1.18652 1.20596 1.07782 0.91954 1.01311 1.19607 1.02365 0.95807 0.95213 1.84148 0.98679 1.06027 1.71939 0.90325 0.91757 0.91783 0.91153 0.91138 0.74581 0.79532 0.76257 0.90261 0.89660 0.91119 0.92307 0.88739 0.86123 0.90969 0.88237 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.03 37.16 0.37 -0.15 16 2 C 0.13 0.70 6.64 -4.04 -0.03 0.67 16 3 N -0.69 -4.61 5.68 -62.40 -0.35 -4.96 16 4 C 0.32 3.15 8.05 -87.99 -0.71 2.44 16 5 N -0.55 -6.28 10.06 -14.77 -0.15 -6.43 16 6 C 0.18 2.06 11.14 -18.51 -0.21 1.85 16 7 C -0.34 -4.22 6.50 -36.93 -0.24 -4.46 16 8 C 0.60 8.66 7.77 -13.05 -0.10 8.56 16 9 O -0.54 -9.14 16.87 5.15 0.09 -9.06 16 10 N -0.72 -9.68 5.50 -61.76 -0.34 -10.02 16 11 C 0.13 1.66 6.06 -4.04 -0.02 1.64 16 12 C 0.05 0.78 4.86 37.16 0.18 0.97 16 13 O -0.33 -6.19 10.07 -18.75 -0.19 -6.38 16 14 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 15 C -0.17 -3.89 8.96 -39.83 -0.36 -4.24 16 16 C -0.13 -3.38 8.64 -39.25 -0.34 -3.72 16 17 C 0.09 2.28 5.57 -106.81 -0.60 1.69 16 18 C -0.46 -12.03 9.04 -37.83 -0.34 -12.37 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 20 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 21 N -0.80 -20.24 10.96 55.55 0.61 -19.63 16 22 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.20 -4.73 9.74 -39.25 -0.38 -5.11 16 27 C -0.11 -2.50 9.92 -39.83 -0.40 -2.90 16 28 S 0.14 1.41 22.33 -107.50 -2.40 -0.99 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.42 1.89 8.59 -40.82 -0.35 1.54 16 35 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.40 5.18 7.64 -40.82 -0.31 4.87 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.99 7.63 -51.93 -0.40 0.60 16 40 H 0.06 0.84 7.66 -51.93 -0.40 0.45 16 41 H 0.09 1.87 6.27 -52.49 -0.33 1.54 16 42 H 0.12 3.14 6.16 -52.48 -0.32 2.81 16 43 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 44 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 45 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -30.95 398.48 -11.16 -42.11 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.89 Total: 9.92 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.51 Total: -13.92 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.23 Total: -41.04 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.10 Total: -15.43 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.40 Total: -0.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.95 -11.16 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095429496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.742 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds