Wall clock time and date at job start Tue Mar 31 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00120 * 2 1 4 4 H 1.48494 * 109.46902 * 270.00224 * 3 2 1 5 5 H 1.48499 * 109.46728 * 30.00249 * 3 2 1 6 6 H 1.48496 * 109.47127 * 149.99707 * 3 2 1 7 7 C 1.39946 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 197.84566 * 7 2 1 9 9 C 1.41392 * 120.00361 * 17.85212 * 7 2 1 10 10 C 1.40707 * 120.24753 * 204.38229 * 9 7 2 11 11 C 1.37620 * 119.74731 * 180.02562 * 10 9 7 12 12 C 1.38628 * 120.24679 * 0.02562 * 11 10 9 13 13 S 1.76209 * 119.74695 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40047 * 336.45747 * 13 12 11 15 15 O 1.42102 * 106.39921 * 203.53527 * 13 12 11 16 16 N 1.65600 * 107.21730 * 89.99864 * 13 12 11 17 17 C 1.46499 * 120.00162 * 65.27203 * 16 13 12 18 18 C 1.52999 * 109.47368 * 164.72498 * 17 16 13 19 19 H 1.09001 * 109.46978 * 305.00139 * 18 17 16 20 20 O 1.42902 * 109.46945 * 64.99991 * 18 17 16 21 21 C 1.52997 * 109.47443 * 185.00148 * 18 17 16 22 22 C 1.50703 * 109.47315 * 174.99970 * 21 18 17 23 23 C 1.38241 * 119.99966 * 269.72826 * 22 21 18 24 24 C 1.38232 * 119.99866 * 179.76244 * 23 22 21 25 25 C 1.38237 * 119.99752 * 0.51038 * 24 23 22 26 26 C 1.38234 * 120.00262 * 359.74468 * 25 24 23 27 27 C 1.38230 * 119.99795 * 0.02562 * 26 25 24 28 28 C 1.38628 * 120.50340 * 0.24768 * 12 11 10 29 29 C 1.37626 * 120.24793 * 359.44927 * 28 12 11 30 30 H 0.97001 * 119.99824 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.12835 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.87372 * 179.97438 * 11 10 9 33 33 H 0.97003 * 120.00221 * 245.00507 * 16 13 12 34 34 H 1.09000 * 109.47304 * 284.72557 * 17 16 13 35 35 H 1.09001 * 109.47275 * 44.72445 * 17 16 13 36 36 H 0.96697 * 113.99711 * 60.00796 * 20 18 17 37 37 H 1.08998 * 109.47148 * 294.99899 * 21 18 17 38 38 H 1.09009 * 109.47205 * 55.00217 * 21 18 17 39 39 H 1.08001 * 119.99617 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.99658 * 180.22617 * 24 23 22 41 41 H 1.07999 * 119.99599 * 179.71898 * 25 24 23 42 42 H 1.08000 * 120.00040 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.99913 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.87846 * 179.70710 * 28 12 11 45 45 H 1.07993 * 120.12580 * 180.27342 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8257 -3.6498 0.0854 11 6 1.1798 -4.8068 -0.2862 12 6 0.0667 -4.7511 -1.1107 13 16 -0.7499 -6.2407 -1.5789 14 8 0.2109 -7.2805 -1.4566 15 8 -1.4387 -5.9573 -2.7891 16 7 -1.9125 -6.5416 -0.4387 17 6 -3.0452 -5.6249 -0.2878 18 6 -4.1437 -6.3024 0.5339 19 1 -4.4115 -7.2516 0.0698 20 8 -3.6689 -6.5383 1.8610 21 6 -5.3745 -5.3951 0.5864 22 6 -6.4977 -6.1122 1.2901 23 6 -7.3885 -6.8812 0.5647 24 6 -8.4159 -7.5430 1.2108 25 6 -8.5587 -7.4273 2.5809 26 6 -7.6710 -6.6542 3.3055 27 6 -6.6409 -5.9962 2.6600 28 6 -0.4054 -3.5329 -1.5742 29 6 0.2211 -2.3627 -1.2103 30 1 -0.4850 0.8401 -0.0004 31 1 2.6935 -3.6956 0.7269 32 1 1.5418 -5.7617 0.0651 33 1 -1.8455 -7.3270 0.1267 34 1 -2.7150 -4.7203 0.2229 35 1 -3.4356 -5.3647 -1.2717 36 1 -3.4118 -5.7357 2.3351 37 1 -5.1299 -4.4820 1.1292 38 1 -5.6835 -5.1430 -0.4281 39 1 -7.2797 -6.9676 -0.5064 40 1 -9.1097 -8.1467 0.6445 41 1 -9.3641 -7.9407 3.0850 42 1 -7.7829 -6.5635 4.3759 43 1 -5.9476 -5.3918 3.2261 44 1 -1.2706 -3.5016 -2.2199 45 1 -0.1511 -1.4145 -1.5690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095432988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:07 Heat of formation + Delta-G solvation = -120.708917 kcal Electronic energy + Delta-G solvation = -29044.491141 eV Core-core repulsion = 24923.666342 eV Total energy + Delta-G solvation = -4120.824800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.36068 -39.37590 -38.72130 -38.10032 -36.77757 -35.80016 -35.30645 -33.73263 -32.05687 -31.69577 -31.28065 -30.10823 -27.61037 -26.51077 -23.43624 -23.33799 -23.06750 -22.90689 -21.93685 -20.30758 -19.41406 -18.63094 -18.41047 -17.89135 -17.27073 -17.24595 -17.03659 -16.47603 -15.90729 -15.84109 -15.71175 -15.54855 -15.19120 -14.93646 -14.93162 -14.22918 -14.12090 -14.02957 -13.95118 -13.75994 -13.57411 -13.41419 -13.11921 -13.03578 -12.95530 -12.89946 -12.87853 -12.65218 -12.59017 -12.08751 -11.98067 -11.83478 -11.77115 -11.54225 -11.34467 -11.22849 -11.03968 -10.37683 -9.78412 -9.74514 -9.54216 -9.49969 -8.87079 -6.64135 -0.28972 0.48969 0.51365 0.57861 1.06613 1.36440 1.43845 1.50567 2.11828 2.25789 2.53363 2.93540 2.95524 3.46996 3.53846 3.55698 3.74869 3.98049 4.10302 4.12222 4.23617 4.25355 4.32148 4.33814 4.36180 4.48567 4.60313 4.71011 4.80724 4.86922 4.91514 4.93514 4.98648 5.12000 5.13417 5.24960 5.25109 5.26948 5.53199 5.60416 5.63970 5.69033 5.77298 5.78699 5.93919 6.15830 6.19226 6.20202 6.49815 6.69167 6.81647 6.83481 8.07851 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002504 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.780299 B =11177.434557 C =13040.255025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.037 3.963 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.002 4.002 12 C -0.795 4.795 13 S 2.727 3.273 14 O -1.005 7.005 15 O -1.002 7.002 16 N -1.106 6.106 17 C 0.082 3.918 18 C 0.122 3.878 19 H 0.105 0.895 20 O -0.565 6.565 21 C -0.112 4.112 22 C -0.085 4.085 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.018 4.018 29 C -0.206 4.206 30 H 0.299 0.701 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.423 0.577 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.386 0.614 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.935 -6.270 5.250 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.492 4.492 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.278 4.278 11 C -0.022 4.022 12 C -0.888 4.888 13 S 2.822 3.178 14 O -0.996 6.996 15 O -0.992 6.992 16 N -0.867 5.867 17 C -0.045 4.045 18 C 0.061 3.939 19 H 0.123 0.877 20 O -0.372 6.372 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.136 4.136 28 C -0.038 4.038 29 C -0.226 4.226 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.260 0.740 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.236 0.764 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.136 0.864 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.139 -7.119 4.252 17.261 hybrid contribution 0.729 1.609 0.787 1.934 sum -14.410 -5.510 5.040 16.229 Atomic orbital electron populations 1.69827 1.09142 1.31806 1.30666 1.26940 0.95631 1.04937 0.90818 0.85086 0.79185 0.75125 0.79790 1.18591 1.18670 1.17928 1.20209 0.98862 0.92136 1.38040 0.89309 1.18199 0.90766 0.93162 0.87139 1.21266 1.05184 0.92894 1.08477 1.20439 0.92101 0.97706 0.91945 1.29619 1.16676 1.16921 1.25591 1.00237 0.72040 0.72732 0.72763 1.93461 1.61944 1.57047 1.87131 1.93456 1.74699 1.86329 1.44742 1.55194 1.37669 1.36740 1.57112 1.22155 0.87096 0.92706 1.02516 1.21962 0.89990 0.99160 0.82818 0.87746 1.86565 1.86119 1.37898 1.26573 1.21308 0.92863 0.98337 1.02546 1.19849 0.96292 0.98188 0.94153 1.21333 0.95460 0.97675 1.00633 1.21414 0.98516 0.99765 0.95136 1.21438 0.99954 0.99389 0.94579 1.21425 0.95324 0.97500 1.00779 1.21243 0.98182 1.00045 0.94163 1.20456 0.97021 0.91584 0.94774 1.21357 1.00916 0.97194 1.03161 0.89010 0.87312 0.85945 0.74034 0.91013 0.89306 0.76450 0.89270 0.88532 0.85056 0.84533 0.84537 0.84798 0.85453 0.86424 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.66 10.95 21.83 0.24 -36.42 16 2 C 0.04 1.65 5.14 85.26 0.44 2.09 16 3 Si 0.99 33.84 29.60 68.60 2.03 35.87 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 6 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 7 C -0.47 -22.88 9.05 23.46 0.21 -22.67 16 8 H 0.09 4.16 7.91 -2.91 -0.02 4.14 16 9 C 0.11 5.64 5.57 -21.29 -0.12 5.52 16 10 C -0.26 -12.20 9.80 22.73 0.22 -11.97 16 11 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 12 C -0.80 -33.74 5.97 22.46 0.13 -33.61 16 13 S 2.73 99.39 5.74 -56.49 -0.32 99.06 16 14 O -1.01 -41.02 17.26 -128.00 -2.21 -43.23 16 15 O -1.00 -40.41 16.71 -128.00 -2.14 -42.54 16 16 N -1.11 -30.43 5.96 -187.49 -1.12 -31.55 16 17 C 0.08 1.93 5.87 86.38 0.51 2.43 16 18 C 0.12 2.32 3.05 30.59 0.09 2.42 16 19 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 20 O -0.56 -11.38 12.64 -148.98 -1.88 -13.26 16 21 C -0.11 -1.86 5.03 29.85 0.15 -1.71 16 22 C -0.08 -1.56 4.97 -19.86 -0.10 -1.66 16 23 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.14 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 27 C -0.12 -2.16 9.40 22.27 0.21 -1.95 16 28 C -0.02 -0.82 9.49 22.22 0.21 -0.61 16 29 C -0.21 -10.24 8.70 22.73 0.20 -10.04 16 30 H 0.30 12.24 8.30 -92.71 -0.77 11.47 16 31 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 32 H 0.12 4.82 7.60 -2.91 -0.02 4.79 16 33 H 0.42 10.32 8.51 -96.74 -0.82 9.50 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 2.06 7.74 -2.39 -0.02 2.04 16 36 H 0.39 5.94 9.04 -74.06 -0.67 5.27 16 37 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 38 H 0.10 1.42 8.08 -2.38 -0.02 1.40 16 39 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 44 H 0.12 4.79 7.59 -2.91 -0.02 4.77 16 45 H 0.11 5.68 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -65.18 395.19 -2.61 -67.79 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.46 Total: 43.89 kcal Atomic # 6 Polarization: -82.87 SS G_CDS: 3.26 Total: -79.61 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.88 Total: -67.97 kcal Atomic # 8 Polarization: -92.80 SS G_CDS: -6.23 Total: -99.03 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Atomic # 16 Polarization: 99.39 SS G_CDS: -0.32 Total: 99.06 kcal Total: -65.18 -2.61 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.923 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds