Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99887 * 2 1 4 4 C 1.38212 * 120.00169 * 179.74611 * 3 2 1 5 5 C 1.38258 * 119.99575 * 0.52798 * 4 3 2 6 6 C 1.38211 * 120.00216 * 359.75045 * 5 4 3 7 7 C 1.38210 * 120.00505 * 180.27788 * 2 1 3 8 8 C 1.50702 * 119.99428 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.47347 * 324.99499 * 8 7 2 10 10 O 1.42902 * 109.46620 * 205.00220 * 8 7 2 11 11 C 1.53000 * 109.47491 * 85.00108 * 8 7 2 12 12 N 1.46492 * 109.47175 * 184.99504 * 11 8 7 13 13 S 1.65599 * 119.99968 * 164.99824 * 12 11 8 14 14 O 1.42101 * 106.40415 * 178.54548 * 13 12 11 15 15 O 1.42107 * 106.40299 * 311.46448 * 13 12 11 16 16 C 1.76201 * 107.21703 * 65.00403 * 13 12 11 17 17 C 1.38640 * 119.74918 * 269.72805 * 16 13 12 18 18 C 1.37616 * 120.24828 * 179.72279 * 17 16 13 19 19 C 1.40708 * 119.74481 * 0.56640 * 18 17 16 20 20 C 1.41398 * 120.24538 * 179.68388 * 19 18 17 21 21 H 1.08006 * 119.99831 * 204.40861 * 20 19 18 22 22 C 1.39943 * 120.00114 * 24.41181 * 20 19 18 23 23 N 1.30827 * 119.99735 * 17.84334 * 22 20 19 24 24 Si 1.86799 * 120.00141 * 197.85041 * 22 20 19 25 25 H 1.48496 * 109.47218 * 89.99507 * 24 22 20 26 26 H 1.48500 * 109.46914 * 209.99682 * 24 22 20 27 27 H 1.48507 * 109.46952 * 329.99455 * 24 22 20 28 28 C 1.40721 * 119.51053 * 359.70881 * 19 18 17 29 29 C 1.37607 * 119.74713 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.46970 * 269.72779 * 1 2 3 31 31 H 1.08997 * 109.47230 * 149.72267 * 1 2 3 32 32 H 1.09004 * 109.47238 * 29.72408 * 1 2 3 33 33 H 1.08003 * 119.99728 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00225 * 180.29682 * 4 3 2 35 35 H 1.08000 * 119.99955 * 179.76697 * 5 4 3 36 36 H 1.08004 * 120.00393 * 179.97438 * 6 5 4 37 37 H 0.96700 * 113.99953 * 299.99554 * 10 8 7 38 38 H 1.08996 * 109.46907 * 305.00230 * 11 8 7 39 39 H 1.09006 * 109.46589 * 64.99597 * 11 8 7 40 40 H 0.97007 * 120.00119 * 345.00342 * 12 11 8 41 41 H 1.08004 * 119.86898 * 359.97438 * 17 16 13 42 42 H 1.08002 * 120.12814 * 180.28004 * 18 17 16 43 43 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.12235 * 179.97438 * 28 19 18 45 45 H 1.08004 * 119.87838 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0053 5 6 4.2717 0.0002 -0.0004 6 6 3.5807 -1.1968 -0.0062 7 6 2.1982 -1.1969 -0.0058 8 6 1.4446 -2.5019 -0.0127 9 1 0.5337 -2.3987 0.5770 10 8 2.2638 -3.5278 0.5519 11 6 1.0813 -2.8736 -1.4517 12 7 0.2474 -4.0780 -1.4494 13 16 -0.5987 -4.5019 -2.8083 14 8 -1.2705 -5.7157 -2.5004 15 8 -1.2730 -3.3292 -3.2434 16 6 0.5817 -4.8897 -4.0578 17 6 1.0370 -3.8929 -4.9070 18 6 1.9630 -4.1831 -5.8828 19 6 2.4388 -5.4998 -6.0243 20 6 3.3853 -5.8111 -7.0276 21 1 3.4605 -6.8204 -7.4045 22 6 4.2246 -4.8114 -7.5321 23 7 4.3918 -3.6990 -6.8642 24 14 5.1061 -5.0653 -9.1593 25 1 4.2545 -4.5631 -10.2673 26 1 6.3917 -4.3220 -9.1471 27 1 5.3731 -6.5127 -9.3571 28 6 1.9652 -6.5045 -5.1603 29 6 1.0441 -6.1902 -4.1875 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3634 0.8925 -0.5096 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1328 0.0101 35 1 5.3517 0.0002 -0.0001 36 1 4.1207 -2.1321 -0.0111 37 1 3.0932 -3.6747 0.0770 38 1 0.5319 -2.0520 -1.9114 39 1 1.9925 -3.0636 -2.0190 40 1 0.1908 -4.6271 -0.6517 41 1 0.6665 -2.8841 -4.7997 42 1 2.3198 -3.4042 -6.5404 43 1 4.9732 -3.0060 -7.2141 44 1 2.3233 -7.5185 -5.2605 45 1 0.6789 -6.9597 -3.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = -97.137801 kcal Electronic energy + Delta-G solvation = -29844.167255 eV Core-core repulsion = 25724.364575 eV Total energy + Delta-G solvation = -4119.802679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.09685 -37.60481 -37.38516 -36.48601 -35.14390 -34.34364 -34.05950 -33.06433 -31.36309 -30.28206 -29.48992 -27.89407 -26.88369 -25.84303 -23.55859 -21.85008 -21.54051 -21.15569 -20.98897 -18.88733 -17.65664 -17.62347 -17.18690 -16.68122 -16.33335 -15.98378 -15.53881 -15.26899 -14.90339 -14.42974 -14.39056 -14.13710 -13.85483 -13.71973 -13.40041 -13.25484 -13.21811 -12.74003 -12.43441 -12.39449 -12.29020 -12.21043 -11.86001 -11.81745 -11.56902 -11.48324 -11.38527 -11.29907 -11.23213 -11.19223 -11.03410 -10.92773 -10.42025 -10.22055 -9.79822 -9.67849 -9.53717 -9.09987 -8.93562 -8.70546 -7.98846 -7.72918 -7.17478 -4.82970 1.11610 1.25303 1.30111 2.22585 2.85936 2.88921 2.90821 2.91448 3.54840 3.64177 3.71389 4.19750 4.29131 4.49784 4.51089 4.66610 4.73225 4.86324 4.90907 5.05027 5.16866 5.21432 5.36056 5.38728 5.48250 5.48754 5.59049 5.72193 5.79091 5.93776 6.02751 6.04950 6.08267 6.12509 6.33753 6.37657 6.46558 6.65501 6.68535 6.85322 6.89035 7.02455 7.28898 7.32802 7.40441 7.47390 7.61047 7.74708 7.94414 8.29272 8.48809 8.62400 9.73929 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.003357 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.365540 B = 8338.945588 C =10479.122009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.103 4.103 7 C -0.118 4.118 8 C 0.144 3.856 9 H 0.116 0.884 10 O -0.552 6.552 11 C 0.094 3.906 12 N -1.122 6.122 13 S 2.693 3.307 14 O -0.985 6.985 15 O -0.985 6.985 16 C -0.788 4.788 17 C -0.018 4.018 18 C -0.182 4.182 19 C 0.140 3.860 20 C -0.435 4.435 21 H 0.088 0.912 22 C 0.073 3.927 23 N -0.766 5.766 24 Si 0.917 3.083 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.239 4.239 29 C 0.003 3.997 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.378 0.622 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.414 0.586 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 8.450 11.294 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.119 4.119 8 C 0.083 3.917 9 H 0.134 0.866 10 O -0.358 6.358 11 C -0.033 4.033 12 N -0.879 5.879 13 S 2.792 3.208 14 O -0.976 6.976 15 O -0.975 6.975 16 C -0.884 4.884 17 C -0.038 4.038 18 C -0.202 4.202 19 C 0.136 3.864 20 C -0.463 4.463 21 H 0.106 0.894 22 C -0.149 4.149 23 N -0.388 5.388 24 Si 0.740 3.260 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.182 1.182 28 C -0.260 4.260 29 C -0.017 4.017 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.227 0.773 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.247 0.753 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.224 8.758 11.532 14.482 hybrid contribution 1.814 -0.187 -1.123 2.142 sum 1.589 8.571 10.409 13.577 Atomic orbital electron populations 1.20973 0.91024 1.03827 1.02609 1.19735 0.96144 0.92436 0.98977 1.21026 0.94289 0.97389 1.01106 1.21155 0.94329 0.98089 0.99860 1.21099 0.99947 0.92390 1.00627 1.20893 0.93383 0.98485 0.99355 1.20302 0.94368 0.95064 1.02129 1.21004 0.93364 0.83577 0.93743 0.86641 1.86593 1.35515 1.56502 1.57222 1.21870 0.96254 0.87800 0.97352 1.55660 1.65420 1.35833 1.30970 1.01220 0.74062 0.72675 0.72822 1.93495 1.73007 1.46437 1.84628 1.93480 1.72368 1.49992 1.81658 1.29149 1.32399 1.02041 1.24783 1.20260 0.93973 0.95712 0.93844 1.21331 0.99672 0.97876 1.01371 1.17852 0.88315 0.91638 0.88589 1.19963 1.13616 0.96848 1.15830 0.89416 1.26127 0.96122 0.94084 0.98588 1.69814 1.27794 1.05757 1.35460 0.86146 0.78701 0.80191 0.80939 1.18767 1.19859 1.18174 1.21054 1.05329 0.98974 1.00626 1.20164 0.92707 0.93075 0.95743 0.90875 0.90641 0.91026 0.85974 0.86108 0.85961 0.85846 0.77337 0.89465 0.90725 0.75250 0.87983 0.86000 0.90001 0.88193 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.22 36.01 0.33 -0.88 16 2 C -0.07 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 6 C -0.10 -1.12 9.30 -39.59 -0.37 -1.49 16 7 C -0.12 -1.35 5.07 -104.63 -0.53 -1.88 16 8 C 0.14 1.65 2.60 -27.88 -0.07 1.58 16 9 H 0.12 1.25 6.99 -51.93 -0.36 0.89 16 10 O -0.55 -6.34 12.79 -35.23 -0.45 -6.79 16 11 C 0.09 1.28 5.59 -4.05 -0.02 1.26 16 12 N -1.12 -16.58 5.96 -10.62 -0.06 -16.64 16 13 S 2.69 51.09 5.73 -107.50 -0.62 50.47 16 14 O -0.98 -20.72 17.26 -57.17 -0.99 -21.71 16 15 O -0.98 -20.57 16.72 -57.17 -0.96 -21.52 16 16 C -0.79 -17.07 5.97 -39.29 -0.23 -17.30 16 17 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 18 C -0.18 -4.48 8.70 -38.88 -0.34 -4.82 16 19 C 0.14 3.49 5.57 -106.82 -0.60 2.90 16 20 C -0.44 -10.54 9.05 -37.74 -0.34 -10.88 16 21 H 0.09 2.02 7.91 -52.48 -0.42 1.60 16 22 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 23 N -0.77 -17.80 10.95 55.55 0.61 -17.19 16 24 Si 0.92 16.80 29.60 -169.99 -5.03 11.77 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 27 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 28 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 29 C 0.00 0.07 9.49 -39.66 -0.38 -0.30 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.77 5.49 -51.93 -0.29 0.49 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.13 6.41 -52.48 -0.34 0.80 16 37 H 0.38 3.48 7.32 45.56 0.33 3.82 16 38 H 0.09 1.21 6.64 -51.93 -0.34 0.87 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.41 5.38 8.51 -34.47 -0.29 5.09 16 41 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 42 H 0.12 3.04 6.16 -52.49 -0.32 2.71 16 43 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 44 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 45 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -30.62 386.52 -11.77 -42.39 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -4.91 Total: 16.59 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: -5.19 Total: -43.20 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.55 Total: -33.83 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -2.39 Total: -50.02 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.62 Total: 50.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.62 -11.77 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.746 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds