Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48494 * 109.46902 * 270.00224 * 3 2 1 5 5 H 1.48499 * 109.46728 * 30.00249 * 3 2 1 6 6 H 1.48496 * 109.47127 * 149.99707 * 3 2 1 7 7 C 1.39946 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 197.84566 * 7 2 1 9 9 C 1.41392 * 120.00361 * 17.85212 * 7 2 1 10 10 C 1.40707 * 120.24753 * 204.38229 * 9 7 2 11 11 C 1.37620 * 119.74731 * 180.02562 * 10 9 7 12 12 C 1.38628 * 120.24679 * 0.02562 * 11 10 9 13 13 S 1.76209 * 119.74695 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40047 * 336.45747 * 13 12 11 15 15 O 1.42102 * 106.39921 * 203.53527 * 13 12 11 16 16 N 1.65600 * 107.21730 * 89.99864 * 13 12 11 17 17 C 1.46499 * 120.00162 * 65.27203 * 16 13 12 18 18 C 1.52999 * 109.47368 * 164.72498 * 17 16 13 19 19 H 1.09001 * 109.46978 * 305.00139 * 18 17 16 20 20 O 1.42902 * 109.46945 * 64.99991 * 18 17 16 21 21 C 1.52997 * 109.47443 * 185.00148 * 18 17 16 22 22 C 1.50703 * 109.47315 * 174.99970 * 21 18 17 23 23 C 1.38241 * 119.99966 * 269.72826 * 22 21 18 24 24 C 1.38232 * 119.99866 * 179.76244 * 23 22 21 25 25 C 1.38237 * 119.99752 * 0.51038 * 24 23 22 26 26 C 1.38234 * 120.00262 * 359.74468 * 25 24 23 27 27 C 1.38230 * 119.99795 * 0.02562 * 26 25 24 28 28 C 1.38628 * 120.50340 * 0.24768 * 12 11 10 29 29 C 1.37626 * 120.24793 * 359.44927 * 28 12 11 30 30 H 0.97001 * 119.99824 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.12835 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.87372 * 179.97438 * 11 10 9 33 33 H 0.97003 * 120.00221 * 245.00507 * 16 13 12 34 34 H 1.09000 * 109.47304 * 284.72557 * 17 16 13 35 35 H 1.09001 * 109.47275 * 44.72445 * 17 16 13 36 36 H 0.96697 * 113.99711 * 60.00796 * 20 18 17 37 37 H 1.08998 * 109.47148 * 294.99899 * 21 18 17 38 38 H 1.09009 * 109.47205 * 55.00217 * 21 18 17 39 39 H 1.08001 * 119.99617 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.99658 * 180.22617 * 24 23 22 41 41 H 1.07999 * 119.99599 * 179.71898 * 25 24 23 42 42 H 1.08000 * 120.00040 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99913 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.87846 * 179.70710 * 28 12 11 45 45 H 1.07993 * 120.12580 * 180.27342 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8257 -3.6498 0.0854 11 6 1.1798 -4.8068 -0.2862 12 6 0.0667 -4.7511 -1.1107 13 16 -0.7499 -6.2407 -1.5789 14 8 0.2109 -7.2805 -1.4566 15 8 -1.4387 -5.9573 -2.7891 16 7 -1.9125 -6.5416 -0.4387 17 6 -3.0452 -5.6249 -0.2878 18 6 -4.1437 -6.3024 0.5339 19 1 -4.4115 -7.2516 0.0698 20 8 -3.6689 -6.5383 1.8610 21 6 -5.3745 -5.3951 0.5864 22 6 -6.4977 -6.1122 1.2901 23 6 -7.3885 -6.8812 0.5647 24 6 -8.4159 -7.5430 1.2108 25 6 -8.5587 -7.4273 2.5809 26 6 -7.6710 -6.6542 3.3055 27 6 -6.6409 -5.9962 2.6600 28 6 -0.4054 -3.5329 -1.5742 29 6 0.2211 -2.3627 -1.2103 30 1 -0.4850 0.8401 -0.0004 31 1 2.6935 -3.6956 0.7269 32 1 1.5418 -5.7617 0.0651 33 1 -1.8455 -7.3270 0.1267 34 1 -2.7150 -4.7203 0.2229 35 1 -3.4356 -5.3647 -1.2717 36 1 -3.4118 -5.7357 2.3351 37 1 -5.1299 -4.4820 1.1292 38 1 -5.6835 -5.1430 -0.4281 39 1 -7.2797 -6.9676 -0.5064 40 1 -9.1097 -8.1467 0.6445 41 1 -9.3641 -7.9407 3.0850 42 1 -7.7829 -6.5635 4.3759 43 1 -5.9476 -5.3918 3.2261 44 1 -1.2706 -3.5016 -2.2199 45 1 -0.1511 -1.4145 -1.5690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095432988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = -100.653613 kcal Electronic energy + Delta-G solvation = -29043.621478 eV Core-core repulsion = 24923.666342 eV Total energy + Delta-G solvation = -4119.955136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.65769 -37.87127 -37.60052 -36.48483 -35.13886 -34.20163 -34.05666 -33.00392 -31.03977 -30.29000 -29.49835 -29.25102 -25.85092 -25.61403 -22.74349 -22.25917 -21.53561 -21.20321 -21.15910 -18.84029 -17.65014 -17.36449 -17.11328 -16.71995 -16.26173 -16.19203 -15.54213 -15.32821 -15.18558 -14.84960 -14.39010 -14.16706 -13.98680 -13.57408 -13.43238 -13.25430 -13.17616 -12.90210 -12.66980 -12.42754 -12.21958 -12.00039 -11.82096 -11.54981 -11.48495 -11.40341 -11.34137 -11.29680 -11.23494 -11.12772 -11.06355 -10.93344 -10.42556 -10.17287 -9.80199 -9.68024 -9.54578 -9.07943 -9.06622 -8.79769 -7.99615 -7.73722 -7.18526 -4.83671 1.16217 1.25400 1.28327 2.21864 2.85339 2.88089 2.90164 2.90670 3.57929 3.63442 3.73824 4.18551 4.28547 4.47193 4.52844 4.67110 4.79546 4.87257 4.94569 4.99039 5.05884 5.19647 5.30679 5.34760 5.36121 5.50782 5.60178 5.62639 5.86617 5.88186 6.00440 6.04588 6.07731 6.15582 6.30266 6.35118 6.47651 6.64675 6.67831 6.85039 6.88322 7.01736 7.29419 7.33556 7.39870 7.56529 7.60253 7.73940 7.93670 8.28414 8.48025 8.61556 9.72913 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002504 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.780299 B =11177.434557 C =13040.255025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.003 3.997 12 C -0.787 4.787 13 S 2.694 3.306 14 O -0.986 6.986 15 O -0.986 6.986 16 N -1.121 6.121 17 C 0.089 3.911 18 C 0.110 3.890 19 H 0.105 0.895 20 O -0.554 6.554 21 C -0.117 4.117 22 C -0.072 4.072 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.104 4.104 28 C -0.018 4.018 29 C -0.183 4.183 30 H 0.289 0.711 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.376 0.624 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.928 -6.146 4.809 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.135 3.865 10 C -0.260 4.260 11 C -0.017 4.017 12 C -0.883 4.883 13 S 2.793 3.207 14 O -0.977 6.977 15 O -0.976 6.976 16 N -0.878 5.878 17 C -0.038 4.038 18 C 0.049 3.951 19 H 0.123 0.877 20 O -0.359 6.359 21 C -0.156 4.156 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.038 4.038 29 C -0.203 4.203 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.224 0.776 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.120 0.880 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.147 -7.008 3.796 16.238 hybrid contribution 0.533 1.692 0.898 1.988 sum -13.614 -5.316 4.694 15.351 Atomic orbital electron populations 1.69811 1.07903 1.30336 1.30826 1.26131 0.94911 1.02124 0.91785 0.86141 0.80527 0.79455 0.79823 1.18772 1.19864 1.18188 1.19955 0.98509 0.91156 1.36584 0.89427 1.17857 0.90064 0.92140 0.86416 1.21055 1.04435 0.92710 1.07769 1.20170 0.92128 0.97293 0.92115 1.29158 1.16564 1.15877 1.26711 1.01192 0.72343 0.74261 0.72912 1.93492 1.60539 1.56901 1.86723 1.93477 1.74499 1.86319 1.43323 1.55615 1.38345 1.36181 1.57686 1.21909 0.87256 0.92923 1.01721 1.22089 0.90451 0.99180 0.83394 0.87706 1.86588 1.86033 1.36885 1.26417 1.21355 0.93742 0.98549 1.01920 1.19723 0.95859 0.97706 0.93903 1.21084 0.95216 0.97547 0.99899 1.21112 0.98338 0.99732 0.94738 1.21123 0.99552 0.99528 0.94375 1.21141 0.95382 0.97559 0.99797 1.21030 0.97630 0.99585 0.93916 1.20258 0.96862 0.91700 0.94993 1.21338 1.00072 0.96851 1.02042 0.90011 0.88205 0.87776 0.75280 0.90885 0.89697 0.77619 0.89870 0.89386 0.86079 0.86277 0.86419 0.86264 0.86099 0.87951 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.58 10.95 55.55 0.61 -16.97 16 2 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 3 Si 0.92 16.69 29.60 -169.99 -5.03 11.65 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.43 -10.45 9.05 -37.74 -0.34 -10.79 16 8 H 0.09 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.14 3.45 5.57 -106.83 -0.60 2.85 16 10 C -0.24 -5.57 9.80 -38.88 -0.38 -5.95 16 11 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 12 C -0.79 -16.87 5.97 -39.29 -0.23 -17.11 16 13 S 2.69 50.79 5.74 -107.50 -0.62 50.17 16 14 O -0.99 -20.79 17.26 -57.17 -0.99 -21.78 16 15 O -0.99 -20.54 16.71 -57.17 -0.96 -21.50 16 16 N -1.12 -16.34 5.96 -10.61 -0.06 -16.40 16 17 C 0.09 1.12 5.87 -4.04 -0.02 1.09 16 18 C 0.11 1.14 3.05 -26.73 -0.08 1.05 16 19 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 20 O -0.55 -6.01 12.64 -35.23 -0.45 -6.46 16 21 C -0.12 -1.06 5.03 -27.88 -0.14 -1.20 16 22 C -0.07 -0.71 4.97 -104.62 -0.52 -1.23 16 23 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 27 C -0.10 -1.00 9.40 -39.59 -0.37 -1.37 16 28 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 29 C -0.18 -4.43 8.70 -38.87 -0.34 -4.77 16 30 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 31 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 33 H 0.41 5.44 8.51 -34.47 -0.29 5.15 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.06 7.74 -51.93 -0.40 0.65 16 36 H 0.38 3.16 9.04 45.56 0.41 3.57 16 37 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.09 0.72 8.08 -51.92 -0.42 0.30 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.10 2.10 7.59 -52.48 -0.40 1.70 16 45 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -30.77 395.19 -12.16 -42.92 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.17 Total: 15.38 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: -5.45 Total: -42.98 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.55 Total: -33.37 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.39 Total: -49.73 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.62 Total: 50.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.77 -12.16 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.729 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds