Wall clock time and date at job start Tue Mar 31 2020 05:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99887 * 2 1 4 4 C 1.38212 * 120.00169 * 179.74611 * 3 2 1 5 5 C 1.38258 * 119.99575 * 0.52798 * 4 3 2 6 6 C 1.38211 * 120.00216 * 359.75045 * 5 4 3 7 7 C 1.38210 * 120.00505 * 180.27788 * 2 1 3 8 8 C 1.50702 * 119.99428 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.47347 * 324.99499 * 8 7 2 10 10 O 1.42902 * 109.46620 * 205.00220 * 8 7 2 11 11 C 1.53000 * 109.47491 * 85.00108 * 8 7 2 12 12 N 1.46492 * 109.47175 * 184.99504 * 11 8 7 13 13 S 1.65599 * 119.99968 * 164.99824 * 12 11 8 14 14 O 1.42101 * 106.40415 * 178.54548 * 13 12 11 15 15 O 1.42107 * 106.40299 * 311.46448 * 13 12 11 16 16 C 1.76201 * 107.21703 * 65.00403 * 13 12 11 17 17 C 1.38640 * 119.74918 * 269.72805 * 16 13 12 18 18 C 1.37616 * 120.24828 * 179.72279 * 17 16 13 19 19 C 1.40708 * 119.74481 * 0.56640 * 18 17 16 20 20 C 1.41398 * 120.24538 * 179.68388 * 19 18 17 21 21 H 1.08006 * 119.99831 * 204.40861 * 20 19 18 22 22 C 1.39943 * 120.00114 * 24.41181 * 20 19 18 23 23 N 1.30827 * 119.99735 * 17.84334 * 22 20 19 24 24 Si 1.86799 * 120.00141 * 197.85041 * 22 20 19 25 25 H 1.48496 * 109.47218 * 89.99507 * 24 22 20 26 26 H 1.48500 * 109.46914 * 209.99682 * 24 22 20 27 27 H 1.48507 * 109.46952 * 329.99455 * 24 22 20 28 28 C 1.40721 * 119.51053 * 359.70881 * 19 18 17 29 29 C 1.37607 * 119.74713 * 359.97438 * 28 19 18 30 30 H 1.09000 * 109.46970 * 269.72779 * 1 2 3 31 31 H 1.08997 * 109.47230 * 149.72267 * 1 2 3 32 32 H 1.09004 * 109.47238 * 29.72408 * 1 2 3 33 33 H 1.08003 * 119.99728 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00225 * 180.29682 * 4 3 2 35 35 H 1.08000 * 119.99955 * 179.76697 * 5 4 3 36 36 H 1.08004 * 120.00393 * 179.97438 * 6 5 4 37 37 H 0.96700 * 113.99953 * 299.99554 * 10 8 7 38 38 H 1.08996 * 109.46907 * 305.00230 * 11 8 7 39 39 H 1.09006 * 109.46589 * 64.99597 * 11 8 7 40 40 H 0.97007 * 120.00119 * 345.00342 * 12 11 8 41 41 H 1.08004 * 119.86898 * 359.97438 * 17 16 13 42 42 H 1.08002 * 120.12814 * 180.28004 * 18 17 16 43 43 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 44 44 H 1.08005 * 120.12235 * 179.97438 * 28 19 18 45 45 H 1.08004 * 119.87838 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0053 5 6 4.2717 0.0002 -0.0004 6 6 3.5807 -1.1968 -0.0062 7 6 2.1982 -1.1969 -0.0058 8 6 1.4446 -2.5019 -0.0127 9 1 0.5337 -2.3987 0.5770 10 8 2.2638 -3.5278 0.5519 11 6 1.0813 -2.8736 -1.4517 12 7 0.2474 -4.0780 -1.4494 13 16 -0.5987 -4.5019 -2.8083 14 8 -1.2705 -5.7157 -2.5004 15 8 -1.2730 -3.3292 -3.2434 16 6 0.5817 -4.8897 -4.0578 17 6 1.0370 -3.8929 -4.9070 18 6 1.9630 -4.1831 -5.8828 19 6 2.4388 -5.4998 -6.0243 20 6 3.3853 -5.8111 -7.0276 21 1 3.4605 -6.8204 -7.4045 22 6 4.2246 -4.8114 -7.5321 23 7 4.3918 -3.6990 -6.8642 24 14 5.1061 -5.0653 -9.1593 25 1 4.2545 -4.5631 -10.2673 26 1 6.3917 -4.3220 -9.1471 27 1 5.3731 -6.5127 -9.3571 28 6 1.9652 -6.5045 -5.1603 29 6 1.0441 -6.1902 -4.1875 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3634 0.8925 -0.5096 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1328 0.0101 35 1 5.3517 0.0002 -0.0001 36 1 4.1207 -2.1321 -0.0111 37 1 3.0932 -3.6747 0.0770 38 1 0.5319 -2.0520 -1.9114 39 1 1.9925 -3.0636 -2.0190 40 1 0.1908 -4.6271 -0.6517 41 1 0.6665 -2.8841 -4.7997 42 1 2.3198 -3.4042 -6.5404 43 1 4.9732 -3.0060 -7.2141 44 1 2.3233 -7.5185 -5.2605 45 1 0.6789 -6.9597 -3.5236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095433119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:14 Heat of formation + Delta-G solvation = -117.223058 kcal Electronic energy + Delta-G solvation = -29845.038217 eV Core-core repulsion = 25724.364575 eV Total energy + Delta-G solvation = -4120.673641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.91464 -39.38811 -38.34883 -38.08051 -36.79592 -35.81476 -35.47202 -33.87213 -32.17673 -32.07072 -31.29593 -28.85622 -27.67592 -27.62405 -24.54329 -23.30791 -22.95503 -22.63405 -21.83952 -20.36135 -19.42574 -18.70045 -18.59881 -18.14655 -17.34683 -17.17639 -17.09289 -16.36390 -15.85954 -15.84621 -15.63623 -15.32644 -15.16576 -14.94009 -14.77786 -14.53085 -14.12109 -13.99824 -13.96510 -13.76790 -13.57967 -13.17914 -13.12465 -13.08441 -13.05417 -12.99318 -12.90743 -12.88562 -12.60934 -12.59901 -11.99059 -11.97137 -11.84829 -11.55896 -11.36420 -11.24032 -11.14760 -10.44949 -9.79847 -9.72855 -9.55712 -9.49880 -8.88002 -6.65502 -0.32566 0.38551 0.47650 0.48121 1.05416 1.35756 1.43273 1.50284 2.11159 2.21797 2.51283 2.79916 2.92739 3.40181 3.49620 3.54399 3.72371 3.81076 3.90448 4.05389 4.11119 4.23520 4.29806 4.32305 4.40901 4.47182 4.57520 4.76878 4.79618 4.81610 4.86829 4.92641 4.94998 4.98285 5.10596 5.14356 5.23642 5.31280 5.51845 5.55866 5.59136 5.61651 5.67521 5.75749 5.92628 6.09947 6.14248 6.16979 6.48524 6.65293 6.67950 6.80403 8.06922 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.003357 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.365540 B = 8338.945588 C =10479.122009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.134 4.134 8 C 0.156 3.844 9 H 0.124 0.876 10 O -0.559 6.559 11 C 0.091 3.909 12 N -1.105 6.105 13 S 2.726 3.274 14 O -1.001 7.001 15 O -1.001 7.001 16 C -0.797 4.797 17 C -0.020 4.020 18 C -0.206 4.206 19 C 0.113 3.887 20 C -0.466 4.466 21 H 0.090 0.910 22 C 0.037 3.963 23 N -0.793 5.793 24 Si 0.989 3.011 25 H -0.261 1.261 26 H -0.263 1.263 27 H -0.254 1.254 28 C -0.257 4.257 29 C -0.001 4.001 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.386 0.614 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.426 0.574 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.298 0.702 44 H 0.110 0.890 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 9.176 11.944 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.135 4.135 8 C 0.095 3.905 9 H 0.141 0.859 10 O -0.366 6.366 11 C -0.036 4.036 12 N -0.866 5.866 13 S 2.822 3.178 14 O -0.992 6.992 15 O -0.991 6.991 16 C -0.890 4.890 17 C -0.040 4.040 18 C -0.226 4.226 19 C 0.109 3.891 20 C -0.493 4.493 21 H 0.108 0.892 22 C -0.183 4.183 23 N -0.416 5.416 24 Si 0.809 3.191 25 H -0.186 1.186 26 H -0.187 1.187 27 H -0.178 1.178 28 C -0.278 4.278 29 C -0.021 4.021 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.237 0.763 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.262 0.738 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.244 9.464 12.175 15.423 hybrid contribution 1.647 -0.343 -1.196 2.064 sum 1.891 9.121 10.979 14.398 Atomic orbital electron populations 1.21008 0.90256 1.03768 1.03467 1.19994 0.96950 0.92658 0.98963 1.21332 0.94718 0.97936 1.00750 1.21499 0.94524 0.98938 0.98902 1.21398 1.00983 0.92396 1.00473 1.21149 0.93503 0.99423 0.99496 1.20355 0.94722 0.95086 1.03373 1.20868 0.93779 0.83759 0.92106 0.85858 1.86570 1.36086 1.56511 1.57457 1.22014 0.95520 0.86925 0.99123 1.55211 1.65169 1.36343 1.29846 1.00272 0.73153 0.71834 0.72571 1.93467 1.73447 1.47447 1.84823 1.93459 1.72716 1.50523 1.82372 1.29619 1.31994 1.01706 1.25664 1.20435 0.93451 0.96640 0.93445 1.21337 1.01064 0.97820 1.02373 1.18185 0.89183 0.92203 0.89519 1.20238 1.14512 0.97730 1.16819 0.89163 1.26956 0.96346 0.93387 1.01588 1.69838 1.28308 1.06512 1.36941 0.85078 0.77689 0.80245 0.76127 1.18573 1.18686 1.17780 1.21275 1.06156 0.99355 1.00995 1.20444 0.92227 0.93839 0.95567 0.89530 0.91630 0.90143 0.84097 0.83937 0.84366 0.84861 0.76316 0.89666 0.91506 0.73785 0.86811 0.87147 0.89035 0.87156 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.22 71.24 0.66 -1.60 16 2 C -0.09 -1.76 5.88 -19.86 -0.12 -1.88 16 3 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 4 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 5 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 6 C -0.12 -2.46 9.30 22.27 0.21 -2.25 16 7 C -0.13 -2.95 5.07 -19.87 -0.10 -3.05 16 8 C 0.16 3.41 2.60 29.85 0.08 3.48 16 9 H 0.12 2.49 6.99 -2.38 -0.02 2.47 16 10 O -0.56 -12.11 12.79 -148.98 -1.91 -14.01 16 11 C 0.09 2.40 5.59 86.38 0.48 2.88 16 12 N -1.10 -31.21 5.96 -187.50 -1.12 -32.33 16 13 S 2.73 100.66 5.73 -56.49 -0.32 100.34 16 14 O -1.00 -40.72 17.26 -128.00 -2.21 -42.93 16 15 O -1.00 -40.83 16.72 -128.00 -2.14 -42.97 16 16 C -0.80 -34.40 5.97 22.46 0.13 -34.27 16 17 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 18 C -0.21 -10.42 8.70 22.73 0.20 -10.22 16 19 C 0.11 5.78 5.57 -21.29 -0.12 5.66 16 20 C -0.47 -23.08 9.05 23.46 0.21 -22.87 16 21 H 0.09 4.25 7.91 -2.91 -0.02 4.22 16 22 C 0.04 1.68 5.14 85.26 0.44 2.12 16 23 N -0.79 -37.38 10.95 21.83 0.24 -37.14 16 24 Si 0.99 34.11 29.60 68.60 2.03 36.14 16 25 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 26 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 27 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 28 C -0.26 -12.24 9.80 22.73 0.22 -12.02 16 29 C 0.00 -0.04 9.49 22.22 0.21 0.17 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.27 5.49 -2.39 -0.01 1.26 16 32 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.13 2.35 6.41 -2.91 -0.02 2.33 16 37 H 0.39 6.74 7.32 -74.06 -0.54 6.20 16 38 H 0.09 2.32 6.64 -2.39 -0.02 2.30 16 39 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.43 10.30 8.51 -96.74 -0.82 9.47 16 41 H 0.11 4.84 7.59 -2.91 -0.02 4.82 16 42 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 43 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 44 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 45 H 0.12 4.88 7.60 -2.91 -0.02 4.86 16 Total: -1.00 -65.08 386.52 -2.36 -67.44 By element: Atomic # 1 Polarization: 46.77 SS G_CDS: -0.32 Total: 46.46 kcal Atomic # 6 Polarization: -84.37 SS G_CDS: 3.38 Total: -80.99 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.88 Total: -69.47 kcal Atomic # 8 Polarization: -93.66 SS G_CDS: -6.26 Total: -99.92 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Atomic # 16 Polarization: 100.66 SS G_CDS: -0.32 Total: 100.34 kcal Total: -65.08 -2.36 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.780 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds