Wall clock time and date at job start Tue Mar 31 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48498 * 109.46933 * 274.66243 * 3 2 1 5 5 H 1.48495 * 109.47545 * 34.66301 * 3 2 1 6 6 H 1.48497 * 109.46913 * 154.66561 * 3 2 1 7 7 C 1.39937 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00332 * 162.22741 * 7 2 1 9 9 C 1.41395 * 120.00131 * 342.23187 * 7 2 1 10 10 C 1.40718 * 120.24864 * 155.28903 * 9 7 2 11 11 C 1.37615 * 119.74792 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24775 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74541 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40424 * 336.45718 * 13 12 11 15 15 O 1.42106 * 106.39747 * 203.53817 * 13 12 11 16 16 N 1.65596 * 107.21999 * 90.00010 * 13 12 11 17 17 C 1.46508 * 119.99916 * 64.99398 * 16 13 12 18 18 C 1.53002 * 109.46996 * 165.00276 * 17 16 13 19 19 H 1.09002 * 109.47392 * 59.99790 * 18 17 16 20 20 O 1.42902 * 109.47334 * 300.00393 * 18 17 16 21 21 C 1.52998 * 109.47129 * 180.02562 * 18 17 16 22 22 C 1.50700 * 109.47199 * 185.00166 * 21 18 17 23 23 C 1.38233 * 120.00520 * 89.99723 * 22 21 18 24 24 C 1.38236 * 120.00269 * 180.02562 * 23 22 21 25 25 C 1.38229 * 119.99969 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.00139 * 0.25071 * 25 24 23 27 27 C 1.38236 * 119.99927 * 359.49781 * 26 25 24 28 28 C 1.38632 * 120.50041 * 0.24992 * 12 11 10 29 29 C 1.37616 * 120.24750 * 359.45406 * 28 12 11 30 30 H 0.96994 * 120.00135 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.11894 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.87265 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00497 * 245.00346 * 16 13 12 34 34 H 1.09001 * 109.47060 * 45.00907 * 17 16 13 35 35 H 1.08993 * 109.47431 * 285.00056 * 17 16 13 36 36 H 0.96707 * 113.99737 * 300.00150 * 20 18 17 37 37 H 1.08998 * 109.46978 * 64.99956 * 21 18 17 38 38 H 1.08999 * 109.47150 * 304.99790 * 21 18 17 39 39 H 1.08004 * 119.99799 * 0.02562 * 23 22 21 40 40 H 1.08007 * 119.99772 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.00155 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00135 * 179.72670 * 26 25 24 43 43 H 1.07999 * 120.00135 * 180.22886 * 27 26 25 44 44 H 1.08000 * 119.87462 * 179.70181 * 28 12 11 45 45 H 1.08007 * 120.12229 * 180.27230 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4925 2.6223 0.7962 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3517 -2.4071 0.3748 10 6 1.8219 -3.6493 -0.0898 11 6 1.1749 -4.8061 0.2804 12 6 0.0636 -4.7507 1.1074 13 16 -0.7551 -6.2400 1.5726 14 8 -0.4424 -7.1993 0.5720 15 8 -2.0864 -5.8768 1.9120 16 7 -0.0452 -6.7737 2.9702 17 6 -0.1554 -5.9803 4.1970 18 6 0.2432 -6.8404 5.3980 19 1 1.2717 -7.1803 5.2762 20 8 -0.6253 -7.9720 5.4828 21 6 0.1276 -6.0122 6.6792 22 6 0.6362 -6.8185 7.8463 23 6 1.9708 -6.7553 8.2010 24 6 2.4374 -7.4954 9.2712 25 6 1.5696 -8.2992 9.9864 26 6 0.2362 -8.3669 9.6283 27 6 -0.2315 -7.6228 8.5613 28 6 -0.4118 -3.5320 1.5664 29 6 0.2230 -2.3630 1.2139 30 1 -0.4850 0.8400 0.0004 31 1 2.6868 -3.6946 -0.7351 32 1 1.5338 -5.7606 -0.0753 33 1 0.4437 -7.6114 2.9767 34 1 -1.1839 -5.6406 4.3189 35 1 0.5072 -5.1173 4.1324 36 1 -1.5587 -7.7440 5.5923 37 1 -0.9163 -5.7476 6.8478 38 1 0.7212 -5.1035 6.5792 39 1 2.6490 -6.1276 7.6419 40 1 3.4803 -7.4462 9.5480 41 1 1.9342 -8.8777 10.8223 42 1 -0.4409 -8.9983 10.1843 43 1 -1.2741 -7.6729 8.2837 44 1 -1.2813 -3.5002 2.2062 45 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095432989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:12 Heat of formation + Delta-G solvation = -99.861110 kcal Electronic energy + Delta-G solvation = -28948.223607 eV Core-core repulsion = 24828.302837 eV Total energy + Delta-G solvation = -4119.920771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.68825 -37.90592 -37.59637 -36.47299 -35.12593 -34.22648 -34.04724 -33.03773 -31.06494 -30.28470 -29.49683 -29.28824 -25.84529 -25.64734 -22.77194 -22.29598 -21.53494 -21.24184 -21.15500 -18.85027 -17.64544 -17.39475 -17.14501 -16.69618 -16.38295 -16.04709 -15.54639 -15.32934 -15.20273 -14.97554 -14.38174 -14.17031 -14.05447 -13.59337 -13.41740 -13.28032 -13.17396 -12.95882 -12.64899 -12.45371 -12.22187 -12.04108 -11.76490 -11.56385 -11.46428 -11.42793 -11.36769 -11.31058 -11.23422 -11.15494 -11.07419 -10.89377 -10.47274 -10.23765 -9.79349 -9.68687 -9.51682 -9.09533 -9.07711 -8.82395 -7.98657 -7.73541 -7.16789 -4.82808 1.13958 1.22875 1.27177 2.22952 2.84983 2.86833 2.89430 2.93424 3.55596 3.63659 3.73253 4.19286 4.25450 4.40722 4.55472 4.64056 4.77024 4.84246 4.91951 4.95322 5.01037 5.17290 5.28790 5.32453 5.35658 5.46747 5.54707 5.65718 5.82736 5.85019 5.93159 6.04171 6.07763 6.14128 6.27840 6.32667 6.44443 6.65243 6.68590 6.82416 6.88361 7.02263 7.27825 7.32338 7.40122 7.52576 7.60421 7.74056 7.94313 8.28891 8.48518 8.62100 9.74787 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010437 B = 0.002425 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.008789 B =11542.552818 C =13362.868316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.435 4.435 8 H 0.087 0.913 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.003 3.997 12 C -0.789 4.789 13 S 2.696 3.304 14 O -0.985 6.985 15 O -0.985 6.985 16 N -1.120 6.120 17 C 0.089 3.911 18 C 0.109 3.891 19 H 0.106 0.894 20 O -0.552 6.552 21 C -0.117 4.117 22 C -0.072 4.072 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.104 4.104 28 C -0.017 4.017 29 C -0.184 4.184 30 H 0.289 0.711 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.374 0.626 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.103 0.897 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 -8.070 16.526 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.462 4.462 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.017 4.017 12 C -0.885 4.885 13 S 2.794 3.206 14 O -0.976 6.976 15 O -0.976 6.976 16 N -0.877 5.877 17 C -0.038 4.038 18 C 0.048 3.952 19 H 0.123 0.877 20 O -0.357 6.357 21 C -0.155 4.155 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.037 4.037 29 C -0.204 4.204 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.221 0.779 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.121 0.879 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.374 -8.518 16.022 18.197 hybrid contribution 0.577 1.393 0.041 1.508 sum 1.951 -7.125 16.063 17.680 Atomic orbital electron populations 1.69827 1.07922 1.30413 1.30525 1.26147 0.94887 1.02151 0.91859 0.86149 0.80750 0.79626 0.79543 1.19086 1.19573 1.18005 1.19933 0.98490 0.91207 1.36610 0.89453 1.17856 0.90071 0.92135 0.86379 1.21030 1.04368 0.92819 1.07765 1.20166 0.91814 0.97426 0.92332 1.29161 1.18445 1.15484 1.25423 1.01152 0.73610 0.74058 0.71754 1.93492 1.85465 1.61788 1.56868 1.93476 1.35339 1.84858 1.83884 1.55593 1.73771 1.33850 1.24442 1.21903 1.02732 0.94479 0.84702 1.22104 0.95486 0.86390 0.91172 0.87653 1.86602 1.20911 1.32376 1.95851 1.21349 1.02909 0.98470 0.92802 1.19716 0.93723 0.97575 0.96236 1.21097 0.95156 0.99889 0.97518 1.21125 0.99618 0.97116 0.96004 1.21125 0.93862 0.99472 1.00089 1.21133 0.95789 0.99447 0.97544 1.21015 0.99627 0.96304 0.95293 1.20249 0.95844 0.91803 0.95836 1.21337 0.99802 0.96901 1.02343 0.89931 0.88196 0.87804 0.75419 0.90224 0.90471 0.77854 0.90035 0.89268 0.86002 0.86230 0.86406 0.86293 0.86181 0.87940 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.10 10.97 55.55 0.61 -17.49 16 2 C 0.07 1.63 5.14 -17.34 -0.09 1.55 16 3 Si 0.92 16.71 29.60 -169.99 -5.03 11.68 16 4 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.44 -10.50 9.05 -37.75 -0.34 -10.84 16 8 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.47 5.57 -106.82 -0.60 2.87 16 10 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 12 C -0.79 -16.97 5.97 -39.29 -0.23 -17.21 16 13 S 2.70 50.82 5.73 -107.50 -0.62 50.20 16 14 O -0.99 -20.94 17.26 -57.17 -0.99 -21.93 16 15 O -0.99 -20.62 16.72 -57.17 -0.96 -21.57 16 16 N -1.12 -15.86 5.86 -10.61 -0.06 -15.93 16 17 C 0.09 1.06 5.89 -4.04 -0.02 1.04 16 18 C 0.11 1.07 3.04 -26.73 -0.08 0.99 16 19 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 20 O -0.55 -5.74 12.69 -35.23 -0.45 -6.18 16 21 C -0.12 -0.98 5.03 -27.88 -0.14 -1.12 16 22 C -0.07 -0.68 4.97 -104.62 -0.52 -1.20 16 23 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 24 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 25 C -0.13 -1.08 10.05 -39.59 -0.40 -1.48 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 27 C -0.10 -0.95 9.40 -39.58 -0.37 -1.32 16 28 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 29 C -0.18 -4.47 8.70 -38.87 -0.34 -4.81 16 30 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 31 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 32 H 0.10 2.08 7.60 -52.49 -0.40 1.69 16 33 H 0.41 5.22 8.65 -34.47 -0.30 4.92 16 34 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.37 2.87 9.05 45.56 0.41 3.28 16 37 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.10 2.10 7.59 -52.49 -0.40 1.71 16 45 H 0.12 2.99 6.18 -52.48 -0.32 2.67 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -31.52 395.35 -12.16 -43.69 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -5.18 Total: 14.52 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: -5.45 Total: -42.95 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.55 Total: -33.41 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.39 Total: -49.69 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.68 kcal Atomic # 16 Polarization: 50.82 SS G_CDS: -0.62 Total: 50.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.52 -12.16 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.176 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds