Wall clock time and date at job start Tue Mar 31 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48498 * 109.46933 * 274.66243 * 3 2 1 5 5 H 1.48495 * 109.47545 * 34.66301 * 3 2 1 6 6 H 1.48497 * 109.46913 * 154.66561 * 3 2 1 7 7 C 1.39937 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00332 * 162.22741 * 7 2 1 9 9 C 1.41395 * 120.00131 * 342.23187 * 7 2 1 10 10 C 1.40718 * 120.24864 * 155.28903 * 9 7 2 11 11 C 1.37615 * 119.74792 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24775 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74541 * 179.97438 * 12 11 10 14 14 O 1.42098 * 106.40424 * 336.45718 * 13 12 11 15 15 O 1.42106 * 106.39747 * 203.53817 * 13 12 11 16 16 N 1.65596 * 107.21999 * 90.00010 * 13 12 11 17 17 C 1.46508 * 119.99916 * 64.99398 * 16 13 12 18 18 C 1.53002 * 109.46996 * 165.00276 * 17 16 13 19 19 H 1.09002 * 109.47392 * 59.99790 * 18 17 16 20 20 O 1.42902 * 109.47334 * 300.00393 * 18 17 16 21 21 C 1.52998 * 109.47129 * 180.02562 * 18 17 16 22 22 C 1.50700 * 109.47199 * 185.00166 * 21 18 17 23 23 C 1.38233 * 120.00520 * 89.99723 * 22 21 18 24 24 C 1.38236 * 120.00269 * 180.02562 * 23 22 21 25 25 C 1.38229 * 119.99969 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.00139 * 0.25071 * 25 24 23 27 27 C 1.38236 * 119.99927 * 359.49781 * 26 25 24 28 28 C 1.38632 * 120.50041 * 0.24992 * 12 11 10 29 29 C 1.37616 * 120.24750 * 359.45406 * 28 12 11 30 30 H 0.96994 * 120.00135 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.11894 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.87265 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00497 * 245.00346 * 16 13 12 34 34 H 1.09001 * 109.47060 * 45.00907 * 17 16 13 35 35 H 1.08993 * 109.47431 * 285.00056 * 17 16 13 36 36 H 0.96707 * 113.99737 * 300.00150 * 20 18 17 37 37 H 1.08998 * 109.46978 * 64.99956 * 21 18 17 38 38 H 1.08999 * 109.47150 * 304.99790 * 21 18 17 39 39 H 1.08004 * 119.99799 * 0.02562 * 23 22 21 40 40 H 1.08007 * 119.99772 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.00155 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00135 * 179.72670 * 26 25 24 43 43 H 1.07999 * 120.00135 * 180.22886 * 27 26 25 44 44 H 1.08000 * 119.87462 * 179.70181 * 28 12 11 45 45 H 1.08007 * 120.12229 * 180.27230 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1034 -1.3954 5 1 1.4925 2.6223 0.7962 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3517 -2.4071 0.3748 10 6 1.8219 -3.6493 -0.0898 11 6 1.1749 -4.8061 0.2804 12 6 0.0636 -4.7507 1.1074 13 16 -0.7551 -6.2400 1.5726 14 8 -0.4424 -7.1993 0.5720 15 8 -2.0864 -5.8768 1.9120 16 7 -0.0452 -6.7737 2.9702 17 6 -0.1554 -5.9803 4.1970 18 6 0.2432 -6.8404 5.3980 19 1 1.2717 -7.1803 5.2762 20 8 -0.6253 -7.9720 5.4828 21 6 0.1276 -6.0122 6.6792 22 6 0.6362 -6.8185 7.8463 23 6 1.9708 -6.7553 8.2010 24 6 2.4374 -7.4954 9.2712 25 6 1.5696 -8.2992 9.9864 26 6 0.2362 -8.3669 9.6283 27 6 -0.2315 -7.6228 8.5613 28 6 -0.4118 -3.5320 1.5664 29 6 0.2230 -2.3630 1.2139 30 1 -0.4850 0.8400 0.0004 31 1 2.6868 -3.6946 -0.7351 32 1 1.5338 -5.7606 -0.0753 33 1 0.4437 -7.6114 2.9767 34 1 -1.1839 -5.6406 4.3189 35 1 0.5072 -5.1173 4.1324 36 1 -1.5587 -7.7440 5.5923 37 1 -0.9163 -5.7476 6.8478 38 1 0.7212 -5.1035 6.5792 39 1 2.6490 -6.1276 7.6419 40 1 3.4803 -7.4462 9.5480 41 1 1.9342 -8.8777 10.8223 42 1 -0.4409 -8.9983 10.1843 43 1 -1.2741 -7.6729 8.2837 44 1 -1.2813 -3.5002 2.2062 45 1 -0.1465 -1.4150 1.5762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095432989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:11 Heat of formation + Delta-G solvation = -120.736018 kcal Electronic energy + Delta-G solvation = -28949.128811 eV Core-core repulsion = 24828.302837 eV Total energy + Delta-G solvation = -4120.825975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.35317 -39.37727 -38.71601 -38.08924 -36.76851 -35.80712 -35.28916 -33.72439 -32.06314 -31.68914 -31.28633 -30.10567 -27.61574 -26.50084 -23.43299 -23.33844 -23.07320 -22.90373 -21.93576 -20.30304 -19.41906 -18.63231 -18.40784 -17.87650 -17.32601 -17.20858 -16.86783 -16.55830 -15.90264 -15.84004 -15.68813 -15.60892 -15.17900 -14.95841 -14.93031 -14.20918 -14.12657 -13.99668 -13.94711 -13.82296 -13.51406 -13.39435 -13.10277 -13.01626 -12.96308 -12.94382 -12.86002 -12.64696 -12.55786 -12.07915 -12.02103 -11.80896 -11.76191 -11.54023 -11.35895 -11.20286 -11.07136 -10.33364 -9.78499 -9.73889 -9.54584 -9.49217 -8.87205 -6.64710 -0.29233 0.48986 0.51962 0.58424 1.06074 1.36111 1.41999 1.53017 2.11429 2.26657 2.54619 2.94092 2.95427 3.46018 3.53376 3.62757 3.71948 3.99110 4.09290 4.15804 4.22235 4.25757 4.32474 4.33992 4.36353 4.50340 4.65015 4.71787 4.80738 4.86866 4.91776 4.94553 4.98945 5.11516 5.13525 5.24711 5.25911 5.27533 5.53043 5.60114 5.64631 5.69672 5.76918 5.79141 5.93533 6.15713 6.19640 6.20770 6.49492 6.68761 6.81460 6.86528 8.08110 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010437 B = 0.002425 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.008789 B =11542.552818 C =13362.868316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.111 3.889 10 C -0.258 4.258 11 C -0.003 4.003 12 C -0.797 4.797 13 S 2.728 3.272 14 O -1.007 7.007 15 O -1.003 7.003 16 N -1.104 6.104 17 C 0.081 3.919 18 C 0.121 3.879 19 H 0.104 0.896 20 O -0.564 6.564 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.117 4.117 28 C -0.018 4.018 29 C -0.207 4.207 30 H 0.298 0.702 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.423 0.577 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.386 0.614 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.118 0.882 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -8.348 17.808 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.109 0.891 9 C 0.107 3.893 10 C -0.278 4.278 11 C -0.023 4.023 12 C -0.890 4.890 13 S 2.824 3.176 14 O -0.997 6.997 15 O -0.993 6.993 16 N -0.865 5.865 17 C -0.046 4.046 18 C 0.061 3.939 19 H 0.121 0.879 20 O -0.371 6.371 21 C -0.150 4.150 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.150 4.150 27 C -0.135 4.135 28 C -0.038 4.038 29 C -0.227 4.227 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.259 0.741 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.235 0.765 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.672 -8.787 17.290 19.466 hybrid contribution 0.431 1.322 -0.278 1.418 sum 2.102 -7.465 17.012 18.696 Atomic orbital electron populations 1.69860 1.09414 1.31876 1.30993 1.27021 0.95546 1.05238 0.90705 0.85046 0.79284 0.74945 0.79702 1.18543 1.18643 1.17657 1.20215 0.98933 0.92109 1.37991 0.89064 1.18212 0.90769 0.93190 0.87095 1.21257 1.05197 0.92973 1.08398 1.20450 0.91854 0.97874 0.92099 1.29653 1.17870 1.16723 1.24736 1.00189 0.72888 0.72615 0.71944 1.93458 1.85677 1.61857 1.58756 1.93453 1.36500 1.85002 1.84320 1.55135 1.73481 1.34187 1.23652 1.22179 1.03295 0.94765 0.84342 1.21965 0.95246 0.86025 0.90708 0.87858 1.86579 1.21964 1.32745 1.95819 1.21304 1.03810 0.98219 0.91673 1.19856 0.93936 0.97990 0.96678 1.21328 0.95495 1.00372 0.98033 1.21404 1.00593 0.97038 0.95941 1.21432 0.93933 0.99488 1.00568 1.21433 0.96315 0.99594 0.97634 1.21258 1.00293 0.96383 0.95539 1.20456 0.96000 0.91669 0.95658 1.21366 1.00680 0.97236 1.03404 0.89036 0.87242 0.85892 0.74092 0.89713 0.90304 0.76493 0.88836 0.88748 0.85312 0.84772 0.84628 0.84682 0.85087 0.86365 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.42 10.97 21.83 0.24 -38.18 16 2 C 0.03 1.57 5.14 85.25 0.44 2.00 16 3 Si 0.99 33.98 29.60 68.60 2.03 36.01 16 4 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 5 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 6 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 7 C -0.47 -22.96 9.05 23.46 0.21 -22.75 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 9 C 0.11 5.66 5.57 -21.29 -0.12 5.54 16 10 C -0.26 -12.24 9.80 22.73 0.22 -12.01 16 11 C 0.00 -0.13 9.49 22.22 0.21 0.08 16 12 C -0.80 -33.91 5.97 22.46 0.13 -33.78 16 13 S 2.73 99.30 5.73 -56.49 -0.32 98.98 16 14 O -1.01 -41.43 17.26 -128.00 -2.21 -43.63 16 15 O -1.00 -40.55 16.72 -128.00 -2.14 -42.69 16 16 N -1.10 -29.29 5.86 -187.48 -1.10 -30.39 16 17 C 0.08 1.78 5.89 86.38 0.51 2.28 16 18 C 0.12 2.15 3.04 30.59 0.09 2.24 16 19 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 20 O -0.56 -10.56 12.69 -148.98 -1.89 -12.45 16 21 C -0.11 -1.68 5.03 29.85 0.15 -1.53 16 22 C -0.08 -1.47 4.97 -19.86 -0.10 -1.56 16 23 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 24 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.14 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.12 -1.95 9.40 22.27 0.21 -1.74 16 28 C -0.02 -0.80 9.49 22.22 0.21 -0.59 16 29 C -0.21 -10.32 8.70 22.73 0.20 -10.12 16 30 H 0.30 12.74 8.30 -92.71 -0.77 11.98 16 31 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 32 H 0.12 4.83 7.60 -2.91 -0.02 4.81 16 33 H 0.42 9.83 8.65 -96.75 -0.84 8.99 16 34 H 0.08 1.82 7.75 -2.39 -0.02 1.80 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.39 5.08 9.05 -74.05 -0.67 4.41 16 37 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 38 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 39 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.12 4.82 7.59 -2.91 -0.02 4.79 16 45 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 Total: -1.00 -67.21 395.35 -2.61 -69.83 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.48 Total: 42.21 kcal Atomic # 6 Polarization: -82.94 SS G_CDS: 3.26 Total: -79.68 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.86 Total: -68.57 kcal Atomic # 8 Polarization: -92.54 SS G_CDS: -6.24 Total: -98.78 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.32 Total: 98.98 kcal Total: -67.21 -2.61 -69.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.909 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds